RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 TMOD3Q9NYL9 352 aa14.22□□□□□ -0.13
SNX13-202ENST00000409604 PRR36Q9H6K5 1346 aa14.22□□□□□ -0.13
SNX13-202ENST00000409604 SLC4A3P48751 1232 aa14.21□□□□□ -0.13
SNX13-202ENST00000409604 FBXW7Q969H0 707 aa14.21□□□□□ -0.13
SNX13-202ENST00000409604 UBTFL1P0CB47 393 aaPredicted RBP14.21□□□□□ -0.13
SNX13-202ENST00000409604 DDX19BQ9UMR2 479 aa14.21□□□□□ -0.13
SNX13-202ENST00000409604 SPATA31E1Q6ZUB1 1445 aa14.21□□□□□ -0.14
SNX13-202ENST00000409604 SPINK5Q9NQ38 1064 aaPredicted RBP14.21□□□□□ -0.14
SNX13-202ENST00000409604 CHMP4AQ9BY43 222 aa14.2□□□□□ -0.14
SNX13-202ENST00000409604 ZBTB3Q9H5J0 574 aa14.2□□□□□ -0.14
SNX13-202ENST00000409604 ERVK-7P63135 1459 aa14.2□□□□□ -0.14
SNX13-202ENST00000409604 NFATC2IPQ8NCF5 419 aa14.2□□□□□ -0.14
SNX13-202ENST00000409604 TNNQ9UQP3 1299 aa14.2□□□□□ -0.14
SNX13-202ENST00000409604 GPTP24298 496 aa14.2□□□□□ -0.14
SNX13-202ENST00000409604 SURF6O75683 361 aaKnown RBP14.19□□□□□ -0.14
SNX13-202ENST00000409604 TULP1O00294 542 aaPredicted RBP14.19□□□□□ -0.14
SNX13-202ENST00000409604 KIF16BQ96L93 1317 aa14.19□□□□□ -0.14
SNX13-202ENST00000409604 PHF14O94880 888 aa14.19□□□□□ -0.14
SNX13-202ENST00000409604 HOXC9P31274 260 aa14.19□□□□□ -0.14
SNX13-202ENST00000409604 TAF7Q15545 349 aaPredicted RBP14.19□□□□□ -0.14
SNX13-202ENST00000409604 FANCIQ9NVI1 1328 aa14.19□□□□□ -0.14
SNX13-202ENST00000409604 RBM19Q9Y4C8 960 aaKnown RBP14.19□□□□□ -0.14
SNX13-202ENST00000409604 ABCC3O15438 1527 aa14.18□□□□□ -0.14
SNX13-202ENST00000409604 ATP5J2-PTCD1G3V325 749 aa14.18□□□□□ -0.14
SNX13-202ENST00000409604 SLKQ9H2G2 1235 aaPredicted RBP14.18□□□□□ -0.14
SNX13-202ENST00000409604 MBIPQ9NS73 344 aa14.18□□□□□ -0.14
SNX13-202ENST00000409604 MAGI2Q86UL8 1455 aa14.18□□□□□ -0.14
SNX13-202ENST00000409604 NBPF6Q5VWK0 638 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 TMEM57Q8N5G2 664 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 TSPYL6Q8N831 410 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 NBPF4Q96M43 638 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 TMX4Q9H1E5 349 aaPredicted RBP14.17□□□□□ -0.14
SNX13-202ENST00000409604 TOMM22Q9NS69 142 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 FAM98CQ17RN3 349 aaKnown RBP14.17□□□□□ -0.14
SNX13-202ENST00000409604 EFCAB6Q5THR3 1501 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 WDR63Q8IWG1 891 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 ABCC11Q96J66 1382 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 FAM161AQ3B820 660 aa14.17□□□□□ -0.14
SNX13-202ENST00000409604 ADGBQ8N7X0 1667 aa14.16□□□□□ -0.14
SNX13-202ENST00000409604 NCLP19338 710 aaKnown RBP14.16□□□□□ -0.14
SNX13-202ENST00000409604 SF3B2Q13435 895 aaKnown RBP14.16□□□□□ -0.14
SNX13-202ENST00000409604 ATF7IPQ6VMQ6 1270 aa14.16□□□□□ -0.14
SNX13-202ENST00000409604 KIAA1211Q6ZU35 1233 aa14.16□□□□□ -0.14
SNX13-202ENST00000409604 KDM5DQ9BY66 1539 aa14.16□□□□□ -0.14
SNX13-202ENST00000409604 C8orf58Q8NAV2 365 aa14.16□□□□□ -0.14
SNX13-202ENST00000409604 ZCRB1Q8TBF4 217 aaKnown RBP14.16□□□□□ -0.14
SNX13-202ENST00000409604 IL1RAPL2Q9NP60 686 aa14.16□□□□□ -0.14
SNX13-202ENST00000409604 GCC2Q8IWJ2 1684 aa14.15□□□□□ -0.14
SNX13-202ENST00000409604 LGR6Q9HBX8 967 aa14.15□□□□□ -0.14
SNX13-202ENST00000409604 TTC21AQ8NDW8 1320 aa14.15□□□□□ -0.14
SNX13-202ENST00000409604 G3BP1Q13283 466 aaKnown RBP eCLIP14.15□□□□□ -0.14
SNX13-202ENST00000409604 IFNL2Q8IZJ0 200 aa14.15□□□□□ -0.14
SNX13-202ENST00000409604 NPHP4O75161 1426 aaPredicted RBP14.15□□□□□ -0.14
SNX13-202ENST00000409604 SHROOM2Q13796 1616 aa14.15□□□□□ -0.14
SNX13-202ENST00000409604 ZNF219Q9P2Y4 722 aaPredicted RBP14.15□□□□□ -0.14
SNX13-202ENST00000409604 MAP4K4O95819 1239 aaPredicted RBP14.14□□□□□ -0.15
SNX13-202ENST00000409604 DDB1Q16531 1140 aa14.14□□□□□ -0.15
SNX13-202ENST00000409604 ABCA9Q8IUA7 1624 aa14.14□□□□□ -0.15
SNX13-202ENST00000409604 HSP90AB1P08238 724 aaKnown RBP14.14□□□□□ -0.15
SNX13-202ENST00000409604 RARSP54136 660 aaKnown RBP14.13□□□□□ -0.15
SNX13-202ENST00000409604 EXOC6BQ9Y2D4 811 aa14.13□□□□□ -0.15
SNX13-202ENST00000409604 IFIT2P09913 472 aaKnown RBP14.13□□□□□ -0.15
SNX13-202ENST00000409604 KIF6Q6ZMV9 814 aa14.13□□□□□ -0.15
SNX13-202ENST00000409604 BECN1Q14457 450 aa14.13□□□□□ -0.15
SNX13-202ENST00000409604 VPS37DQ86XT2 251 aa14.13□□□□□ -0.15
SNX13-202ENST00000409604 SRCIN1Q9C0H9 1055 aa14.13□□□□□ -0.15
SNX13-202ENST00000409604 CFAP74Q9C0B2 1584 aa14.12□□□□□ -0.15
SNX13-202ENST00000409604 PTPRTO14522 1441 aa14.12□□□□□ -0.15
SNX13-202ENST00000409604 AMOTQ4VCS5 1084 aa14.12□□□□□ -0.15
SNX13-202ENST00000409604 SETD1BQ9UPS6 1966 aaKnown RBP14.12□□□□□ -0.15
SNX13-202ENST00000409604 KCNQ4P56696 695 aa14.12□□□□□ -0.15
SNX13-202ENST00000409604 FOXD4L5Q5VV16 416 aaPredicted RBP14.12□□□□□ -0.15
SNX13-202ENST00000409604 FOXD4L4Q8WXT5 416 aaPredicted RBP14.12□□□□□ -0.15
SNX13-202ENST00000409604 MYD88Q99836 296 aa14.12□□□□□ -0.15
SNX13-202ENST00000409604 ASXL1Q8IXJ9 1541 aa14.11□□□□□ -0.15
SNX13-202ENST00000409604 LARP1Q6PKG0 1096 aaKnown RBP14.11□□□□□ -0.15
SNX13-202ENST00000409604 IP6K1Q92551 441 aa14.11□□□□□ -0.15
SNX13-202ENST00000409604 PARD3Q8TEW0 1356 aa14.11□□□□□ -0.15
SNX13-202ENST00000409604 CENPQQ7L2Z9 268 aaPredicted RBP14.11□□□□□ -0.15
SNX13-202ENST00000409604 SRGAP3O43295 1099 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 FOXD4L6Q3SYB3 417 aaPredicted RBP14.1□□□□□ -0.15
SNX13-202ENST00000409604 FOXD4L3Q6VB84 417 aaPredicted RBP14.1□□□□□ -0.15
SNX13-202ENST00000409604 PLEKHG3A1L390 1219 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 PI4KAP2A4QPH2 592 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 PI4KAP1Q8N8J0 262 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 A2ML1A8K2U0 1454 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 TSHZ2Q9NRE2 1034 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 FLT4P35916 1363 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 PLEKHG1Q9ULL1 1385 aa14.1□□□□□ -0.15
SNX13-202ENST00000409604 IL2RBP14784 551 aa14.09□□□□□ -0.15
SNX13-202ENST00000409604 STK11IPQ8N1F8 1099 aa14.09□□□□□ -0.15
SNX13-202ENST00000409604 CFAP44Q96MT7 982 aa14.09□□□□□ -0.15
SNX13-202ENST00000409604 TBC1D2BQ9UPU7 963 aa14.09□□□□□ -0.15
SNX13-202ENST00000409604 HDAC5Q9UQL6 1122 aa14.09□□□□□ -0.15
SNX13-202ENST00000409604 SMARCA5O60264 1052 aaPredicted RBP14.09□□□□□ -0.15
SNX13-202ENST00000409604 CHPF2Q9P2E5 772 aa14.09□□□□□ -0.15
SNX13-202ENST00000409604 APPP05067 770 aa14.08□□□□□ -0.16
SNX13-202ENST00000409604 TRIM27P14373 513 aa14.08□□□□□ -0.16
SNX13-202ENST00000409604 IL13P35225 146 aa14.08□□□□□ -0.16
SNX13-202ENST00000409604 CHMP4CQ96CF2 233 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms