RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 TSPYL4Q9UJ04 414 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 NEK4P51957 841 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 FBXW7Q969H0 707 aa13.11□□□□□ -0.31
CCDC40-204ENST00000397545 PRPF40AO75400 957 aaKnown RBP13.1□□□□□ -0.31
CCDC40-204ENST00000397545 KDM5AP29375 1690 aaKnown RBP13.1□□□□□ -0.31
CCDC40-204ENST00000397545 FOSBP53539 338 aa13.1□□□□□ -0.31
CCDC40-204ENST00000397545 NUTM2GQ5VZR2 741 aa13.1□□□□□ -0.31
CCDC40-204ENST00000397545 ZKSCAN1P17029 563 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-204ENST00000397545 WWC1Q8IX03 1113 aa13.1□□□□□ -0.31
CCDC40-204ENST00000397545 HECW2Q9P2P5 1572 aa13.1□□□□□ -0.31
CCDC40-204ENST00000397545 TPM4P67936 248 aa13.09□□□□□ -0.31
CCDC40-204ENST00000397545 MROH2AA6NES4 1674 aa13.09□□□□□ -0.31
CCDC40-204ENST00000397545 BICD2Q8TD16 824 aa13.09□□□□□ -0.31
CCDC40-204ENST00000397545 ZNF428Q96B54 188 aa13.09□□□□□ -0.31
CCDC40-204ENST00000397545 SMC3Q9UQE7 1217 aa13.09□□□□□ -0.31
CCDC40-204ENST00000397545 ABCC3O15438 1527 aa13.09□□□□□ -0.31
CCDC40-204ENST00000397545 IFIT2P09913 472 aaKnown RBP13.08□□□□□ -0.31
CCDC40-204ENST00000397545 WAPLQ7Z5K2 1190 aa13.08□□□□□ -0.31
CCDC40-204ENST00000397545 CCAR2Q8N163 923 aaKnown RBP13.08□□□□□ -0.31
CCDC40-204ENST00000397545 FBLN1P23142 703 aa13.08□□□□□ -0.32
CCDC40-204ENST00000397545 NPC1L1Q9UHC9 1359 aa13.08□□□□□ -0.32
CCDC40-204ENST00000397545 AAMPQ13685 434 aa13.07□□□□□ -0.32
CCDC40-204ENST00000397545 CCDC27Q2M243 656 aa13.07□□□□□ -0.32
CCDC40-204ENST00000397545 FRMPD1Q5SYB0 1578 aa13.07□□□□□ -0.32
CCDC40-204ENST00000397545 MCM4P33991 863 aa13.07□□□□□ -0.32
CCDC40-204ENST00000397545 TXNDC2Q86VQ3 553 aa13.07□□□□□ -0.32
CCDC40-204ENST00000397545 CABP1Q9NZU7 370 aa13.07□□□□□ -0.32
CCDC40-204ENST00000397545 TWISTNBQ3B726 338 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-204ENST00000397545 RBM10P98175 930 aaKnown RBP13.06□□□□□ -0.32
CCDC40-204ENST00000397545 ATF7IPQ6VMQ6 1270 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 KIF3AQ9Y496 699 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 ZNF521Q96K83 1311 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 RUFY2Q8WXA3 655 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 CDK19Q9BWU1 502 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 ADGRB3O60242 1522 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-204ENST00000397545 NEO1Q92859 1461 aa13.06□□□□□ -0.32
CCDC40-204ENST00000397545 MVPQ14764 893 aaKnown RBP13.05□□□□□ -0.32
CCDC40-204ENST00000397545 RASSF8Q8NHQ8 419 aa13.05□□□□□ -0.32
CCDC40-204ENST00000397545 TNNT3P45378 269 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-204ENST00000397545 SURF6O75683 361 aaKnown RBP13.05□□□□□ -0.32
CCDC40-204ENST00000397545 AIMP1Q12904 312 aaKnown RBP13.05□□□□□ -0.32
CCDC40-204ENST00000397545 C1orf141Q5JVX7 400 aa13.05□□□□□ -0.32
CCDC40-204ENST00000397545 THUMPD2Q9BTF0 503 aaKnown RBP13.04□□□□□ -0.32
CCDC40-204ENST00000397545 LMTK2Q8IWU2 1503 aa13.04□□□□□ -0.32
CCDC40-204ENST00000397545 PES1O00541 588 aaKnown RBP13.04□□□□□ -0.32
CCDC40-204ENST00000397545 CFAP74Q9C0B2 1584 aa13.04□□□□□ -0.32
CCDC40-204ENST00000397545 INSRP06213 1382 aa13.03□□□□□ -0.32
CCDC40-204ENST00000397545 SBNO2Q9Y2G9 1366 aa13.03□□□□□ -0.32
CCDC40-204ENST00000397545 POLR3AO14802 1390 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-204ENST00000397545 NKTRP30414 1462 aaKnown RBP13.03□□□□□ -0.32
CCDC40-204ENST00000397545 NEXNQ0ZGT2 675 aa13.03□□□□□ -0.32
CCDC40-204ENST00000397545 GRPEL1Q9HAV7 217 aa13.03□□□□□ -0.32
CCDC40-204ENST00000397545 FIBPO43427 364 aa13.02□□□□□ -0.32
CCDC40-204ENST00000397545 UBTFL1P0CB47 393 aaPredicted RBP13.02□□□□□ -0.32
CCDC40-204ENST00000397545 G3BP1Q13283 466 aaKnown RBP eCLIP13.02□□□□□ -0.32
CCDC40-204ENST00000397545 TNNQ9UQP3 1299 aa13.02□□□□□ -0.32
CCDC40-204ENST00000397545 IFT57Q9NWB7 429 aa13.02□□□□□ -0.33
CCDC40-204ENST00000397545 TMEM57Q8N5G2 664 aa13.02□□□□□ -0.33
CCDC40-204ENST00000397545 A0A1W2PP64 1363 aa13.01□□□□□ -0.33
CCDC40-204ENST00000397545 CLSTN1O94985 981 aa13.01□□□□□ -0.33
CCDC40-204ENST00000397545 ANKRD36BQ8N2N9 1353 aa13.01□□□□□ -0.33
CCDC40-204ENST00000397545 SLC4A2P04920 1241 aa13.01□□□□□ -0.33
CCDC40-204ENST00000397545 CHD1LQ86WJ1 897 aa13.01□□□□□ -0.33
CCDC40-204ENST00000397545 MYOM1P52179 1685 aa13.01□□□□□ -0.33
CCDC40-204ENST00000397545 RABEP1Q15276 862 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 SULT6B1Q6IMI4 303 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 WDR63Q8IWG1 891 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 CCDC34Q96HJ3 373 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 NRXN1Q9ULB1 1477 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 FYB1O15117 783 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 ZNF771Q7L3S4 317 aaPredicted RBP13□□□□□ -0.33
CCDC40-204ENST00000397545 NLRP6P59044 892 aa13□□□□□ -0.33
CCDC40-204ENST00000397545 ESPNB1AK53 854 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 CPLX1O14810 134 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 APPP05067 770 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 DIP2CQ9Y2E4 1556 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 K7ELQ4 463 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-204ENST00000397545 PDE4CQ08493 712 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 HOMER1Q86YM7 354 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 GCC1Q96CN9 775 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 KIAA1210Q9ULL0 1709 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 TSPOAP1O95153 1857 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 RARSP54136 660 aaKnown RBP12.99□□□□□ -0.33
CCDC40-204ENST00000397545 SASS6Q6UVJ0 657 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 SSH1Q8WYL5 1049 aa12.99□□□□□ -0.33
CCDC40-204ENST00000397545 RNF20Q5VTR2 975 aa12.98□□□□□ -0.33
CCDC40-204ENST00000397545 TRMT2AQ8IZ69 625 aaKnown RBP12.98□□□□□ -0.33
CCDC40-204ENST00000397545 KDM4AO75164 1064 aa12.98□□□□□ -0.33
CCDC40-204ENST00000397545 MAP4K4O95819 1239 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-204ENST00000397545 NEUROD6Q96NK8 337 aa12.98□□□□□ -0.33
CCDC40-204ENST00000397545 CAMSAP1Q5T5Y3 1602 aa12.98□□□□□ -0.33
CCDC40-204ENST00000397545 IGHDP01880 384 aa12.98□□□□□ -0.33
CCDC40-204ENST00000397545 NCKAP5LQ9HCH0 1330 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 TBC1D2Q9BYX2 928 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 ADGRB1O14514 1584 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 QRICH2Q9H0J4 1663 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 YTHDC2Q9H6S0 1430 aaKnown RBP12.97□□□□□ -0.33
CCDC40-204ENST00000397545 SPC24Q8NBT2 197 aa12.97□□□□□ -0.33
CCDC40-204ENST00000397545 TMPOP42166 694 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms