RNA–Protein interactions for RNA: ENST00000304778.11

LONRF3-201, Transcript of LON peptidase N-terminal domain and ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene LONRF3, Length 2,989 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3-201ENST00000304778 PNNQ9H307 717 aaKnown RBP20.51■□□□□ 0.87
LONRF3-201ENST00000304778 FCHSD2O94868 740 aa20.5■□□□□ 0.87
LONRF3-201ENST00000304778 ACEP12821 1306 aa20.5■□□□□ 0.87
LONRF3-201ENST00000304778 RIPK4P57078 832 aa20.49■□□□□ 0.87
LONRF3-201ENST00000304778 TNNQ9UQP3 1299 aa20.49■□□□□ 0.87
LONRF3-201ENST00000304778 AATKQ6ZMQ8 1374 aa20.49■□□□□ 0.87
LONRF3-201ENST00000304778 BCL2L13Q9BXK5 485 aa20.49■□□□□ 0.87
LONRF3-201ENST00000304778 PCDHB15Q9Y5E8 787 aa20.49■□□□□ 0.87
LONRF3-201ENST00000304778 RRS1Q15050 365 aaKnown RBP20.48■□□□□ 0.87
LONRF3-201ENST00000304778 PLEKHG3A1L390 1219 aa20.48■□□□□ 0.87
LONRF3-201ENST00000304778 TSR2Q969E8 191 aaKnown RBP20.48■□□□□ 0.87
LONRF3-201ENST00000304778 PRKAR2BP31323 418 aa20.47■□□□□ 0.87
LONRF3-201ENST00000304778 LRRC7Q96NW7 1537 aa20.47■□□□□ 0.87
LONRF3-201ENST00000304778 TOPAZ1Q8N9V7 1692 aa20.47■□□□□ 0.87
LONRF3-201ENST00000304778 HMOX1P09601 288 aa20.46■□□□□ 0.87
LONRF3-201ENST00000304778 IL13P35225 146 aa20.46■□□□□ 0.87
LONRF3-201ENST00000304778 TTC21BQ7Z4L5 1316 aa20.46■□□□□ 0.87
LONRF3-201ENST00000304778 PTCH1Q13635 1447 aa20.45■□□□□ 0.86
LONRF3-201ENST00000304778 CDK12Q9NYV4 1490 aaPredicted RBP20.45■□□□□ 0.86
LONRF3-201ENST00000304778 SPRYD3Q8NCJ5 442 aa20.45■□□□□ 0.86
LONRF3-201ENST00000304778 CT47B1P0C2W7 299 aaPredicted RBP20.45■□□□□ 0.86
LONRF3-201ENST00000304778 NAP1L5Q96NT1 182 aaPredicted RBP20.44■□□□□ 0.86
LONRF3-201ENST00000304778 DIP2AQ14689 1571 aa20.44■□□□□ 0.86
LONRF3-201ENST00000304778 CEP170BQ9Y4F5 1589 aaPredicted RBP20.43■□□□□ 0.86
LONRF3-201ENST00000304778 MVPQ14764 893 aaKnown RBP20.43■□□□□ 0.86
LONRF3-201ENST00000304778 RWDD1Q9H446 243 aaPredicted RBP20.43■□□□□ 0.86
LONRF3-201ENST00000304778 RIMS1Q86UR5 1692 aaKnown RBP20.43■□□□□ 0.86
LONRF3-201ENST00000304778 NRKQ7Z2Y5 1582 aa20.43■□□□□ 0.86
LONRF3-201ENST00000304778 PHACTR3Q96KR7 559 aa20.43■□□□□ 0.86
LONRF3-201ENST00000304778 PDZRN3Q9UPQ7 1066 aa20.43■□□□□ 0.86
LONRF3-201ENST00000304778 USP6P35125 1406 aa20.42■□□□□ 0.86
LONRF3-201ENST00000304778 IL16Q14005 1332 aa20.42■□□□□ 0.86
LONRF3-201ENST00000304778 EXOSC9Q06265 439 aaKnown RBP20.42■□□□□ 0.86
LONRF3-201ENST00000304778 HSP90AA2PQ14568 343 aaPredicted RBP20.42■□□□□ 0.86
LONRF3-201ENST00000304778 ZKSCAN2Q63HK3 967 aa20.42■□□□□ 0.86
LONRF3-201ENST00000304778 BECN1Q14457 450 aa20.4■□□□□ 0.86
LONRF3-201ENST00000304778 KCNA6P17658 529 aa20.4■□□□□ 0.86
LONRF3-201ENST00000304778 FTSJ3Q8IY81 847 aaKnown RBP20.39■□□□□ 0.85
LONRF3-201ENST00000304778 DZIP1LQ8IYY4 767 aaKnown RBP20.39■□□□□ 0.85
LONRF3-201ENST00000304778 XRN1Q8IZH2 1706 aaKnown RBP20.39■□□□□ 0.85
LONRF3-201ENST00000304778 NFE2L2Q16236 605 aa20.38■□□□□ 0.85
LONRF3-201ENST00000304778 OVOS2A0A0J9YW53 1432 aa20.38■□□□□ 0.85
LONRF3-201ENST00000304778 OVOS2Q6IE36 1432 aa20.38■□□□□ 0.85
LONRF3-201ENST00000304778 UPF2Q9HAU5 1272 aaKnown RBP20.38■□□□□ 0.85
LONRF3-201ENST00000304778 SSH2Q76I76 1423 aa20.37■□□□□ 0.85
LONRF3-201ENST00000304778 L1TD1Q5T7N2 865 aaKnown RBP20.37■□□□□ 0.85
LONRF3-201ENST00000304778 HSP90AA1P07900 732 aaKnown RBP20.36■□□□□ 0.85
LONRF3-201ENST00000304778 TBC1D32Q96NH3 1257 aa20.36■□□□□ 0.85
LONRF3-201ENST00000304778 SMC4Q9NTJ3 1288 aa20.36■□□□□ 0.85
LONRF3-201ENST00000304778 NGDNQ8NEJ9 315 aaKnown RBP20.35■□□□□ 0.85
LONRF3-201ENST00000304778 RGPD8O14715 1765 aaPredicted RBP20.35■□□□□ 0.85
LONRF3-201ENST00000304778 GZF1Q9H116 711 aaPredicted RBP20.35■□□□□ 0.85
LONRF3-201ENST00000304778 RRP9O43818 475 aaKnown RBP20.34■□□□□ 0.85
LONRF3-201ENST00000304778 TRIM27P14373 513 aa20.34■□□□□ 0.85
LONRF3-201ENST00000304778 ANKLE2Q86XL3 938 aa20.34■□□□□ 0.85
LONRF3-201ENST00000304778 THUMPD2Q9BTF0 503 aaKnown RBP20.34■□□□□ 0.85
LONRF3-201ENST00000304778 PIK3R4Q99570 1358 aa20.34■□□□□ 0.85
LONRF3-201ENST00000304778 SOX12O15370 315 aa20.34■□□□□ 0.85
LONRF3-201ENST00000304778 EIF4A2Q14240 407 aaKnown RBP20.34■□□□□ 0.85
LONRF3-201ENST00000304778 SSH1Q8WYL5 1049 aa20.33■□□□□ 0.85
LONRF3-201ENST00000304778 USP31Q70CQ4 1352 aa20.32■□□□□ 0.84
LONRF3-201ENST00000304778 TTC21AQ8NDW8 1320 aa20.32■□□□□ 0.84
LONRF3-201ENST00000304778 DDX19BQ9UMR2 479 aa20.32■□□□□ 0.84
LONRF3-201ENST00000304778 HDAC1Q13547 482 aaPredicted RBP20.31■□□□□ 0.84
LONRF3-201ENST00000304778 ATF7IPQ6VMQ6 1270 aa20.31■□□□□ 0.84
LONRF3-201ENST00000304778 NALCNQ8IZF0 1738 aa20.31■□□□□ 0.84
LONRF3-201ENST00000304778 HSP90AB2PQ58FF8 381 aa20.31■□□□□ 0.84
LONRF3-201ENST00000304778 ADAMTSL3P82987 1691 aa20.3■□□□□ 0.84
LONRF3-201ENST00000304778 AEBP1Q8IUX7 1158 aa20.3■□□□□ 0.84
LONRF3-201ENST00000304778 PEAK1Q9H792 1746 aa20.29■□□□□ 0.84
LONRF3-201ENST00000304778 SULT6B1Q6IMI4 303 aa20.29■□□□□ 0.84
LONRF3-201ENST00000304778 ITPRIPQ8IWB1 547 aa20.29■□□□□ 0.84
LONRF3-201ENST00000304778 PANK2Q9BZ23 570 aa20.29■□□□□ 0.84
LONRF3-201ENST00000304778 ANTXR1Q9H6X2 564 aa20.28■□□□□ 0.84
LONRF3-201ENST00000304778 ANKARQ7Z5J8 1434 aa20.28■□□□□ 0.84
LONRF3-201ENST00000304778 CLCN1P35523 988 aa20.28■□□□□ 0.84
LONRF3-201ENST00000304778 ZNF142P52746 1687 aaPredicted RBP20.28■□□□□ 0.84
LONRF3-201ENST00000304778 CALD1Q05682 793 aaKnown RBP20.28■□□□□ 0.84
LONRF3-201ENST00000304778 KIF16BQ96L93 1317 aa20.27■□□□□ 0.84
LONRF3-201ENST00000304778 NOB1Q9ULX3 412 aaKnown RBP20.27■□□□□ 0.84
LONRF3-201ENST00000304778 XRCC6P12956 609 aaKnown RBP eCLIP20.27■□□□□ 0.83
LONRF3-201ENST00000304778 RBM33Q96EV2 1170 aaKnown RBP20.27■□□□□ 0.83
LONRF3-201ENST00000304778 TBC1D2Q9BYX2 928 aa20.27■□□□□ 0.83
LONRF3-201ENST00000304778 FAM83GA6ND36 823 aa20.26■□□□□ 0.83
LONRF3-201ENST00000304778 MAP3K19Q56UN5 1328 aa20.26■□□□□ 0.83
LONRF3-201ENST00000304778 LMOD3Q0VAK6 560 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 IFT57Q9NWB7 429 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 FMN2Q9NZ56 1722 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 GNAI1P63096 354 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 DLG5Q8TDM6 1919 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 CHD2O14647 1828 aaKnown RBP20.25■□□□□ 0.83
LONRF3-201ENST00000304778 ZNF853P0CG23 659 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 SMC5Q8IY18 1101 aa20.25■□□□□ 0.83
LONRF3-201ENST00000304778 DCTN1Q14203 1278 aa20.24■□□□□ 0.83
LONRF3-201ENST00000304778 TMEM57Q8N5G2 664 aa20.24■□□□□ 0.83
LONRF3-201ENST00000304778 MBIPQ9NS73 344 aa20.24■□□□□ 0.83
LONRF3-201ENST00000304778 PIK3C2AO00443 1686 aa20.24■□□□□ 0.83
LONRF3-201ENST00000304778 ALDH1L2Q3SY69 923 aa20.23■□□□□ 0.83
LONRF3-201ENST00000304778 IPO8O15397 1037 aaKnown RBP20.23■□□□□ 0.83
LONRF3-201ENST00000304778 NLRP6P59044 892 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms