RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 IQGAP3Q86VI3 1631 aa8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 NBPF6Q5VWK0 638 aa8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 NBPF5PQ86XG9 351 aaPredicted RBP8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 NBPF4Q96M43 638 aa8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 RGS17Q9UGC6 210 aaPredicted RBP8.27□□□□□ -1.09
TM9SF4-202ENST00000398022 TSPY4P0CV99 314 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 TSPY10P0CW01 314 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 SETDB1Q15047 1291 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 SPATA32Q96LK8 384 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 RNF123Q5XPI4 1314 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 TESPA1A2RU30 521 aaPredicted RBP8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 PNISRQ8TF01 805 aaKnown RBP8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 FBXW7Q969H0 707 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 IPO9Q96P70 1041 aaKnown RBP8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 SUGT1Q9Y2Z0 365 aa8.26□□□□□ -1.09
TM9SF4-202ENST00000398022 NPHP4O75161 1426 aaPredicted RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 ANKRD50Q9ULJ7 1429 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 BRD4O60885 1362 aaPredicted RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 MYBBP1AQ9BQG0 1328 aaKnown RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 ZNF500O60304 480 aaPredicted RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 ADGRL2O95490 1459 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 ZFYVE9O95405 1425 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 DISP3Q9P2K9 1392 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 PPP4R3BQ5MIZ7 849 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 KRBA2Q6ZNG9 492 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 GEMIN8Q9NWZ8 242 aaKnown RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 NOS1P29475 1434 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 NUP155O75694 1391 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 TNNT2P45379 298 aaPredicted RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 NBPF10Q6P3W6 841 aaKnown RBP8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 ERBINQ96RT1 1412 aa8.25□□□□□ -1.09
TM9SF4-202ENST00000398022 MAP2K1Q02750 393 aaPredicted RBP8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 PDE3BQ13370 1112 aa8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 TNRQ92752 1358 aa8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 PHLPP1O60346 1717 aa8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 SPAG9O60271 1321 aaKnown RBP8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 RALGAPBQ86X10 1494 aa8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 AHDC1Q5TGY3 1603 aaPredicted RBP8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 RPS6KL1Q9Y6S9 549 aa8.24□□□□□ -1.09
TM9SF4-202ENST00000398022 NGEFQ8N5V2 710 aa8.23□□□□□ -1.09
TM9SF4-202ENST00000398022 ZNF513Q8N8E2 541 aaPredicted RBP8.23□□□□□ -1.09
TM9SF4-202ENST00000398022 GOLGA6CA6NDK9 693 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 GOLGA6BA6NDN3 693 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 GOLGA6DP0CG33 693 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 SSFA2P28290 1259 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 SLC20A2Q08357 652 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 RGL3Q3MIN7 710 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 FBXO31Q5XUX0 539 aaPredicted RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 NLRP13Q86W25 1043 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 GOLGA6AQ9NYA3 693 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 RAI14Q9P0K7 980 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 NALCNQ8IZF0 1738 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 MSL3Q8N5Y2 521 aaKnown RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 NUB1Q9Y5A7 615 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 SCAF11Q99590 1463 aaKnown RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 RIOK3O14730 519 aaKnown RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 DHX16O60231 1041 aaKnown RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 ARHGEF1Q92888 912 aaKnown RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 EVI5LQ96CN4 794 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 GPBP1L1Q9HC44 474 aaPredicted RBP8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 RCAN3Q9UKA8 241 aa8.22□□□□□ -1.09
TM9SF4-202ENST00000398022 RRP1P56182 461 aaKnown RBP8.21□□□□□ -1.09
TM9SF4-202ENST00000398022 BSDC1Q9NW68 430 aaPredicted RBP8.21□□□□□ -1.09
TM9SF4-202ENST00000398022 ST20-MTHFSA0A0A6YYL1 179 aa8.21□□□□□ -1.09
TM9SF4-202ENST00000398022 LMOD2Q6P5Q4 547 aa8.21□□□□□ -1.09
TM9SF4-202ENST00000398022 DCAF11Q8TEB1 546 aa8.21□□□□□ -1.09
TM9SF4-202ENST00000398022 MKL1Q969V6 931 aa8.21□□□□□ -1.09
TM9SF4-202ENST00000398022 ANKRD62A6NC57 917 aa8.21□□□□□ -1.1
TM9SF4-202ENST00000398022 MTA1Q13330 715 aa8.21□□□□□ -1.1
TM9SF4-202ENST00000398022 LONRF3Q496Y0 759 aa8.21□□□□□ -1.1
TM9SF4-202ENST00000398022 MARF1Q9Y4F3 1742 aaKnown RBP8.21□□□□□ -1.1
TM9SF4-202ENST00000398022 IFT172Q9UG01 1749 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 LRP6O75581 1613 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 SCP2P22307 547 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 DDRGK1Q96HY6 314 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 ESF1Q9H501 851 aaKnown RBP8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 FEZ2Q9UHY8 353 aaPredicted RBP8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 HMGB1P1B2RPK0 211 aaPredicted RBP8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 HSPA1LP34931 641 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 ZKSCAN8Q15776 578 aaPredicted RBP8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 CCDC181Q5TID7 509 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 ZNF280DQ6N043 979 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 ANKRD23Q86SG2 305 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 BANK1Q8NDB2 785 aa8.2□□□□□ -1.1
TM9SF4-202ENST00000398022 LRPPRCP42704 1394 aaKnown RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 NKTRP30414 1462 aaKnown RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 SATB1Q01826 763 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 CXorf38Q8TB03 319 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 PAK3O75914 559 aaPredicted RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 MS4A1P11836 297 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 WDR78Q5VTH9 848 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 DDX46Q7L014 1031 aaKnown RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 COL22A1Q8NFW1 1626 aaPredicted RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 SPHKAPQ2M3C7 1700 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 KIF20AO95235 890 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 MAP7D2Q96T17 732 aa8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 ZBTB12Q9Y330 459 aaPredicted RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 ZC3H4Q9UPT8 1303 aaKnown RBP8.19□□□□□ -1.1
TM9SF4-202ENST00000398022 MICAL1Q8TDZ2 1067 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms