RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 ZNF521Q96K83 1311 aa10.11□□□□□ -0.79
HPS4-201ENST00000336873 CDC45O75419 566 aa10.11□□□□□ -0.79
HPS4-201ENST00000336873 JARID2Q92833 1246 aaPredicted RBP10.11□□□□□ -0.79
HPS4-201ENST00000336873 SIL1Q9H173 461 aa10.11□□□□□ -0.79
HPS4-201ENST00000336873 TNPO1Q92973 898 aaKnown RBP10.1□□□□□ -0.79
HPS4-201ENST00000336873 PRDM15P57071 1507 aaPredicted RBP10.1□□□□□ -0.79
HPS4-201ENST00000336873 RPGRIP1LQ68CZ1 1315 aa10.1□□□□□ -0.79
HPS4-201ENST00000336873 RNF17Q9BXT8 1623 aaKnown RBP10.1□□□□□ -0.79
HPS4-201ENST00000336873 DDX11L8A8MPP1 907 aa10.1□□□□□ -0.79
HPS4-201ENST00000336873 KDM4AO75164 1064 aa10.1□□□□□ -0.79
HPS4-201ENST00000336873 TTC37Q6PGP7 1564 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 ZMYM4Q5VZL5 1548 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 VAMP4O75379 141 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 PSME1Q06323 249 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 FBXW7Q969H0 707 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 C9orf78Q9NZ63 289 aaPredicted RBP10.09□□□□□ -0.79
HPS4-201ENST00000336873 WASLO00401 505 aaPredicted RBP10.09□□□□□ -0.79
HPS4-201ENST00000336873 ZMYND15Q9H091 742 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 MCCP23508 829 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 ESCO1Q5FWF5 840 aa10.09□□□□□ -0.79
HPS4-201ENST00000336873 PIP4K2AP48426 406 aaPredicted RBP10.08□□□□□ -0.8
HPS4-201ENST00000336873 G2E3Q7L622 706 aa10.08□□□□□ -0.8
HPS4-201ENST00000336873 ZBTB40Q9NUA8 1239 aa10.08□□□□□ -0.8
HPS4-201ENST00000336873 POLR3AO14802 1390 aaPredicted RBP10.08□□□□□ -0.8
HPS4-201ENST00000336873 K7ELQ4 463 aaPredicted RBP10.08□□□□□ -0.8
HPS4-201ENST00000336873 XRCC6P12956 609 aaKnown RBP eCLIP10.08□□□□□ -0.86e-6■■■■■ 31.4
HPS4-201ENST00000336873 HDGFL1Q5TGJ6 251 aa10.08□□□□□ -0.8
HPS4-201ENST00000336873 INTS3Q68E01 1043 aaKnown RBP10.08□□□□□ -0.8
HPS4-201ENST00000336873 ATP10AO60312 1499 aa10.07□□□□□ -0.8
HPS4-201ENST00000336873 PTPRTO14522 1441 aa10.07□□□□□ -0.8
HPS4-201ENST00000336873 ZC3H6P61129 1189 aaKnown RBP10.07□□□□□ -0.8
HPS4-201ENST00000336873 RBM27Q9P2N5 1060 aaKnown RBP10.07□□□□□ -0.8
HPS4-201ENST00000336873 ARHGEF5Q12774 1597 aa10.07□□□□□ -0.8
HPS4-201ENST00000336873 VPS37CA5D8V6 355 aaPredicted RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 GOLGA6L4A6NEF3 574 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 UBTFL1P0CB47 393 aaPredicted RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 CD2BP2O95400 341 aaKnown RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 GAS2L2Q8NHY3 880 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 GCC1Q96CN9 775 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 GRPEL1Q9HAV7 217 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 ACEP12821 1306 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 MYL6BP14649 208 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 CWC27Q6UX04 472 aaKnown RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 TRMT2AQ8IZ69 625 aaKnown RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 ZGPATQ8N5A5 531 aaKnown RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 PIK3C2GO75747 1445 aa10.06□□□□□ -0.8
HPS4-201ENST00000336873 ZCCHC11Q5TAX3 1644 aaKnown RBP10.06□□□□□ -0.8
HPS4-201ENST00000336873 REC8O95072 547 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 NASPP49321 788 aaPredicted RBP10.05□□□□□ -0.8
HPS4-201ENST00000336873 PDE4CQ08493 712 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 MPRIPQ6WCQ1 1025 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 RSPH6AQ9H0K4 717 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 ANKRD36BQ8N2N9 1353 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 ATP7AQ04656 1500 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 LAMC1P11047 1609 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 RBM10P98175 930 aaKnown RBP10.05□□□□□ -0.8
HPS4-201ENST00000336873 SRGAP3O43295 1099 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 NUCB1Q02818 461 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 EIF4A2Q14240 407 aaKnown RBP10.05□□□□□ -0.8
HPS4-201ENST00000336873 CFAP44Q96MT7 982 aa10.05□□□□□ -0.8
HPS4-201ENST00000336873 CCDC85AQ96PX6 553 aaPredicted RBP10.05□□□□□ -0.8
HPS4-201ENST00000336873 LRRFIP2Q9Y608 721 aaKnown RBP10.04□□□□□ -0.8
HPS4-201ENST00000336873 IQGAP1P46940 1657 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 ERVK-7P63135 1459 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 ZBTB7BO15156 539 aaPredicted RBP10.04□□□□□ -0.8
HPS4-201ENST00000336873 FIBPO43427 364 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 SDSP20132 328 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 MRPL50Q8N5N7 158 aaKnown RBP10.04□□□□□ -0.8
HPS4-201ENST00000336873 TCEANC2Q96MN5 208 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 NLRP2Q9NX02 1062 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 FAM13BQ9NYF5 915 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 AMOTL2Q9Y2J4 779 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 STK3Q13188 491 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 PKP1Q13835 747 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 DRC7Q8IY82 874 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 NPATQ14207 1427 aa10.04□□□□□ -0.8
HPS4-201ENST00000336873 SPG7Q9UQ90 795 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 KAT6BQ8WYB5 2073 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 CLASP1Q7Z460 1538 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 GNAI2P04899 355 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 CEBPZQ03701 1054 aaKnown RBP10.03□□□□□ -0.8
HPS4-201ENST00000336873 HSP90AA2PQ14568 343 aaPredicted RBP10.03□□□□□ -0.8
HPS4-201ENST00000336873 FERMT3Q86UX7 667 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 DIAPH3Q9NSV4 1193 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 SYCE3A1L190 88 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 PREX2Q70Z35 1606 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 SHPRHQ149N8 1683 aa10.03□□□□□ -0.8
HPS4-201ENST00000336873 HSP90B1P14625 803 aaKnown RBP10.02□□□□□ -0.8
HPS4-201ENST00000336873 MRE11P49959 708 aa10.02□□□□□ -0.8
HPS4-201ENST00000336873 CPA1P15085 419 aa10.02□□□□□ -0.81
HPS4-201ENST00000336873 TAF7Q15545 349 aaPredicted RBP10.02□□□□□ -0.81
HPS4-201ENST00000336873 MTHFSDQ2M296 383 aaKnown RBP10.02□□□□□ -0.81
HPS4-201ENST00000336873 C1orf141Q5JVX7 400 aa10.02□□□□□ -0.81
HPS4-201ENST00000336873 SMC5Q8IY18 1101 aa10.02□□□□□ -0.81
HPS4-201ENST00000336873 RRAGDQ9NQL2 400 aaPredicted RBP10.02□□□□□ -0.81
HPS4-201ENST00000336873 IFT57Q9NWB7 429 aa10.02□□□□□ -0.81
HPS4-201ENST00000336873 R3HCC1Q9Y3T6 440 aaKnown RBP10.02□□□□□ -0.81
HPS4-201ENST00000336873 POGZQ7Z3K3 1410 aa10.01□□□□□ -0.81
HPS4-201ENST00000336873 IFIT2P09913 472 aaKnown RBP10.01□□□□□ -0.81
HPS4-201ENST00000336873 HDAC1Q13547 482 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms