RNA–Protein interactions for RNA: ENST00000409455.5

LIMS2-205, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-205ENST00000409455 MTHFSP49914 203 aa19.37■□□□□ 0.69
LIMS2-205ENST00000409455 FTSJ3Q8IY81 847 aaKnown RBP19.37■□□□□ 0.69
LIMS2-205ENST00000409455 SETD1BQ9UPS6 1966 aaKnown RBP19.37■□□□□ 0.69
LIMS2-205ENST00000409455 TCP11L2Q8N4U5 519 aa19.36■□□□□ 0.69
LIMS2-205ENST00000409455 ERBB4Q15303 1308 aa19.36■□□□□ 0.69
LIMS2-205ENST00000409455 IQSEC2Q5JU85 1478 aa19.36■□□□□ 0.69
LIMS2-205ENST00000409455 ZNF692Q9BU19 519 aaPredicted RBP19.36■□□□□ 0.69
LIMS2-205ENST00000409455 PPIP5K1Q6PFW1 1433 aa19.36■□□□□ 0.69
LIMS2-205ENST00000409455 PRR36Q9H6K5 1346 aa19.36■□□□□ 0.69
LIMS2-205ENST00000409455 PHF23Q9BUL5 403 aaPredicted RBP19.35■□□□□ 0.69
LIMS2-205ENST00000409455 NCOA3Q9Y6Q9 1424 aa19.35■□□□□ 0.69
LIMS2-205ENST00000409455 NUTM2FA1L443 756 aa19.35■□□□□ 0.69
LIMS2-205ENST00000409455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.35■□□□□ 0.69
LIMS2-205ENST00000409455 GBP4Q96PP9 640 aa19.34■□□□□ 0.69
LIMS2-205ENST00000409455 ZKSCAN2Q63HK3 967 aa19.34■□□□□ 0.69
LIMS2-205ENST00000409455 SHPRHQ149N8 1683 aa19.34■□□□□ 0.69
LIMS2-205ENST00000409455 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.34■□□□□ 0.69
LIMS2-205ENST00000409455 TPM2P07951 284 aa19.33■□□□□ 0.69
LIMS2-205ENST00000409455 KCNA6P17658 529 aa19.33■□□□□ 0.69
LIMS2-205ENST00000409455 ATP7BP35670 1465 aa19.33■□□□□ 0.69
LIMS2-205ENST00000409455 DZIP1LQ8IYY4 767 aaKnown RBP19.33■□□□□ 0.68
LIMS2-205ENST00000409455 PTMSP20962 102 aa19.32■□□□□ 0.68
LIMS2-205ENST00000409455 CPSF1Q10570 1443 aaKnown RBP19.32■□□□□ 0.68
LIMS2-205ENST00000409455 DDIT3P35638 169 aa19.32■□□□□ 0.68
LIMS2-205ENST00000409455 CCDC27Q2M243 656 aa19.32■□□□□ 0.68
LIMS2-205ENST00000409455 SKOR2Q2VWA4 1001 aaPredicted RBP19.32■□□□□ 0.68
LIMS2-205ENST00000409455 DIP2AQ14689 1571 aa19.32■□□□□ 0.68
LIMS2-205ENST00000409455 CIZ1Q9ULV3 898 aaPredicted RBP19.31■□□□□ 0.68
LIMS2-205ENST00000409455 HDAC1Q13547 482 aaPredicted RBP19.31■□□□□ 0.68
LIMS2-205ENST00000409455 TNPO1Q92973 898 aaKnown RBP19.31■□□□□ 0.68
LIMS2-205ENST00000409455 PTCH1Q13635 1447 aa19.31■□□□□ 0.68
LIMS2-205ENST00000409455 SNX21Q969T3 373 aa19.3■□□□□ 0.68
LIMS2-205ENST00000409455 ZNF142P52746 1687 aaPredicted RBP19.3■□□□□ 0.68
LIMS2-205ENST00000409455 HSP90AB1P08238 724 aaKnown RBP19.29■□□□□ 0.68
LIMS2-205ENST00000409455 RBM25P49756 843 aaKnown RBP19.29■□□□□ 0.68
LIMS2-205ENST00000409455 SMC5Q8IY18 1101 aa19.29■□□□□ 0.68
LIMS2-205ENST00000409455 PIK3R4Q99570 1358 aa19.29■□□□□ 0.68
LIMS2-205ENST00000409455 CFAP53Q96M91 514 aa19.28■□□□□ 0.68
LIMS2-205ENST00000409455 GAS2L3Q86XJ1 694 aa19.27■□□□□ 0.68
LIMS2-205ENST00000409455 ADGRB2O60241 1585 aa19.27■□□□□ 0.68
LIMS2-205ENST00000409455 CT47B1P0C2W7 299 aaPredicted RBP19.27■□□□□ 0.68
LIMS2-205ENST00000409455 DDX19BQ9UMR2 479 aa19.27■□□□□ 0.68
LIMS2-205ENST00000409455 RAB3GAP1Q15042 981 aa19.26■□□□□ 0.67
LIMS2-205ENST00000409455 EDC4Q6P2E9 1401 aaKnown RBP19.26■□□□□ 0.67
LIMS2-205ENST00000409455 FBLN1P23142 703 aa19.26■□□□□ 0.67
LIMS2-205ENST00000409455 CCDC173Q0VFZ6 552 aa19.26■□□□□ 0.67
LIMS2-205ENST00000409455 NME9Q86XW9 330 aa19.26■□□□□ 0.67
LIMS2-205ENST00000409455 ITPRIPQ8IWB1 547 aa19.25■□□□□ 0.67
LIMS2-205ENST00000409455 PLEKHG3A1L390 1219 aa19.25■□□□□ 0.67
LIMS2-205ENST00000409455 ANP32BQ92688 251 aaKnown RBP19.25■□□□□ 0.67
LIMS2-205ENST00000409455 PDCL3Q9H2J4 239 aa19.25■□□□□ 0.67
LIMS2-205ENST00000409455 SMC4Q9NTJ3 1288 aa19.25■□□□□ 0.67
LIMS2-205ENST00000409455 ZRANB1Q9UGI0 708 aa19.25■□□□□ 0.67
LIMS2-205ENST00000409455 ACEP12821 1306 aa19.25■□□□□ 0.67
LIMS2-205ENST00000409455 NCBP3Q53F19 620 aaKnown RBP19.24■□□□□ 0.67
LIMS2-205ENST00000409455 XRN1Q8IZH2 1706 aaKnown RBP19.24■□□□□ 0.67
LIMS2-205ENST00000409455 CDC42BPGQ6DT37 1551 aa19.24■□□□□ 0.67
LIMS2-205ENST00000409455 RBM33Q96EV2 1170 aaKnown RBP19.24■□□□□ 0.67
LIMS2-205ENST00000409455 TRIM27P14373 513 aa19.22■□□□□ 0.67
LIMS2-205ENST00000409455 NPHP4O75161 1426 aaPredicted RBP19.22■□□□□ 0.67
LIMS2-205ENST00000409455 KIAA1211Q6ZU35 1233 aa19.22■□□□□ 0.67
LIMS2-205ENST00000409455 GOLGA6L22H0YM25 854 aa19.21■□□□□ 0.67
LIMS2-205ENST00000409455 NASPP49321 788 aaPredicted RBP19.21■□□□□ 0.67
LIMS2-205ENST00000409455 ZSCAN30Q86W11 494 aa19.2■□□□□ 0.66
LIMS2-205ENST00000409455 ATF7IPQ6VMQ6 1270 aa19.2■□□□□ 0.66
LIMS2-205ENST00000409455 PPP1R9BQ96SB3 815 aa19.2■□□□□ 0.66
LIMS2-205ENST00000409455 ANKRD26Q9UPS8 1709 aa19.19■□□□□ 0.66
LIMS2-205ENST00000409455 U2AF1L5P0DN76 240 aaPredicted RBP19.19■□□□□ 0.66
LIMS2-205ENST00000409455 U2AF1Q01081 240 aaKnown RBP eCLIP19.19■□□□□ 0.66
LIMS2-205ENST00000409455 POLKQ9UBT6 870 aa19.19■□□□□ 0.66
LIMS2-205ENST00000409455 COG3Q96JB2 828 aa19.19■□□□□ 0.66
LIMS2-205ENST00000409455 KIF20BQ96Q89 1820 aa19.19■□□□□ 0.66
LIMS2-205ENST00000409455 MSNP26038 577 aaKnown RBP19.18■□□□□ 0.66
LIMS2-205ENST00000409455 TSR2Q969E8 191 aaKnown RBP19.18■□□□□ 0.66
LIMS2-205ENST00000409455 TTC21BQ7Z4L5 1316 aa19.18■□□□□ 0.66
LIMS2-205ENST00000409455 NUCB1Q02818 461 aa19.18■□□□□ 0.66
LIMS2-205ENST00000409455 IBTKQ9P2D0 1353 aaPredicted RBP19.17■□□□□ 0.66
LIMS2-205ENST00000409455 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.17■□□□□ 0.66
LIMS2-205ENST00000409455 CHD2O14647 1828 aaKnown RBP19.17■□□□□ 0.66
LIMS2-205ENST00000409455 K7ELQ4 463 aaPredicted RBP19.16■□□□□ 0.66
LIMS2-205ENST00000409455 U2SURPO15042 1029 aaKnown RBP19.16■□□□□ 0.66
LIMS2-205ENST00000409455 EXOSC9Q06265 439 aaKnown RBP19.16■□□□□ 0.66
LIMS2-205ENST00000409455 MON2Q7Z3U7 1717 aa19.16■□□□□ 0.66
LIMS2-205ENST00000409455 PNPLA6Q8IY17 1366 aa19.16■□□□□ 0.66
LIMS2-205ENST00000409455 NGDNQ8NEJ9 315 aaKnown RBP19.16■□□□□ 0.66
LIMS2-205ENST00000409455 SSH1Q8WYL5 1049 aa19.16■□□□□ 0.66
LIMS2-205ENST00000409455 LNPKQ9C0E8 428 aa19.16■□□□□ 0.66
LIMS2-205ENST00000409455 USP6P35125 1406 aa19.16■□□□□ 0.66
LIMS2-205ENST00000409455 TOPAZ1Q8N9V7 1692 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 OFD1O75665 1012 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 BMP2KLQ5H9B9 411 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 ZBTB40Q9NUA8 1239 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 AKAP12Q02952 1782 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 FOXD4L1Q9NU39 408 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 EMILIN1Q9Y6C2 1016 aa19.15■□□□□ 0.66
LIMS2-205ENST00000409455 DIAPH1O60610 1272 aaKnown RBP19.14■□□□□ 0.65
LIMS2-205ENST00000409455 KLHL40Q2TBA0 621 aa19.14■□□□□ 0.65
LIMS2-205ENST00000409455 CHD1LQ86WJ1 897 aa19.14■□□□□ 0.65
LIMS2-205ENST00000409455 NOB1Q9ULX3 412 aaKnown RBP19.14■□□□□ 0.65
LIMS2-205ENST00000409455 COL3A1P02461 1466 aaPredicted RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms