RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 TOPAZ1Q8N9V7 1692 aa14□□□□□ -0.17
NEDD9-203ENST00000397378 CPDO75976 1380 aa13.99□□□□□ -0.17
NEDD9-203ENST00000397378 ZBTB7CA1YPR0 619 aa13.99□□□□□ -0.17
NEDD9-203ENST00000397378 CAPN15O75808 1086 aa13.99□□□□□ -0.17
NEDD9-203ENST00000397378 WNK3Q9BYP7 1800 aa13.99□□□□□ -0.17
NEDD9-203ENST00000397378 TRAK1Q9UPV9 953 aa13.98□□□□□ -0.17
NEDD9-203ENST00000397378 ADGRB1O14514 1584 aa13.97□□□□□ -0.17
NEDD9-203ENST00000397378 POLD1P28340 1107 aa13.97□□□□□ -0.17
NEDD9-203ENST00000397378 ABTB2Q8N961 1025 aa13.97□□□□□ -0.17
NEDD9-203ENST00000397378 MARCH10Q8NA82 808 aaPredicted RBP13.97□□□□□ -0.17
NEDD9-203ENST00000397378 AATKQ6ZMQ8 1374 aa13.96□□□□□ -0.17
NEDD9-203ENST00000397378 GRIN3BO60391 1043 aa13.96□□□□□ -0.17
NEDD9-203ENST00000397378 TOM1L2Q6ZVM7 507 aa13.96□□□□□ -0.17
NEDD9-203ENST00000397378 NLGN2Q8NFZ4 835 aa13.96□□□□□ -0.17
NEDD9-203ENST00000397378 ZNF526Q8TF50 670 aaPredicted RBP13.96□□□□□ -0.17
NEDD9-203ENST00000397378 PAPPAQ13219 1627 aa13.95□□□□□ -0.18
NEDD9-203ENST00000397378 BCL9O00512 1426 aa13.95□□□□□ -0.18
NEDD9-203ENST00000397378 YBX3P16989 372 aaKnown RBP eCLIP13.94□□□□□ -0.18
NEDD9-203ENST00000397378 NUDT16Q96DE0 195 aaKnown RBP13.94□□□□□ -0.18
NEDD9-203ENST00000397378 USP19O94966 1318 aa13.93□□□□□ -0.18
NEDD9-203ENST00000397378 GCP02774 474 aa13.93□□□□□ -0.18
NEDD9-203ENST00000397378 NHSQ6T4R5 1651 aa13.92□□□□□ -0.18
NEDD9-203ENST00000397378 ZNF827Q17R98 1081 aa13.92□□□□□ -0.18
NEDD9-203ENST00000397378 ACEP12821 1306 aa13.91□□□□□ -0.18
NEDD9-203ENST00000397378 NLRP13Q86W25 1043 aa13.91□□□□□ -0.18
NEDD9-203ENST00000397378 CDCA7Q9BWT1 371 aaPredicted RBP13.91□□□□□ -0.18
NEDD9-203ENST00000397378 ARHGEF28Q8N1W1 1705 aaKnown RBP13.9□□□□□ -0.18
NEDD9-203ENST00000397378 SLC16A10Q8TF71 515 aa13.9□□□□□ -0.18
NEDD9-203ENST00000397378 POLR3AO14802 1390 aaPredicted RBP13.9□□□□□ -0.18
NEDD9-203ENST00000397378 COL24A1Q17RW2 1714 aa13.9□□□□□ -0.18
NEDD9-203ENST00000397378 ACSBG1Q96GR2 724 aa13.89□□□□□ -0.19
NEDD9-203ENST00000397378 QSER1Q2KHR3 1735 aa13.88□□□□□ -0.19
NEDD9-203ENST00000397378 EXOC5O00471 708 aa13.88□□□□□ -0.19
NEDD9-203ENST00000397378 APLP1P51693 650 aa13.88□□□□□ -0.19
NEDD9-203ENST00000397378 COL13A1Q5TAT6 717 aaPredicted RBP13.88□□□□□ -0.19
NEDD9-203ENST00000397378 WDR17Q8IZU2 1322 aa13.88□□□□□ -0.19
NEDD9-203ENST00000397378 BRD4O60885 1362 aaPredicted RBP13.87□□□□□ -0.19
NEDD9-203ENST00000397378 STAC3Q96MF2 364 aa13.87□□□□□ -0.19
NEDD9-203ENST00000397378 BTAF1O14981 1849 aa13.87□□□□□ -0.19
NEDD9-203ENST00000397378 ADCY9O60503 1353 aa13.86□□□□□ -0.19
NEDD9-203ENST00000397378 TNS2Q63HR2 1409 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 CSB-PGBD3P0DP91 1061 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 TNS4Q8IZW8 715 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 CDK19Q9BWU1 502 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 LRRC4BQ9NT99 713 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 CCDC61Q9Y6R9 512 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 PNPLA7Q6ZV29 1317 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 TUBGCP6Q96RT7 1819 aa13.85□□□□□ -0.19
NEDD9-203ENST00000397378 COL18A1P39060 1754 aa13.84□□□□□ -0.19
NEDD9-203ENST00000397378 RGPD5Q99666 1765 aa13.84□□□□□ -0.19
NEDD9-203ENST00000397378 PRELPP51888 382 aa13.84□□□□□ -0.19
NEDD9-203ENST00000397378 USP6P35125 1406 aa13.83□□□□□ -0.2
NEDD9-203ENST00000397378 DNAJC5GQ8N7S2 189 aa13.83□□□□□ -0.2
NEDD9-203ENST00000397378 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
NEDD9-203ENST00000397378 TFCP2L1Q9NZI6 479 aa13.83□□□□□ -0.2
NEDD9-203ENST00000397378 SLIT3O75094 1523 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 PLEKHG3A1L390 1219 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 KIF3CO14782 793 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 DCAF11Q8TEB1 546 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 KDM2AQ9Y2K7 1162 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 AXIN2Q9Y2T1 843 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 KAT6BQ8WYB5 2073 aa13.82□□□□□ -0.2
NEDD9-203ENST00000397378 NLRP6P59044 892 aa13.81□□□□□ -0.2
NEDD9-203ENST00000397378 CARD10Q9BWT7 1032 aa13.81□□□□□ -0.2
NEDD9-203ENST00000397378 WDR90Q96KV7 1748 aa13.81□□□□□ -0.2
NEDD9-203ENST00000397378 MSH5O43196 834 aa13.8□□□□□ -0.2
NEDD9-203ENST00000397378 CPSF1Q10570 1443 aaKnown RBP13.8□□□□□ -0.2
NEDD9-203ENST00000397378 ABCC6O95255 1503 aa13.8□□□□□ -0.2
NEDD9-203ENST00000397378 TRPM1Q7Z4N2 1603 aa13.79□□□□□ -0.2
NEDD9-203ENST00000397378 KIAA1210Q9ULL0 1709 aa13.79□□□□□ -0.2
NEDD9-203ENST00000397378 CCDC7Q96M83 1385 aa13.79□□□□□ -0.2
NEDD9-203ENST00000397378 RAB3GAP2Q9H2M9 1393 aa13.79□□□□□ -0.2
NEDD9-203ENST00000397378 SLC27A3Q5K4L6 730 aa13.78□□□□□ -0.2
NEDD9-203ENST00000397378 PPIP5K1Q6PFW1 1433 aa13.78□□□□□ -0.2
NEDD9-203ENST00000397378 SOX12O15370 315 aa13.76□□□□□ -0.21
NEDD9-203ENST00000397378 TOMM70O94826 608 aa13.76□□□□□ -0.21
NEDD9-203ENST00000397378 SLC34A2O95436 690 aa13.76□□□□□ -0.21
NEDD9-203ENST00000397378 KCNQ4P56696 695 aa13.76□□□□□ -0.21
NEDD9-203ENST00000397378 MSL1Q68DK7 614 aa13.76□□□□□ -0.21
NEDD9-203ENST00000397378 WWC3Q9ULE0 1092 aa13.76□□□□□ -0.21
NEDD9-203ENST00000397378 PIK3C2AO00443 1686 aa13.75□□□□□ -0.21
NEDD9-203ENST00000397378 SRPK2P78362 688 aaKnown RBP13.75□□□□□ -0.21
NEDD9-203ENST00000397378 KLRG1Q96E93 195 aa13.75□□□□□ -0.21
NEDD9-203ENST00000397378 ARHGEF25Q86VW2 580 aa13.74□□□□□ -0.21
NEDD9-203ENST00000397378 CD2APQ9Y5K6 639 aa13.74□□□□□ -0.21
NEDD9-203ENST00000397378 HTRA3P83110 453 aa13.73□□□□□ -0.21
NEDD9-203ENST00000397378 JMYQ8N9B5 988 aa13.73□□□□□ -0.21
NEDD9-203ENST00000397378 QRICH2Q9H0J4 1663 aa13.72□□□□□ -0.21
NEDD9-203ENST00000397378 IL2RBP14784 551 aa13.71□□□□□ -0.21
NEDD9-203ENST00000397378 COL23A1Q86Y22 540 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-203ENST00000397378 KCNH5Q8NCM2 988 aa13.71□□□□□ -0.21
NEDD9-203ENST00000397378 LY75O60449 1722 aa13.7□□□□□ -0.22
NEDD9-203ENST00000397378 IGSF1Q8N6C5 1336 aa13.7□□□□□ -0.22
NEDD9-203ENST00000397378 SYTL4Q96C24 671 aaPredicted RBP13.7□□□□□ -0.22
NEDD9-203ENST00000397378 CABP2Q9NPB3 220 aa13.7□□□□□ -0.22
NEDD9-203ENST00000397378 NLRP2Q9NX02 1062 aa13.7□□□□□ -0.22
NEDD9-203ENST00000397378 CCNL1Q9UK58 526 aaPredicted RBP13.68□□□□□ -0.22
NEDD9-203ENST00000397378 PCNTO95613 3336 aa13.67□□□□□ -0.22
NEDD9-203ENST00000397378 DOT1LQ8TEK3 1739 aa13.67□□□□□ -0.22
NEDD9-203ENST00000397378 C16orf71Q8IYS4 520 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms