RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 MAP3K4Q9Y6R4 1608 aa13□□□□□ -0.33
CALD1-203ENST00000393118 DNTTIP2Q5QJE6 756 aaKnown RBP13□□□□□ -0.33
CALD1-203ENST00000393118 C8orf58Q8NAV2 365 aa13□□□□□ -0.33
CALD1-203ENST00000393118 TBC1D2Q9BYX2 928 aa13□□□□□ -0.33
CALD1-203ENST00000393118 FAM13BQ9NYF5 915 aa13□□□□□ -0.33
CALD1-203ENST00000393118 MSNP26038 577 aaKnown RBP12.99□□□□□ -0.33
CALD1-203ENST00000393118 ARAP3Q8WWN8 1544 aa12.99□□□□□ -0.33
CALD1-203ENST00000393118 TEFQ10587 303 aa12.99□□□□□ -0.33
CALD1-203ENST00000393118 IL16Q14005 1332 aa12.99□□□□□ -0.33
CALD1-203ENST00000393118 ZNF428Q96B54 188 aa12.99□□□□□ -0.33
CALD1-203ENST00000393118 CFAP44Q96MT7 982 aa12.99□□□□□ -0.33
CALD1-203ENST00000393118 CSB-PGBD3P0DP91 1061 aa12.98□□□□□ -0.33
CALD1-203ENST00000393118 KCNJ4P48050 445 aa12.98□□□□□ -0.33
CALD1-203ENST00000393118 MCCP23508 829 aa12.98□□□□□ -0.33
CALD1-203ENST00000393118 RNF17Q9BXT8 1623 aaKnown RBP12.98□□□□□ -0.33
CALD1-203ENST00000393118 F6X3S4 739 aa12.98□□□□□ -0.33
CALD1-203ENST00000393118 CDC45O75419 566 aa12.98□□□□□ -0.33
CALD1-203ENST00000393118 THEMISQ8N1K5 641 aaPredicted RBP12.97□□□□□ -0.33
CALD1-203ENST00000393118 TBC1D32Q96NH3 1257 aa12.97□□□□□ -0.33
CALD1-203ENST00000393118 PPP6R1Q9UPN7 881 aa12.97□□□□□ -0.33
CALD1-203ENST00000393118 NEO1Q92859 1461 aa12.97□□□□□ -0.33
CALD1-203ENST00000393118 SMARCA5O60264 1052 aaPredicted RBP12.96□□□□□ -0.33
CALD1-203ENST00000393118 VAMP4O75379 141 aa12.96□□□□□ -0.33
CALD1-203ENST00000393118 FOXD4L6Q3SYB3 417 aaPredicted RBP12.96□□□□□ -0.33
CALD1-203ENST00000393118 FOXD4L3Q6VB84 417 aaPredicted RBP12.96□□□□□ -0.33
CALD1-203ENST00000393118 ESCO1Q5FWF5 840 aa12.96□□□□□ -0.33
CALD1-203ENST00000393118 GAS2L2Q8NHY3 880 aa12.96□□□□□ -0.33
CALD1-203ENST00000393118 ABCA6Q8N139 1617 aa12.96□□□□□ -0.33
CALD1-203ENST00000393118 RBM10P98175 930 aaKnown RBP12.96□□□□□ -0.33
CALD1-203ENST00000393118 XPCQ01831 940 aaPredicted RBP12.96□□□□□ -0.33
CALD1-203ENST00000393118 USHBP1Q8N6Y0 703 aa12.96□□□□□ -0.33
CALD1-203ENST00000393118 HDAC1Q13547 482 aaPredicted RBP12.96□□□□□ -0.34
CALD1-203ENST00000393118 ABCC3O15438 1527 aa12.95□□□□□ -0.34
CALD1-203ENST00000393118 ST18O60284 1047 aa12.95□□□□□ -0.34
CALD1-203ENST00000393118 EIF4A2Q14240 407 aaKnown RBP12.95□□□□□ -0.34
CALD1-203ENST00000393118 ZBTB40Q9NUA8 1239 aa12.95□□□□□ -0.34
CALD1-203ENST00000393118 TNRQ92752 1358 aa12.95□□□□□ -0.34
CALD1-203ENST00000393118 TTC21BQ7Z4L5 1316 aa12.95□□□□□ -0.34
CALD1-203ENST00000393118 ZMYM3Q14202 1370 aa12.95□□□□□ -0.34
CALD1-203ENST00000393118 INTS3Q68E01 1043 aaKnown RBP12.94□□□□□ -0.34
CALD1-203ENST00000393118 PLEKHF1Q96S99 279 aa12.94□□□□□ -0.34
CALD1-203ENST00000393118 MRPL50Q8N5N7 158 aaKnown RBP12.94□□□□□ -0.34
CALD1-203ENST00000393118 HECW2Q9P2P5 1572 aa12.94□□□□□ -0.34
CALD1-203ENST00000393118 DDX11L8A8MPP1 907 aa12.94□□□□□ -0.34
CALD1-203ENST00000393118 KIAA1211Q6ZU35 1233 aa12.94□□□□□ -0.34
CALD1-203ENST00000393118 ANO2Q9NQ90 1003 aa12.94□□□□□ -0.34
CALD1-203ENST00000393118 ABCA9Q8IUA7 1624 aa12.94□□□□□ -0.34
CALD1-203ENST00000393118 FOXO3O43524 673 aa12.93□□□□□ -0.34
CALD1-203ENST00000393118 EXOC6BQ9Y2D4 811 aa12.93□□□□□ -0.34
CALD1-203ENST00000393118 C1orf141Q5JVX7 400 aa12.93□□□□□ -0.34
CALD1-203ENST00000393118 LAMC1P11047 1609 aa12.93□□□□□ -0.34
CALD1-203ENST00000393118 IL13P35225 146 aa12.93□□□□□ -0.34
CALD1-203ENST00000393118 REC8O95072 547 aa12.93□□□□□ -0.34
CALD1-203ENST00000393118 PTMAP06454 111 aaKnown RBP12.93□□□□□ -0.34
CALD1-203ENST00000393118 DDX49Q9Y6V7 483 aaKnown RBP12.93□□□□□ -0.34
CALD1-203ENST00000393118 CEP152O94986 1710 aa12.92□□□□□ -0.34
CALD1-203ENST00000393118 HDGFL1Q5TGJ6 251 aa12.92□□□□□ -0.34
CALD1-203ENST00000393118 CCDC30Q5VVM6 783 aa12.92□□□□□ -0.34
CALD1-203ENST00000393118 TRAK2O60296 914 aa12.92□□□□□ -0.34
CALD1-203ENST00000393118 NUCB1Q02818 461 aa12.92□□□□□ -0.34
CALD1-203ENST00000393118 PPRC1Q5VV67 1664 aaKnown RBP12.92□□□□□ -0.34
CALD1-203ENST00000393118 UBTFL1P0CB47 393 aaPredicted RBP12.91□□□□□ -0.34
CALD1-203ENST00000393118 INO80Q9ULG1 1556 aaPredicted RBP12.91□□□□□ -0.34
CALD1-203ENST00000393118 SMC5Q8IY18 1101 aa12.91□□□□□ -0.34
CALD1-203ENST00000393118 ZNF330Q9Y3S2 320 aaPredicted RBP12.91□□□□□ -0.34
CALD1-203ENST00000393118 GNAI2P04899 355 aa12.91□□□□□ -0.34
CALD1-203ENST00000393118 C9orf78Q9NZ63 289 aaPredicted RBP12.91□□□□□ -0.34
CALD1-203ENST00000393118 AIMP1Q12904 312 aaKnown RBP12.9□□□□□ -0.34
CALD1-203ENST00000393118 MCM4P33991 863 aa12.9□□□□□ -0.34
CALD1-203ENST00000393118 TBC1D9Q6ZT07 1266 aa12.9□□□□□ -0.34
CALD1-203ENST00000393118 MEIS3Q99687 375 aa12.9□□□□□ -0.34
CALD1-203ENST00000393118 SURF6O75683 361 aaKnown RBP12.9□□□□□ -0.34
CALD1-203ENST00000393118 PDE4CQ08493 712 aa12.9□□□□□ -0.34
CALD1-203ENST00000393118 C16orf71Q8IYS4 520 aaPredicted RBP12.9□□□□□ -0.34
CALD1-203ENST00000393118 METP08581 1390 aa12.9□□□□□ -0.35
CALD1-203ENST00000393118 ZFYVE9O95405 1425 aa12.89□□□□□ -0.35
CALD1-203ENST00000393118 PLCB2Q00722 1185 aa12.89□□□□□ -0.35
CALD1-203ENST00000393118 RPAP2Q8IXW5 612 aaPredicted RBP12.89□□□□□ -0.35
CALD1-203ENST00000393118 IL1RAPL2Q9NP60 686 aa12.89□□□□□ -0.35
CALD1-203ENST00000393118 CCDC9Q9Y3X0 531 aaKnown RBP12.89□□□□□ -0.35
CALD1-203ENST00000393118 ZBTB7BO15156 539 aaPredicted RBP12.89□□□□□ -0.35
CALD1-203ENST00000393118 GNAI3P08754 354 aa12.89□□□□□ -0.35
CALD1-203ENST00000393118 TAOK2Q9UL54 1235 aa12.89□□□□□ -0.35
CALD1-203ENST00000393118 ADGRB3O60242 1522 aa12.89□□□□□ -0.35
CALD1-203ENST00000393118 TSHZ3Q63HK5 1081 aa12.88□□□□□ -0.35
CALD1-203ENST00000393118 GNAT3A8MTJ3 354 aa12.88□□□□□ -0.35
CALD1-203ENST00000393118 CCT4P50991 539 aaKnown RBP12.88□□□□□ -0.35
CALD1-203ENST00000393118 BMP2KLQ5H9B9 411 aa12.88□□□□□ -0.35
CALD1-203ENST00000393118 ARHGAP45Q92619 1136 aa12.88□□□□□ -0.35
CALD1-203ENST00000393118 KIDINS220Q9ULH0 1771 aa12.88□□□□□ -0.35
CALD1-203ENST00000393118 CHMP3Q9Y3E7 222 aa12.88□□□□□ -0.35
CALD1-203ENST00000393118 IQGAP1P46940 1657 aa12.87□□□□□ -0.35
CALD1-203ENST00000393118 MTHFSDQ2M296 383 aaKnown RBP12.87□□□□□ -0.35
CALD1-203ENST00000393118 RBM42Q9BTD8 480 aaKnown RBP12.87□□□□□ -0.35
CALD1-203ENST00000393118 MAP4K4O95819 1239 aaPredicted RBP12.87□□□□□ -0.35
CALD1-203ENST00000393118 LTKP29376 864 aa12.87□□□□□ -0.35
CALD1-203ENST00000393118 MCTP1Q6DN14 999 aa12.87□□□□□ -0.35
CALD1-203ENST00000393118 ZNF530Q6P9A1 599 aaPredicted RBP12.87□□□□□ -0.35
CALD1-203ENST00000393118 RRAGDQ9NQL2 400 aaPredicted RBP12.87□□□□□ -0.35
CALD1-203ENST00000393118 CFAP74Q9C0B2 1584 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms