RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MTHFSP49914 203 aa14.23□□□□□ -0.13
CUX1-204ENST00000393824 NSD2O96028 1365 aa14.23□□□□□ -0.13
CUX1-204ENST00000393824 BRINP3Q76B58 766 aa14.22□□□□□ -0.13
CUX1-204ENST00000393824 PSME1Q06323 249 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 RRS1Q15050 365 aaKnown RBP14.21□□□□□ -0.13
CUX1-204ENST00000393824 SLAIN2Q9P270 581 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 KIF20BQ96Q89 1820 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 OVOS2A0A0J9YW53 1432 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 OVOS2Q6IE36 1432 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 PIK3C2AO00443 1686 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 RRP9O43818 475 aaKnown RBP14.21□□□□□ -0.13
CUX1-204ENST00000393824 CLCN1P35523 988 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.21□□□□□ -0.13
CUX1-204ENST00000393824 EMILIN1Q9Y6C2 1016 aa14.21□□□□□ -0.13
CUX1-204ENST00000393824 USP19O94966 1318 aa14.2□□□□□ -0.14
CUX1-204ENST00000393824 ABTB2Q8N961 1025 aa14.19□□□□□ -0.14
CUX1-204ENST00000393824 COG3Q96JB2 828 aa14.19□□□□□ -0.14
CUX1-204ENST00000393824 POLKQ9UBT6 870 aa14.19□□□□□ -0.14
CUX1-204ENST00000393824 ANKRD26Q9UPS8 1709 aa14.18□□□□□ -0.14
CUX1-204ENST00000393824 NLRP6P59044 892 aa14.18□□□□□ -0.14
CUX1-204ENST00000393824 KRT28Q7Z3Y7 464 aa14.18□□□□□ -0.14
CUX1-204ENST00000393824 BECN1Q14457 450 aa14.18□□□□□ -0.14
CUX1-204ENST00000393824 HSP90AA2PQ14568 343 aaPredicted RBP14.18□□□□□ -0.14
CUX1-204ENST00000393824 ADAMTS8Q9UP79 889 aa14.18□□□□□ -0.14
CUX1-204ENST00000393824 ZNF521Q96K83 1311 aa14.17□□□□□ -0.14
CUX1-204ENST00000393824 PNNQ9H307 717 aaKnown RBP14.17□□□□□ -0.14
CUX1-204ENST00000393824 TTC21AQ8NDW8 1320 aa14.17□□□□□ -0.14
CUX1-204ENST00000393824 MARF1Q9Y4F3 1742 aaKnown RBP14.17□□□□□ -0.14
CUX1-204ENST00000393824 DUSP27Q5VZP5 1158 aa14.16□□□□□ -0.14
CUX1-204ENST00000393824 VIRMAQ69YN4 1812 aaKnown RBP14.16□□□□□ -0.14
CUX1-204ENST00000393824 FSD2A1L4K1 749 aa14.16□□□□□ -0.14
CUX1-204ENST00000393824 LMOD2Q6P5Q4 547 aa14.16□□□□□ -0.14
CUX1-204ENST00000393824 ANTXR1Q9H6X2 564 aa14.16□□□□□ -0.14
CUX1-204ENST00000393824 RGS3P49796 1198 aa14.15□□□□□ -0.14
CUX1-204ENST00000393824 HSP90AA1P07900 732 aaKnown RBP14.15□□□□□ -0.14
CUX1-204ENST00000393824 XRCC6P12956 609 aaKnown RBP eCLIP14.15□□□□□ -0.14
CUX1-204ENST00000393824 USP31Q70CQ4 1352 aa14.15□□□□□ -0.14
CUX1-204ENST00000393824 PXDNQ92626 1479 aa14.15□□□□□ -0.15
CUX1-204ENST00000393824 GOLGA2Q08379 1002 aa14.14□□□□□ -0.15
CUX1-204ENST00000393824 TRPM3Q9HCF6 1732 aaPredicted RBP14.14□□□□□ -0.15
CUX1-204ENST00000393824 NGEFQ8N5V2 710 aa14.14□□□□□ -0.15
CUX1-204ENST00000393824 NAP1L5Q96NT1 182 aaPredicted RBP14.14□□□□□ -0.15
CUX1-204ENST00000393824 COL3A1P02461 1466 aaPredicted RBP14.14□□□□□ -0.15
CUX1-204ENST00000393824 WDR43Q15061 677 aaKnown RBP eCLIP14.13□□□□□ -0.15
CUX1-204ENST00000393824 CABLES1Q8TDN4 633 aa14.13□□□□□ -0.15
CUX1-204ENST00000393824 TRMT2AQ8IZ69 625 aaKnown RBP14.13□□□□□ -0.15
CUX1-204ENST00000393824 MAP3K19Q56UN5 1328 aa14.13□□□□□ -0.15
CUX1-204ENST00000393824 KIF1AQ12756 1690 aa14.13□□□□□ -0.15
CUX1-204ENST00000393824 MAP2P11137 1827 aaKnown RBP14.12□□□□□ -0.15
CUX1-204ENST00000393824 SHPRHQ149N8 1683 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 AATKQ6ZMQ8 1374 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 PNPLA6Q8IY17 1366 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 NPHP3Q7Z494 1330 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 GOLGA6L3A6NEY3 463 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 HSP90AB2PQ58FF8 381 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 CCDC146Q8IYE0 955 aa14.12□□□□□ -0.15
CUX1-204ENST00000393824 PEAK1Q9H792 1746 aa14.11□□□□□ -0.15
CUX1-204ENST00000393824 SLFN5Q08AF3 891 aa14.11□□□□□ -0.15
CUX1-204ENST00000393824 MAPK8IP3Q9UPT6 1336 aa14.09□□□□□ -0.15
CUX1-204ENST00000393824 SOS2Q07890 1332 aaPredicted RBP14.09□□□□□ -0.15
CUX1-204ENST00000393824 SLKQ9H2G2 1235 aaPredicted RBP14.09□□□□□ -0.15
CUX1-204ENST00000393824 MED1Q15648 1581 aaPredicted RBP14.09□□□□□ -0.15
CUX1-204ENST00000393824 SPATA31A3Q5VYP0 1347 aa14.08□□□□□ -0.15
CUX1-204ENST00000393824 ALS2Q96Q42 1657 aa14.08□□□□□ -0.15
CUX1-204ENST00000393824 PIP4K2BP78356 416 aa14.08□□□□□ -0.16
CUX1-204ENST00000393824 SEC24BO95487 1268 aa14.08□□□□□ -0.16
CUX1-204ENST00000393824 GCP02774 474 aa14.08□□□□□ -0.16
CUX1-204ENST00000393824 NFAT5O94916 1531 aa14.08□□□□□ -0.16
CUX1-204ENST00000393824 TNS3Q68CZ2 1445 aa14.07□□□□□ -0.16
CUX1-204ENST00000393824 ROBO1Q9Y6N7 1651 aa14.07□□□□□ -0.16
CUX1-204ENST00000393824 U2SURPO15042 1029 aaKnown RBP14.07□□□□□ -0.16
CUX1-204ENST00000393824 IL13P35225 146 aa14.07□□□□□ -0.16
CUX1-204ENST00000393824 FGD1P98174 961 aa14.07□□□□□ -0.16
CUX1-204ENST00000393824 ZBTB7CA1YPR0 619 aa14.06□□□□□ -0.16
CUX1-204ENST00000393824 U2AF1L5P0DN76 240 aaPredicted RBP14.06□□□□□ -0.16
CUX1-204ENST00000393824 MRE11P49959 708 aa14.06□□□□□ -0.16
CUX1-204ENST00000393824 RBM10P98175 930 aaKnown RBP14.06□□□□□ -0.16
CUX1-204ENST00000393824 U2AF1Q01081 240 aaKnown RBP eCLIP14.06□□□□□ -0.165e-6■□□□□ 11.2
CUX1-204ENST00000393824 SBNO1A3KN83 1393 aa14.06□□□□□ -0.16
CUX1-204ENST00000393824 CDK12Q9NYV4 1490 aaPredicted RBP14.06□□□□□ -0.16
CUX1-204ENST00000393824 DIAPH1O60610 1272 aaKnown RBP14.06□□□□□ -0.16
CUX1-204ENST00000393824 AAMPQ13685 434 aa14.06□□□□□ -0.16
CUX1-204ENST00000393824 EIF4A2Q14240 407 aaKnown RBP14.06□□□□□ -0.16
CUX1-204ENST00000393824 CFAP53Q96M91 514 aa14.06□□□□□ -0.16
CUX1-204ENST00000393824 USP54Q70EL1 1684 aa14.05□□□□□ -0.16
CUX1-204ENST00000393824 IGHDP01880 384 aa14.05□□□□□ -0.16
CUX1-204ENST00000393824 MCM4P33991 863 aa14.05□□□□□ -0.16
CUX1-204ENST00000393824 ZC3H6P61129 1189 aaKnown RBP14.05□□□□□ -0.16
CUX1-204ENST00000393824 PANK2Q9BZ23 570 aa14.05□□□□□ -0.16
CUX1-204ENST00000393824 E9PSI1 815 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 HMOX1P09601 288 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 PDE3AQ14432 1141 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 ISY1Q9ULR0 285 aaKnown RBP14.04□□□□□ -0.16
CUX1-204ENST00000393824 AXIN2Q9Y2T1 843 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 SLIT3O75094 1523 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 A0A0U1RQG5 324 aaPredicted RBP14.04□□□□□ -0.16
CUX1-204ENST00000393824 HOXC9P31274 260 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 AEBP1Q8IUX7 1158 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 NHSL1Q5SYE7 1610 aa14.04□□□□□ -0.16
CUX1-204ENST00000393824 UBAP1LF5GYI3 381 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms