RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 RPGRIP1LQ68CZ1 1315 aa13.21□□□□□ -0.3
HPS4-202ENST00000398145 PLB1Q6P1J6 1458 aa13.21□□□□□ -0.3
HPS4-202ENST00000398145 HIP1O00291 1037 aa13.2□□□□□ -0.3
HPS4-202ENST00000398145 SNX21Q969T3 373 aa13.2□□□□□ -0.3
HPS4-202ENST00000398145 KDM2BQ8NHM5 1336 aa13.2□□□□□ -0.3
HPS4-202ENST00000398145 NPHP1O15259 732 aa13.2□□□□□ -0.3
HPS4-202ENST00000398145 TESK2Q96S53 571 aa13.2□□□□□ -0.3
HPS4-202ENST00000398145 NOC3LQ8WTT2 800 aaKnown RBP13.2□□□□□ -0.3
HPS4-202ENST00000398145 SNAPC4Q5SXM2 1469 aa13.19□□□□□ -0.3
HPS4-202ENST00000398145 TRDNQ13061 729 aa13.19□□□□□ -0.3
HPS4-202ENST00000398145 EXOC6BQ9Y2D4 811 aa13.19□□□□□ -0.3
HPS4-202ENST00000398145 NUCB1Q02818 461 aa13.19□□□□□ -0.3
HPS4-202ENST00000398145 NUP62CLQ9H1M0 184 aa13.19□□□□□ -0.3
HPS4-202ENST00000398145 TCOF1Q13428 1488 aaKnown RBP13.18□□□□□ -0.3
HPS4-202ENST00000398145 ANKRD1Q15327 319 aa13.18□□□□□ -0.3
HPS4-202ENST00000398145 DYNC1I1O14576 645 aa13.18□□□□□ -0.3
HPS4-202ENST00000398145 PDIA4P13667 645 aaKnown RBP13.18□□□□□ -0.3
HPS4-202ENST00000398145 AKAP17AQ02040 695 aaKnown RBP13.18□□□□□ -0.3
HPS4-202ENST00000398145 CCDC183Q5T5S1 534 aa13.18□□□□□ -0.3
HPS4-202ENST00000398145 ZSCAN31Q96LW9 406 aaPredicted RBP13.18□□□□□ -0.3
HPS4-202ENST00000398145 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
HPS4-202ENST00000398145 IPO7O95373 1038 aaKnown RBP13.18□□□□□ -0.3
HPS4-202ENST00000398145 RRAGDQ9NQL2 400 aaPredicted RBP13.18□□□□□ -0.3
HPS4-202ENST00000398145 HDGFL1Q5TGJ6 251 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 CCDC70Q6NSX1 233 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 PRAG1Q86YV5 1406 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 USP25Q9UHP3 1055 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 SMARCA5O60264 1052 aaPredicted RBP13.17□□□□□ -0.3
HPS4-202ENST00000398145 SMC2O95347 1197 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 ZSCAN23Q3MJ62 389 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 CFAP43Q8NDM7 1665 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 GPATCH8Q9UKJ3 1502 aaKnown RBP13.17□□□□□ -0.3
HPS4-202ENST00000398145 HSP90B2PQ58FF3 399 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 ERC1Q8IUD2 1116 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 IL1RAPL2Q9NP60 686 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 MRC2Q9UBG0 1479 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 RLBP1P12271 317 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 ANKRD20A12PQ8NF67 263 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 SLC52A1Q9NWF4 448 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 ADGRF5Q8IZF2 1346 aa13.17□□□□□ -0.3
HPS4-202ENST00000398145 MAP3K11Q16584 847 aa13.16□□□□□ -0.3
HPS4-202ENST00000398145 SMC5Q8IY18 1101 aa13.16□□□□□ -0.3
HPS4-202ENST00000398145 CEBPZQ03701 1054 aaKnown RBP13.16□□□□□ -0.3
HPS4-202ENST00000398145 CCP110O43303 1012 aa13.16□□□□□ -0.3
HPS4-202ENST00000398145 MX1P20591 662 aa13.16□□□□□ -0.3
HPS4-202ENST00000398145 RALYLQ86SE5 291 aaKnown RBP13.16□□□□□ -0.3
HPS4-202ENST00000398145 SPATA32Q96LK8 384 aa13.16□□□□□ -0.3
HPS4-202ENST00000398145 IL16Q14005 1332 aa13.16□□□□□ -0.3
HPS4-202ENST00000398145 JAKMIP1Q96N16 626 aaKnown RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 PDRG1Q9NUG6 133 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 PPP6R1Q9UPN7 881 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 ASXL1Q8IXJ9 1541 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 MAP4K4O95819 1239 aaPredicted RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 BLOC1S2Q6QNY1 142 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 OLFM4Q6UX06 510 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 TTC5Q8N0Z6 440 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 ZNF396Q96N95 335 aaPredicted RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 ACBD3Q9H3P7 528 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 PRDM10Q9NQV6 1147 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 APPP05067 770 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 CBX1P83916 185 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 DHX8Q14562 1220 aaKnown RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 RIC3Q7Z5B4 369 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 SRGAP3O43295 1099 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 RAB3GAP1Q15042 981 aa13.15□□□□□ -0.3
HPS4-202ENST00000398145 CWC27Q6UX04 472 aaKnown RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 ZNF692Q9BU19 519 aaPredicted RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 RBM27Q9P2N5 1060 aaKnown RBP13.15□□□□□ -0.3
HPS4-202ENST00000398145 NLRP6P59044 892 aa13.14□□□□□ -0.31
HPS4-202ENST00000398145 SETQ01105 290 aaPredicted RBP13.14□□□□□ -0.31
HPS4-202ENST00000398145 AIMP1Q12904 312 aaKnown RBP13.14□□□□□ -0.31
HPS4-202ENST00000398145 FILIP1Q7Z7B0 1213 aa13.14□□□□□ -0.31
HPS4-202ENST00000398145 NEUROD6Q96NK8 337 aa13.14□□□□□ -0.31
HPS4-202ENST00000398145 CWC15Q9P013 229 aaKnown RBP13.14□□□□□ -0.31
HPS4-202ENST00000398145 LRSAM1Q6UWE0 723 aa13.14□□□□□ -0.31
HPS4-202ENST00000398145 SPINK5Q9NQ38 1064 aaPredicted RBP13.14□□□□□ -0.31
HPS4-202ENST00000398145 TNNQ9UQP3 1299 aa13.14□□□□□ -0.31
HPS4-202ENST00000398145 NOM1Q5C9Z4 860 aaKnown RBP13.13□□□□□ -0.31
HPS4-202ENST00000398145 PDILTQ8N807 584 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 STK3Q13188 491 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 RRS1Q15050 365 aaKnown RBP13.13□□□□□ -0.31
HPS4-202ENST00000398145 SAFBQ15424 915 aaKnown RBP eCLIP13.13□□□□□ -0.31
HPS4-202ENST00000398145 GDPD2Q9HCC8 539 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 STK38Q15208 465 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 HS1BP3Q53T59 392 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 PRIMPOLQ96LW4 560 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 CFAP45Q9UL16 551 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 ZKSCAN5Q9Y2L8 839 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 PIK3C2GO75747 1445 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 ME1P48163 572 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 TTC22Q5TAA0 569 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 NSD2O96028 1365 aa13.13□□□□□ -0.31
HPS4-202ENST00000398145 CASTP20810 708 aaKnown RBP13.12□□□□□ -0.31
HPS4-202ENST00000398145 FERMT3Q86UX7 667 aa13.12□□□□□ -0.31
HPS4-202ENST00000398145 ARHGAP45Q92619 1136 aa13.12□□□□□ -0.31
HPS4-202ENST00000398145 TEX14Q8IWB6 1497 aa13.12□□□□□ -0.31
HPS4-202ENST00000398145 NUP160Q12769 1436 aa13.12□□□□□ -0.31
HPS4-202ENST00000398145 OFD1O75665 1012 aa13.12□□□□□ -0.31
HPS4-202ENST00000398145 RBM42Q9BTD8 480 aaKnown RBP13.12□□□□□ -0.31
HPS4-202ENST00000398145 KIF14Q15058 1648 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms