RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 C22orf23Q9BZE7 217 aa14.58□□□□□ -0.07
SHMT2-201ENST00000328923 GEMIN8Q9NWZ8 242 aaKnown RBP14.58□□□□□ -0.07
SHMT2-201ENST00000328923 EFCAB6Q5THR3 1501 aa14.58□□□□□ -0.08
SHMT2-201ENST00000328923 REREQ9P2R6 1566 aa14.58□□□□□ -0.08
SHMT2-201ENST00000328923 LOC102724159A0A0B4J2E5 919 aa14.58□□□□□ -0.08
SHMT2-201ENST00000328923 ZNF445P59923 1031 aa14.58□□□□□ -0.08
SHMT2-201ENST00000328923 PWP2Q15269 919 aaKnown RBP14.58□□□□□ -0.08
SHMT2-201ENST00000328923 KLHL40Q2TBA0 621 aa14.57□□□□□ -0.08
SHMT2-201ENST00000328923 YY1AP1Q9H869 796 aa14.57□□□□□ -0.08
SHMT2-201ENST00000328923 LMTK2Q8IWU2 1503 aa14.57□□□□□ -0.08
SHMT2-201ENST00000328923 OGFRQ9NZT2 677 aa14.57□□□□□ -0.08
SHMT2-201ENST00000328923 KNSTRNQ9Y448 316 aa14.56□□□□□ -0.08
SHMT2-201ENST00000328923 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.56□□□□□ -0.083e-7■■□□□ 13.1
SHMT2-201ENST00000328923 MFAP1P55081 439 aaKnown RBP14.56□□□□□ -0.08
SHMT2-201ENST00000328923 FAM193AP78312 1265 aa14.56□□□□□ -0.08
SHMT2-201ENST00000328923 ARHGEF40Q8TER5 1519 aa14.56□□□□□ -0.08
SHMT2-201ENST00000328923 ERICH4A6NGS2 130 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 PRIM1P49642 420 aaKnown RBP14.55□□□□□ -0.08
SHMT2-201ENST00000328923 ZSCAN23Q3MJ62 389 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 EP400NLQ6ZTU2 488 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 FEZ1Q99689 392 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 MADDQ8WXG6 1647 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 MYOM1P52179 1685 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 PTPRMP28827 1452 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 CAVIN1Q6NZI2 390 aaKnown RBP14.55□□□□□ -0.08
SHMT2-201ENST00000328923 PMFBP1Q8TBY8 1022 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 ANKRD7Q92527 254 aa14.55□□□□□ -0.08
SHMT2-201ENST00000328923 FOXD4L1Q9NU39 408 aa14.54□□□□□ -0.08
SHMT2-201ENST00000328923 NEURL4Q96JN8 1562 aa14.54□□□□□ -0.08
SHMT2-201ENST00000328923 PATL2C9JE40 543 aaKnown RBP14.53□□□□□ -0.08
SHMT2-201ENST00000328923 CDCA8Q53HL2 280 aa14.53□□□□□ -0.08
SHMT2-201ENST00000328923 C17orf53Q8N3J3 647 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-201ENST00000328923 FEZ2Q9UHY8 353 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-201ENST00000328923 CIZ1Q9ULV3 898 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-201ENST00000328923 UGGT1Q9NYU2 1555 aa14.53□□□□□ -0.08
SHMT2-201ENST00000328923 BCAR3O75815 825 aa14.53□□□□□ -0.08
SHMT2-201ENST00000328923 PTMAP06454 111 aaKnown RBP14.53□□□□□ -0.08
SHMT2-201ENST00000328923 SSFA2P28290 1259 aa14.53□□□□□ -0.08
SHMT2-201ENST00000328923 SMC5Q8IY18 1101 aa14.53□□□□□ -0.08
SHMT2-201ENST00000328923 CALCOCO1Q9P1Z2 691 aa14.53□□□□□ -0.08
SHMT2-201ENST00000328923 TERF2Q15554 542 aa14.52□□□□□ -0.08
SHMT2-201ENST00000328923 MPNDQ8N594 471 aa14.52□□□□□ -0.08
SHMT2-201ENST00000328923 ZNF622Q969S3 477 aaKnown RBP eCLIP14.52□□□□□ -0.08
SHMT2-201ENST00000328923 SIGLEC1Q9BZZ2 1709 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 AGLP35573 1532 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 KIF1BO60333 1816 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 GOLGA6L22H0YM25 854 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 AXDND1Q5T1B0 1012 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-201ENST00000328923 TSPYL1Q9H0U9 437 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 NOLC1Q14978 699 aaKnown RBP eCLIP14.51□□□□□ -0.091e-8■■■□□ 15.5
SHMT2-201ENST00000328923 GGT6Q6P531 493 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 CNKSR2Q8WXI2 1034 aa14.51□□□□□ -0.09
SHMT2-201ENST00000328923 SPINK5Q9NQ38 1064 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-201ENST00000328923 RIMS1Q86UR5 1692 aaKnown RBP14.5□□□□□ -0.09
SHMT2-201ENST00000328923 TMED8Q6PL24 325 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-201ENST00000328923 EFCC1Q9HA90 598 aa14.49□□□□□ -0.09
SHMT2-201ENST00000328923 NPATQ14207 1427 aa14.49□□□□□ -0.09
SHMT2-201ENST00000328923 PIBF1Q8WXW3 757 aa14.49□□□□□ -0.09
SHMT2-201ENST00000328923 SIRT1Q96EB6 747 aa14.49□□□□□ -0.09
SHMT2-201ENST00000328923 TNNT3P45378 269 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-201ENST00000328923 ABCC3O15438 1527 aa14.48□□□□□ -0.09
SHMT2-201ENST00000328923 KDM5AP29375 1690 aaKnown RBP14.48□□□□□ -0.09
SHMT2-201ENST00000328923 APAF1O14727 1248 aa14.48□□□□□ -0.09
SHMT2-201ENST00000328923 RIOK3O14730 519 aaKnown RBP14.48□□□□□ -0.09
SHMT2-201ENST00000328923 BAG4O95429 457 aaKnown RBP14.48□□□□□ -0.09
SHMT2-201ENST00000328923 MROH2AA6NES4 1674 aa14.48□□□□□ -0.09
SHMT2-201ENST00000328923 ZC3H13Q5T200 1668 aaKnown RBP14.48□□□□□ -0.09
SHMT2-201ENST00000328923 TMX1Q9H3N1 280 aa14.47□□□□□ -0.09
SHMT2-201ENST00000328923 RBM27Q9P2N5 1060 aaKnown RBP14.47□□□□□ -0.09
SHMT2-201ENST00000328923 CTNNA3Q9UI47 895 aa14.47□□□□□ -0.09
SHMT2-201ENST00000328923 CFAP65Q6ZU64 1925 aaKnown RBP14.47□□□□□ -0.09
SHMT2-201ENST00000328923 HOMEZQ8IX15 550 aa14.47□□□□□ -0.09
SHMT2-201ENST00000328923 PDZRN3Q9UPQ7 1066 aa14.47□□□□□ -0.09
SHMT2-201ENST00000328923 IFT172Q9UG01 1749 aa14.47□□□□□ -0.09
SHMT2-201ENST00000328923 SCAF11Q99590 1463 aaKnown RBP14.47□□□□□ -0.09
SHMT2-201ENST00000328923 RNF214Q8ND24 703 aa14.46□□□□□ -0.09
SHMT2-201ENST00000328923 CAMSAP1Q5T5Y3 1602 aa14.46□□□□□ -0.09
SHMT2-201ENST00000328923 KIAA1210Q9ULL0 1709 aa14.46□□□□□ -0.09
SHMT2-201ENST00000328923 FKBP5Q13451 457 aaPredicted RBP14.46□□□□□ -0.1
SHMT2-201ENST00000328923 RSPH14Q9UHP6 348 aa14.46□□□□□ -0.1
SHMT2-201ENST00000328923 COG6Q9Y2V7 657 aa14.46□□□□□ -0.1
SHMT2-201ENST00000328923 MYOM2P54296 1465 aa14.46□□□□□ -0.1
SHMT2-201ENST00000328923 MCTP1Q6DN14 999 aa14.45□□□□□ -0.1
SHMT2-201ENST00000328923 DDX41Q9UJV9 622 aaKnown RBP14.45□□□□□ -0.1
SHMT2-201ENST00000328923 CCDC146Q8IYE0 955 aa14.45□□□□□ -0.1
SHMT2-201ENST00000328923 ADGRB3O60242 1522 aa14.44□□□□□ -0.1
SHMT2-201ENST00000328923 PANK1Q8TE04 598 aa14.44□□□□□ -0.1
SHMT2-201ENST00000328923 SNX21Q969T3 373 aa14.44□□□□□ -0.1
SHMT2-201ENST00000328923 RWDD1Q9H446 243 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-201ENST00000328923 TULP1O00294 542 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-201ENST00000328923 NOP2P46087 812 aaKnown RBP14.44□□□□□ -0.1
SHMT2-201ENST00000328923 GTF2A1P52655 376 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-201ENST00000328923 LMOD3Q0VAK6 560 aa14.43□□□□□ -0.1
SHMT2-201ENST00000328923 AK9Q5TCS8 1911 aa14.43□□□□□ -0.1
SHMT2-201ENST00000328923 CTIFO43310 598 aaKnown RBP14.43□□□□□ -0.1
SHMT2-201ENST00000328923 NCBP1Q09161 790 aaKnown RBP14.43□□□□□ -0.1
SHMT2-201ENST00000328923 RAD51AP2Q09MP3 1159 aa14.43□□□□□ -0.1
SHMT2-201ENST00000328923 CT47A1Q5JQC4 288 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-201ENST00000328923 BANK1Q8NDB2 785 aa14.43□□□□□ -0.1
SHMT2-201ENST00000328923 POLR3AO14802 1390 aaPredicted RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms