RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 NISCHQ9Y2I1 1504 aa13.54□□□□□ -0.24
TM9SF4-202ENST00000398022 SLC24A1O60721 1099 aa12.44□□□□□ -0.42
TM9SF4-202ENST00000398022 CCDC180Q9P1Z9 1646 aa12.43□□□□□ -0.42
TM9SF4-202ENST00000398022 MYT1Q01538 1121 aa12.11□□□□□ -0.47
TM9SF4-202ENST00000398022 ABCC9O60706 1549 aa12.1□□□□□ -0.47
TM9SF4-202ENST00000398022 PELP1Q8IZL8 1130 aaKnown RBP11.98□□□□□ -0.49
TM9SF4-202ENST00000398022 TTBK1Q5TCY1 1321 aaPredicted RBP11.91□□□□□ -0.5
TM9SF4-202ENST00000398022 UNC13AQ9UPW8 1703 aa11.84□□□□□ -0.51
TM9SF4-202ENST00000398022 RB1CC1Q8TDY2 1594 aa11.63□□□□□ -0.55
TM9SF4-202ENST00000398022 DNAJC5BQ9UF47 199 aa11.62□□□□□ -0.55
TM9SF4-202ENST00000398022 BICRAQ9NZM4 1560 aa11.6□□□□□ -0.55
TM9SF4-202ENST00000398022 DAXXQ9UER7 740 aaPredicted RBP11.59□□□□□ -0.55
TM9SF4-202ENST00000398022 NACADO15069 1562 aa11.58□□□□□ -0.56
TM9SF4-202ENST00000398022 MYO15BQ96JP2 1530 aa11.55□□□□□ -0.56
TM9SF4-202ENST00000398022 PRKCSHP14314 528 aaPredicted RBP11.52□□□□□ -0.57
TM9SF4-202ENST00000398022 ERICH6Q7L0X2 663 aa11.51□□□□□ -0.57
TM9SF4-202ENST00000398022 APLP2Q06481 763 aa11.47□□□□□ -0.57
TM9SF4-202ENST00000398022 DCAF1Q9Y4B6 1507 aa11.33□□□□□ -0.6
TM9SF4-202ENST00000398022 SHROOM4Q9ULL8 1493 aa11.29□□□□□ -0.6
TM9SF4-202ENST00000398022 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.61
TM9SF4-202ENST00000398022 CC2D2AQ9P2K1 1620 aa11.19□□□□□ -0.62
TM9SF4-202ENST00000398022 EIF4G1Q04637 1599 aaKnown RBP11.13□□□□□ -0.63
TM9SF4-202ENST00000398022 NCBP3Q53F19 620 aaKnown RBP11.07□□□□□ -0.64
TM9SF4-202ENST00000398022 PABPN1Q86U42 306 aaKnown RBP eCLIP11.06□□□□□ -0.64
TM9SF4-202ENST00000398022 SCRIBQ14160 1630 aa11.04□□□□□ -0.64
TM9SF4-202ENST00000398022 CECR2Q9BXF3 1484 aa10.96□□□□□ -0.66
TM9SF4-202ENST00000398022 EHMT2Q96KQ7 1210 aa10.95□□□□□ -0.66
TM9SF4-202ENST00000398022 PLPPR3Q6T4P5 718 aa10.85□□□□□ -0.67
TM9SF4-202ENST00000398022 RTN4Q9NQC3 1192 aaKnown RBP10.85□□□□□ -0.67
TM9SF4-202ENST00000398022 EIF5BO60841 1220 aaKnown RBP10.83□□□□□ -0.68
TM9SF4-202ENST00000398022 ARXQ96QS3 562 aa10.77□□□□□ -0.69
TM9SF4-202ENST00000398022 PEG3Q9GZU2 1588 aa10.73□□□□□ -0.69
TM9SF4-202ENST00000398022 THOC2Q8NI27 1593 aaKnown RBP10.7□□□□□ -0.7
TM9SF4-202ENST00000398022 RANGAP1P46060 587 aaPredicted RBP10.68□□□□□ -0.7
TM9SF4-202ENST00000398022 HMGXB3Q12766 1538 aa10.68□□□□□ -0.7
TM9SF4-202ENST00000398022 BCL11AQ9H165 835 aa10.67□□□□□ -0.7
TM9SF4-202ENST00000398022 NCAPD3P42695 1498 aa10.67□□□□□ -0.7
TM9SF4-202ENST00000398022 SMARCA4P51532 1647 aa10.66□□□□□ -0.7
TM9SF4-202ENST00000398022 CUX2O14529 1486 aa10.65□□□□□ -0.7
TM9SF4-202ENST00000398022 DCAF8L2P0C7V8 631 aa10.63□□□□□ -0.71
TM9SF4-202ENST00000398022 DNAJC5Q9H3Z4 198 aa10.62□□□□□ -0.71
TM9SF4-202ENST00000398022 ATAD2BQ9ULI0 1458 aa10.59□□□□□ -0.71
TM9SF4-202ENST00000398022 KIF21AQ7Z4S6 1674 aa10.59□□□□□ -0.71
TM9SF4-202ENST00000398022 AMER1Q5JTC6 1135 aaPredicted RBP10.58□□□□□ -0.72
TM9SF4-202ENST00000398022 TIMELESSQ9UNS1 1208 aa10.54□□□□□ -0.72
TM9SF4-202ENST00000398022 SMARCA2P51531 1590 aa10.53□□□□□ -0.72
TM9SF4-202ENST00000398022 NESP48681 1621 aa10.51□□□□□ -0.73
TM9SF4-202ENST00000398022 LAMC3Q9Y6N6 1575 aa10.49□□□□□ -0.73
TM9SF4-202ENST00000398022 SUPT5HO00267 1087 aaKnown RBP10.46□□□□□ -0.73
TM9SF4-202ENST00000398022 BAZ1AQ9NRL2 1556 aaPredicted RBP10.45□□□□□ -0.74
TM9SF4-202ENST00000398022 MROH2BQ7Z745 1585 aa10.43□□□□□ -0.74
TM9SF4-202ENST00000398022 KLHL34Q8N239 644 aa10.43□□□□□ -0.74
TM9SF4-202ENST00000398022 FAM9AQ8IZU1 332 aaPredicted RBP10.42□□□□□ -0.74
TM9SF4-202ENST00000398022 PRDM2Q13029 1718 aa10.42□□□□□ -0.74
TM9SF4-202ENST00000398022 HOMEZQ8IX15 550 aa10.41□□□□□ -0.74
TM9SF4-202ENST00000398022 WDR62O43379 1518 aa10.41□□□□□ -0.74
TM9SF4-202ENST00000398022 PLEKHG5O94827 1062 aa10.4□□□□□ -0.74
TM9SF4-202ENST00000398022 TULP1O00294 542 aaPredicted RBP10.38□□□□□ -0.75
TM9SF4-202ENST00000398022 WIZO95785 1651 aa10.36□□□□□ -0.75
TM9SF4-202ENST00000398022 BAZ1BQ9UIG0 1483 aaKnown RBP10.33□□□□□ -0.76
TM9SF4-202ENST00000398022 ERCC6Q03468 1493 aa10.29□□□□□ -0.76
TM9SF4-202ENST00000398022 PODXL2Q9NZ53 605 aa10.27□□□□□ -0.77
TM9SF4-202ENST00000398022 KCNA4P22459 653 aa10.24□□□□□ -0.77
TM9SF4-202ENST00000398022 MRC2Q9UBG0 1479 aa10.22□□□□□ -0.77
TM9SF4-202ENST00000398022 TAOK2Q9UL54 1235 aa10.22□□□□□ -0.77
TM9SF4-202ENST00000398022 CHIC1Q5VXU3 224 aa10.2□□□□□ -0.78
TM9SF4-202ENST00000398022 CFTRP13569 1480 aa10.19□□□□□ -0.78
TM9SF4-202ENST00000398022 URB2Q14146 1524 aaKnown RBP10.18□□□□□ -0.78
TM9SF4-202ENST00000398022 TOP2AP11388 1531 aaKnown RBP10.17□□□□□ -0.78
TM9SF4-202ENST00000398022 CADPSQ9ULU8 1353 aa10.17□□□□□ -0.78
TM9SF4-202ENST00000398022 HRCP23327 699 aa10.16□□□□□ -0.78
TM9SF4-202ENST00000398022 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
TM9SF4-202ENST00000398022 RIMBP3CA6NJZ7 1639 aa10.12□□□□□ -0.79
TM9SF4-202ENST00000398022 RIMBP3BA6NNM3 1639 aa10.12□□□□□ -0.79
TM9SF4-202ENST00000398022 RIMBP3Q9UFD9 1639 aa10.12□□□□□ -0.79
TM9SF4-202ENST00000398022 TARBP1Q13395 1621 aaKnown RBP10.12□□□□□ -0.79
TM9SF4-202ENST00000398022 UBE2Q2Q8WVN8 375 aa10.12□□□□□ -0.79
TM9SF4-202ENST00000398022 FANCD2Q9BXW9 1451 aa10.09□□□□□ -0.79
TM9SF4-202ENST00000398022 WDR97A6NE52 1622 aa10.08□□□□□ -0.8
TM9SF4-202ENST00000398022 NPM2Q86SE8 214 aaKnown RBP10.08□□□□□ -0.8
TM9SF4-202ENST00000398022 CEP164Q9UPV0 1460 aa10.08□□□□□ -0.8
TM9SF4-202ENST00000398022 RSF1Q96T23 1441 aaPredicted RBP10.08□□□□□ -0.8
TM9SF4-202ENST00000398022 CHD1O14646 1710 aa10.07□□□□□ -0.8
TM9SF4-202ENST00000398022 PCGF6Q9BYE7 350 aa10.07□□□□□ -0.8
TM9SF4-202ENST00000398022 EIF4G3O43432 1585 aaKnown RBP10.06□□□□□ -0.8
TM9SF4-202ENST00000398022 TPRNQ4KMQ1 711 aa10.06□□□□□ -0.8
TM9SF4-202ENST00000398022 BCANQ96GW7 911 aa10.05□□□□□ -0.8
TM9SF4-202ENST00000398022 CENPBP07199 599 aaPredicted RBP10.03□□□□□ -0.8
TM9SF4-202ENST00000398022 CSRNP3Q8WYN3 585 aa10.03□□□□□ -0.8
TM9SF4-202ENST00000398022 PDIA4P13667 645 aaKnown RBP10.03□□□□□ -0.8
TM9SF4-202ENST00000398022 ZNF608Q9ULD9 1512 aaPredicted RBP10.01□□□□□ -0.81
TM9SF4-202ENST00000398022 GTF3C3Q9Y5Q9 886 aa10□□□□□ -0.81
TM9SF4-202ENST00000398022 CLASP1Q7Z460 1538 aa9.98□□□□□ -0.81
TM9SF4-202ENST00000398022 DNMBPQ6XZF7 1577 aa9.97□□□□□ -0.81
TM9SF4-202ENST00000398022 TOPBP1Q92547 1522 aa9.97□□□□□ -0.81
TM9SF4-202ENST00000398022 CCDC88BA6NC98 1476 aa9.97□□□□□ -0.81
TM9SF4-202ENST00000398022 ARHGEF11O15085 1522 aa9.96□□□□□ -0.81
TM9SF4-202ENST00000398022 C14orf37Q86TY3 774 aa9.96□□□□□ -0.82
TM9SF4-202ENST00000398022 SCAF1Q9H7N4 1312 aaKnown RBP9.93□□□□□ -0.82
TM9SF4-202ENST00000398022 IFT140Q96RY7 1462 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms