RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PEAK1Q9H792 1746 aa21.54■■□□□ 1.04
USP4-201ENST00000265560 PHF23Q9BUL5 403 aaPredicted RBP21.54■■□□□ 1.04
USP4-201ENST00000265560 BCL2L13Q9BXK5 485 aa21.54■■□□□ 1.04
USP4-201ENST00000265560 STRCQ7RTU9 1775 aa21.53■■□□□ 1.04
USP4-201ENST00000265560 NWD1Q149M9 1564 aa21.53■■□□□ 1.04
USP4-201ENST00000265560 NEFMP07197 916 aa21.53■■□□□ 1.04
USP4-201ENST00000265560 KRT28Q7Z3Y7 464 aa21.53■■□□□ 1.04
USP4-201ENST00000265560 FAM83GA6ND36 823 aa21.53■■□□□ 1.04
USP4-201ENST00000265560 DCTN1Q14203 1278 aa21.53■■□□□ 1.04
USP4-201ENST00000265560 PPP4R2Q9NY27 417 aa21.52■■□□□ 1.04
USP4-201ENST00000265560 C1orf167Q5SNV9 1468 aa21.51■■□□□ 1.03
USP4-201ENST00000265560 USHBP1Q8N6Y0 703 aa21.5■■□□□ 1.03
USP4-201ENST00000265560 WDR63Q8IWG1 891 aa21.49■■□□□ 1.03
USP4-201ENST00000265560 NGEFQ8N5V2 710 aa21.49■■□□□ 1.03
USP4-201ENST00000265560 HOXC9P31274 260 aa21.48■■□□□ 1.03
USP4-201ENST00000265560 CCDC27Q2M243 656 aa21.48■■□□□ 1.03
USP4-201ENST00000265560 CABLES1Q8TDN4 633 aa21.48■■□□□ 1.03
USP4-201ENST00000265560 PNNQ9H307 717 aaKnown RBP21.48■■□□□ 1.03
USP4-201ENST00000265560 EYA1Q99502 592 aa21.48■■□□□ 1.03
USP4-201ENST00000265560 NFE2L2Q16236 605 aa21.47■■□□□ 1.03
USP4-201ENST00000265560 FLT4P35916 1363 aa21.47■■□□□ 1.03
USP4-201ENST00000265560 CRBNQ96SW2 442 aa21.46■■□□□ 1.03
USP4-201ENST00000265560 ZC3H6P61129 1189 aaKnown RBP21.46■■□□□ 1.03
USP4-201ENST00000265560 FRAT1Q92837 279 aaPredicted RBP21.46■■□□□ 1.03
USP4-201ENST00000265560 SBNO1A3KN83 1393 aa21.45■■□□□ 1.03
USP4-201ENST00000265560 EXOSC9Q06265 439 aaKnown RBP21.45■■□□□ 1.02
USP4-201ENST00000265560 CADPS2Q86UW7 1296 aa21.45■■□□□ 1.02
USP4-201ENST00000265560 MST1RQ04912 1400 aa21.45■■□□□ 1.02
USP4-201ENST00000265560 GCP02774 474 aa21.45■■□□□ 1.02
USP4-201ENST00000265560 FANCIQ9NVI1 1328 aa21.45■■□□□ 1.02
USP4-201ENST00000265560 MSH6P52701 1360 aa21.45■■□□□ 1.02
USP4-201ENST00000265560 MARF1Q9Y4F3 1742 aaKnown RBP21.45■■□□□ 1.02
USP4-201ENST00000265560 CCDC136Q96JN2 1154 aa21.44■■□□□ 1.02
USP4-201ENST00000265560 ELL2O00472 640 aaPredicted RBP21.43■■□□□ 1.02
USP4-201ENST00000265560 MCM10Q7L590 875 aa21.42■■□□□ 1.02
USP4-201ENST00000265560 MYH16Q9H6N6 1097 aa21.42■■□□□ 1.02
USP4-201ENST00000265560 LRRC59Q96AG4 307 aaKnown RBP21.42■■□□□ 1.02
USP4-201ENST00000265560 TNNQ9UQP3 1299 aa21.42■■□□□ 1.02
USP4-201ENST00000265560 CANXP27824 592 aaKnown RBP21.4■■□□□ 1.02
USP4-201ENST00000265560 ERICH6BQ5W0A0 696 aa21.39■■□□□ 1.01
USP4-201ENST00000265560 TCERG1O14776 1098 aaKnown RBP21.39■■□□□ 1.01
USP4-201ENST00000265560 XIRP1Q702N8 1843 aaKnown RBP21.38■■□□□ 1.01
USP4-201ENST00000265560 RARSP54136 660 aaKnown RBP21.38■■□□□ 1.01
USP4-201ENST00000265560 AXIN2Q9Y2T1 843 aa21.38■■□□□ 1.01
USP4-201ENST00000265560 MTHFSDQ2M296 383 aaKnown RBP21.38■■□□□ 1.01
USP4-201ENST00000265560 BRINP3Q76B58 766 aa21.38■■□□□ 1.01
USP4-201ENST00000265560 CLUAP1Q96AJ1 413 aa21.38■■□□□ 1.01
USP4-201ENST00000265560 DLG5Q8TDM6 1919 aa21.38■■□□□ 1.01
USP4-201ENST00000265560 PANK1Q8TE04 598 aa21.37■■□□□ 1.01
USP4-201ENST00000265560 MIS18AQ9NYP9 233 aa21.37■■□□□ 1.01
USP4-201ENST00000265560 SLAIN2Q9P270 581 aa21.37■■□□□ 1.01
USP4-201ENST00000265560 NBPF6Q5VWK0 638 aa21.37■■□□□ 1.01
USP4-201ENST00000265560 NBPF4Q96M43 638 aa21.37■■□□□ 1.01
USP4-201ENST00000265560 IP6K1Q92551 441 aa21.36■■□□□ 1.01
USP4-201ENST00000265560 LTN1O94822 1766 aa21.36■■□□□ 1.01
USP4-201ENST00000265560 KCNH5Q8NCM2 988 aa21.36■■□□□ 1.01
USP4-201ENST00000265560 CHRNA2Q15822 529 aa21.35■■□□□ 1.01
USP4-201ENST00000265560 TSPYL6Q8N831 410 aa21.34■■□□□ 1.01
USP4-201ENST00000265560 IGSF1Q8N6C5 1336 aa21.34■■□□□ 1.01
USP4-201ENST00000265560 ARHGEF25Q86VW2 580 aa21.34■■□□□ 1.01
USP4-201ENST00000265560 KRT24Q2M2I5 525 aa21.33■■□□□ 1.01
USP4-201ENST00000265560 MBIPQ9NS73 344 aa21.33■■□□□ 1.01
USP4-201ENST00000265560 NPHP3Q7Z494 1330 aa21.33■■□□□ 1.01
USP4-201ENST00000265560 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.32■■□□□ 1
USP4-201ENST00000265560 NFAT5O94916 1531 aa21.32■■□□□ 1
USP4-201ENST00000265560 COG6Q9Y2V7 657 aa21.32■■□□□ 1
USP4-201ENST00000265560 PELP1Q8IZL8 1130 aaKnown RBP21.31■■□□□ 1
USP4-201ENST00000265560 SSH1Q8WYL5 1049 aa21.31■■□□□ 1
USP4-201ENST00000265560 SMC4Q9NTJ3 1288 aa21.31■■□□□ 1
USP4-201ENST00000265560 SKAP1Q86WV1 359 aa21.31■■□□□ 1
USP4-201ENST00000265560 ARHGEF10O15013 1369 aa21.3■■□□□ 1
USP4-201ENST00000265560 RGPD1P0DJD0 1748 aa21.3■■□□□ 1
USP4-201ENST00000265560 RLBP1P12271 317 aa21.3■■□□□ 1
USP4-201ENST00000265560 NCBP3Q53F19 620 aaKnown RBP21.3■■□□□ 1
USP4-201ENST00000265560 TRPM3Q9HCF6 1732 aaPredicted RBP21.3■■□□□ 1
USP4-201ENST00000265560 DCCP43146 1447 aa21.29■■□□□ 1
USP4-201ENST00000265560 ANKRD24Q8TF21 1146 aa21.29■■□□□ 1
USP4-201ENST00000265560 IL16Q14005 1332 aa21.29■■□□□ 1
USP4-201ENST00000265560 RGPD2P0DJD1 1756 aa21.28■■□□□ 1
USP4-201ENST00000265560 C8orf58Q8NAV2 365 aa21.28■■□□□ 1
USP4-201ENST00000265560 NCOA3Q9Y6Q9 1424 aa21.27■■□□□ 1
USP4-201ENST00000265560 KDRP35968 1356 aa21.27■■□□□ 1
USP4-201ENST00000265560 GNAI1P63096 354 aa21.27■□□□□ 0.99
USP4-201ENST00000265560 LMOD3Q0VAK6 560 aa21.27■□□□□ 0.99
USP4-201ENST00000265560 RTF1Q92541 710 aaKnown RBP21.27■□□□□ 0.99
USP4-201ENST00000265560 KIF1AQ12756 1690 aa21.26■□□□□ 0.99
USP4-201ENST00000265560 USP19O94966 1318 aa21.26■□□□□ 0.99
USP4-201ENST00000265560 CFAP44Q96MT7 982 aa21.26■□□□□ 0.99
USP4-201ENST00000265560 IFT57Q9NWB7 429 aa21.25■□□□□ 0.99
USP4-201ENST00000265560 SPATA31A3Q5VYP0 1347 aa21.25■□□□□ 0.99
USP4-201ENST00000265560 MED1Q15648 1581 aaPredicted RBP21.25■□□□□ 0.99
USP4-201ENST00000265560 ZNF853P0CG23 659 aa21.24■□□□□ 0.99
USP4-201ENST00000265560 RGPD5Q99666 1765 aa21.24■□□□□ 0.99
USP4-201ENST00000265560 TSHZ2Q9NRE2 1034 aa21.24■□□□□ 0.99
USP4-201ENST00000265560 HAP1P54257 671 aaPredicted RBP21.23■□□□□ 0.99
USP4-201ENST00000265560 NLRP2Q9NX02 1062 aa21.23■□□□□ 0.99
USP4-201ENST00000265560 NOB1Q9ULX3 412 aaKnown RBP21.23■□□□□ 0.99
USP4-201ENST00000265560 USP54Q70EL1 1684 aa21.23■□□□□ 0.99
USP4-201ENST00000265560 CALD1Q05682 793 aaKnown RBP21.22■□□□□ 0.99
USP4-201ENST00000265560 KIF24Q5T7B8 1368 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms