RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PRKD2Q9BZL6 878 aa6.44□□□□□ -1.38
HMGB1-201ENST00000326004 TFIP11Q9UBB9 837 aaKnown RBP6.44□□□□□ -1.38
HMGB1-201ENST00000326004 ESPNB1AK53 854 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 LZTS3O60299 673 aaPredicted RBP6.43□□□□□ -1.38
HMGB1-201ENST00000326004 SKIP12755 728 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 MAP7D1Q3KQU3 841 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 CFAP70Q5T0N1 1121 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 ZNF697Q5TEC3 545 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 TBC1D9Q6ZT07 1266 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 VASH1Q7L8A9 365 aaPredicted RBP6.43□□□□□ -1.38
HMGB1-201ENST00000326004 CHIC2Q9UKJ5 165 aa6.43□□□□□ -1.38
HMGB1-201ENST00000326004 MAFBQ9Y5Q3 323 aaPredicted RBP6.43□□□□□ -1.38
HMGB1-201ENST00000326004 PIK3CDO00329 1044 aa6.42□□□□□ -1.38
HMGB1-201ENST00000326004 SIAH2O43255 324 aa6.42□□□□□ -1.38
HMGB1-201ENST00000326004 GIGYF1O75420 1035 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-201ENST00000326004 LMOD1P29536 600 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-201ENST00000326004 PLEKHM2Q8IWE5 1019 aa6.42□□□□□ -1.38
HMGB1-201ENST00000326004 TRIM52Q96A61 297 aa6.42□□□□□ -1.38
HMGB1-201ENST00000326004 MRGPRX2Q96LB1 330 aa6.42□□□□□ -1.38
HMGB1-201ENST00000326004 KCTD15Q96SI1 283 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-201ENST00000326004 USP17L5A8MUK1 530 aa6.41□□□□□ -1.38
HMGB1-201ENST00000326004 RGS20O76081 388 aa6.41□□□□□ -1.38
HMGB1-201ENST00000326004 HOMEZQ8IX15 550 aa6.41□□□□□ -1.38
HMGB1-201ENST00000326004 PLPP7Q8NBV4 271 aa6.41□□□□□ -1.38
HMGB1-201ENST00000326004 PBXIP1Q96AQ6 731 aa6.41□□□□□ -1.38
HMGB1-201ENST00000326004 USP17L3A6NCW0 530 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 USP17L4A6NCW7 530 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 RFX1P22670 979 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 ARID5BQ14865 1188 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 USP17L2Q6R6M4 530 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 USP17L1Q7RTZ2 530 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 TLL2Q9Y6L7 1015 aa6.4□□□□□ -1.38
HMGB1-201ENST00000326004 ADH1CP00326 375 aa6.39□□□□□ -1.39
HMGB1-201ENST00000326004 DHX9Q08211 1270 aaKnown RBP6.39□□□□□ -1.39
HMGB1-201ENST00000326004 NR5A1Q13285 461 aa6.39□□□□□ -1.39
HMGB1-201ENST00000326004 EML3Q32P44 896 aa6.39□□□□□ -1.39
HMGB1-201ENST00000326004 INTS6LQ5JSJ4 861 aaKnown RBP6.39□□□□□ -1.39
HMGB1-201ENST00000326004 TRAF7Q6Q0C0 670 aa6.39□□□□□ -1.39
HMGB1-201ENST00000326004 CCDC85AQ96PX6 553 aaPredicted RBP6.39□□□□□ -1.39
HMGB1-201ENST00000326004 PKD2L1Q9P0L9 805 aa6.39□□□□□ -1.39
HMGB1-201ENST00000326004 DOLKQ9UPQ8 538 aa6.39□□□□□ -1.39
HMGB1-201ENST00000326004 FSHRP23945 695 aa6.38□□□□□ -1.39
HMGB1-201ENST00000326004 SRPK2P78362 688 aaKnown RBP6.38□□□□□ -1.39
HMGB1-201ENST00000326004 FOXC1Q12948 553 aa6.38□□□□□ -1.39
HMGB1-201ENST00000326004 SNIP1Q8TAD8 396 aaKnown RBP6.38□□□□□ -1.39
HMGB1-201ENST00000326004 SIRT1Q96EB6 747 aa6.38□□□□□ -1.39
HMGB1-201ENST00000326004 VRTNQ9H8Y1 702 aa6.38□□□□□ -1.39
HMGB1-201ENST00000326004 ACIN1Q9UKV3 1341 aaKnown RBP6.38□□□□□ -1.39
HMGB1-201ENST00000326004 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.37□□□□□ -1.39
HMGB1-201ENST00000326004 ATP5J2-PTCD1G3V325 749 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 GDF9O60383 454 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 GRM5P41594 1212 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 PRR20EP86478 221 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 PRR20CP86479 221 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 PRR20DP86480 221 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 PRR20BP86481 221 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 PRR20AP86496 221 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 NCOA4Q13772 614 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 NOD1Q9Y239 953 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 PCDHB11Q9Y5F2 797 aa6.37□□□□□ -1.39
HMGB1-201ENST00000326004 ERVH48-1M5A8F1 160 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 ATG7O95352 703 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 USP4Q13107 963 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 KANK4Q5T7N3 995 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-201ENST00000326004 TRIM50Q86XT4 487 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 CCDC116Q8IYX3 515 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 DEPDC4Q8N2C3 294 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 MKRN1Q9UHC7 482 aaKnown RBP6.36□□□□□ -1.39
HMGB1-201ENST00000326004 WASF2Q9Y6W5 498 aa6.36□□□□□ -1.39
HMGB1-201ENST00000326004 TTC24A2A3L6 582 aaPredicted RBP6.35□□□□□ -1.39
HMGB1-201ENST00000326004 ALDH1A1P00352 501 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 ATP1A2P50993 1020 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 RAB15P59190 212 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 TSGA10IPQ3SY00 556 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 OXLD1Q5BKU9 147 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 CYP4X1Q8N118 509 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 EMILIN1Q9Y6C2 1016 aa6.35□□□□□ -1.39
HMGB1-201ENST00000326004 FAM196BA6NMK8 535 aa6.34□□□□□ -1.39
HMGB1-201ENST00000326004 MYCP01106 439 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-201ENST00000326004 PDE4CQ08493 712 aa6.34□□□□□ -1.39
HMGB1-201ENST00000326004 NNTQ13423 1086 aa6.34□□□□□ -1.39
HMGB1-201ENST00000326004 CDCA7Q9BWT1 371 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-201ENST00000326004 TOR4AQ9NXH8 423 aa6.34□□□□□ -1.39
HMGB1-201ENST00000326004 PGPEP1Q9NXJ5 209 aa6.34□□□□□ -1.39
HMGB1-201ENST00000326004 TNFRSF10AO00220 468 aa6.33□□□□□ -1.4
HMGB1-201ENST00000326004 ERVK-9P63128 1117 aa6.33□□□□□ -1.4
HMGB1-201ENST00000326004 MYT1Q01538 1121 aa6.33□□□□□ -1.4
HMGB1-201ENST00000326004 ELOAQ14241 798 aaKnown RBP6.33□□□□□ -1.4
HMGB1-201ENST00000326004 PPP1R26Q5T8A7 1209 aaPredicted RBP6.33□□□□□ -1.4
HMGB1-201ENST00000326004 CC2D2BQ6DHV5 1058 aa6.33□□□□□ -1.4
HMGB1-201ENST00000326004 LARP1Q6PKG0 1096 aaKnown RBP6.33□□□□□ -1.4
HMGB1-201ENST00000326004 ESF1Q9H501 851 aaKnown RBP6.33□□□□□ -1.4
HMGB1-201ENST00000326004 NR3C2P08235 984 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 CSB-PGBD3P0DP91 1061 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 RASA1P20936 1047 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 GTF2IP78347 998 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 CDCA8Q53HL2 280 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 TRIM67Q6ZTA4 783 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 LARGE2Q8N3Y3 721 aa6.32□□□□□ -1.4
HMGB1-201ENST00000326004 USP17L15C9J2P7 530 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms