RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ALKQ9UM73 1620 aa26.72■■□□□ 1.87
TRIM28-201ENST00000253024 HSP90AB1P08238 724 aaKnown RBP26.71■■□□□ 1.87
TRIM28-201ENST00000253024 SLC26A8Q96RN1 970 aa26.71■■□□□ 1.87
TRIM28-201ENST00000253024 SMARCA5O60264 1052 aaPredicted RBP26.7■■□□□ 1.86
TRIM28-201ENST00000253024 OTUD7AQ8TE49 926 aaPredicted RBP26.7■■□□□ 1.86
TRIM28-201ENST00000253024 IL16Q14005 1332 aa26.7■■□□□ 1.86
TRIM28-201ENST00000253024 MCM4P33991 863 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 GNAI1P63096 354 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 ARHGEF40Q8TER5 1519 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 CFAP74Q9C0B2 1584 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 USP32Q8NFA0 1604 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 HSP90AB2PQ58FF8 381 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 NUTM2GQ5VZR2 741 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 TMEM131LA2VDJ0 1609 aa26.69■■□□□ 1.86
TRIM28-201ENST00000253024 RIMS2Q9UQ26 1411 aa26.68■■□□□ 1.86
TRIM28-201ENST00000253024 FOXO3O43524 673 aa26.68■■□□□ 1.86
TRIM28-201ENST00000253024 SLC4A10Q6U841 1118 aa26.67■■□□□ 1.86
TRIM28-201ENST00000253024 PNPLA6Q8IY17 1366 aa26.67■■□□□ 1.86
TRIM28-201ENST00000253024 ARHGAP31Q2M1Z3 1444 aa26.67■■□□□ 1.86
TRIM28-201ENST00000253024 ALDH1L2Q3SY69 923 aa26.67■■□□□ 1.86
TRIM28-201ENST00000253024 CEBPAP49715 358 aaPredicted RBP26.66■■□□□ 1.86
TRIM28-201ENST00000253024 TBC1D9Q6ZT07 1266 aa26.66■■□□□ 1.86
TRIM28-201ENST00000253024 CCDC61Q9Y6R9 512 aa26.65■■□□□ 1.86
TRIM28-201ENST00000253024 VIRMAQ69YN4 1812 aaKnown RBP26.65■■□□□ 1.86
TRIM28-201ENST00000253024 FAM135BQ49AJ0 1406 aa26.65■■□□□ 1.86
TRIM28-201ENST00000253024 PREX1Q8TCU6 1659 aa26.65■■□□□ 1.86
TRIM28-201ENST00000253024 PRR36Q9H6K5 1346 aa26.64■■□□□ 1.85
TRIM28-201ENST00000253024 CHMP5Q9NZZ3 219 aa26.64■■□□□ 1.85
TRIM28-201ENST00000253024 TRAK2O60296 914 aa26.63■■□□□ 1.85
TRIM28-201ENST00000253024 ZFYVE9O95405 1425 aa26.62■■□□□ 1.85
TRIM28-201ENST00000253024 F6X3S4 739 aa26.62■■□□□ 1.85
TRIM28-201ENST00000253024 EIF4A2Q14240 407 aaKnown RBP26.61■■□□□ 1.85
TRIM28-201ENST00000253024 IFT57Q9NWB7 429 aa26.61■■□□□ 1.85
TRIM28-201ENST00000253024 TSHZ3Q63HK5 1081 aa26.61■■□□□ 1.85
TRIM28-201ENST00000253024 CFAP44Q96MT7 982 aa26.61■■□□□ 1.85
TRIM28-201ENST00000253024 RICTORQ6R327 1708 aa26.6■■□□□ 1.85
TRIM28-201ENST00000253024 MAP2P11137 1827 aaKnown RBP26.6■■□□□ 1.85
TRIM28-201ENST00000253024 LTV1Q96GA3 475 aaPredicted RBP26.58■■□□□ 1.85
TRIM28-201ENST00000253024 CPS1P31327 1500 aa26.58■■□□□ 1.85
TRIM28-201ENST00000253024 A2ML1A8K2U0 1454 aa26.57■■□□□ 1.84
TRIM28-201ENST00000253024 GSPT1P15170 499 aaKnown RBP26.57■■□□□ 1.84
TRIM28-201ENST00000253024 XRCC6P12956 609 aaKnown RBP eCLIP26.57■■□□□ 1.843e-9■□□□□ 11
TRIM28-201ENST00000253024 MEIS3Q99687 375 aa26.57■■□□□ 1.84
TRIM28-201ENST00000253024 GOLGA6L3A6NEY3 463 aa26.56■■□□□ 1.84
TRIM28-201ENST00000253024 RBM33Q96EV2 1170 aaKnown RBP26.56■■□□□ 1.84
TRIM28-201ENST00000253024 ACEP12821 1306 aa26.55■■□□□ 1.84
TRIM28-201ENST00000253024 TNPO1Q92973 898 aaKnown RBP26.55■■□□□ 1.84
TRIM28-201ENST00000253024 ZBTB7CA1YPR0 619 aa26.55■■□□□ 1.84
TRIM28-201ENST00000253024 SLC4A2P04920 1241 aa26.55■■□□□ 1.84
TRIM28-201ENST00000253024 CALD1Q05682 793 aaKnown RBP26.55■■□□□ 1.84
TRIM28-201ENST00000253024 BMP2KLQ5H9B9 411 aa26.55■■□□□ 1.84
TRIM28-201ENST00000253024 KIF2CQ99661 725 aa26.55■■□□□ 1.84
TRIM28-201ENST00000253024 ZNF853P0CG23 659 aa26.54■■□□□ 1.84
TRIM28-201ENST00000253024 G2E3Q7L622 706 aa26.54■■□□□ 1.84
TRIM28-201ENST00000253024 FOXD4L5Q5VV16 416 aaPredicted RBP26.53■■□□□ 1.84
TRIM28-201ENST00000253024 C14orf37Q86TY3 774 aa26.53■■□□□ 1.84
TRIM28-201ENST00000253024 FOXD4L4Q8WXT5 416 aaPredicted RBP26.53■■□□□ 1.84
TRIM28-201ENST00000253024 NCBP3Q53F19 620 aaKnown RBP26.53■■□□□ 1.84
TRIM28-201ENST00000253024 GCC1Q96CN9 775 aa26.53■■□□□ 1.84
TRIM28-201ENST00000253024 RRAGDQ9NQL2 400 aaPredicted RBP26.52■■□□□ 1.84
TRIM28-201ENST00000253024 GAS2L2Q8NHY3 880 aa26.51■■□□□ 1.83
TRIM28-201ENST00000253024 CHAMP1Q96JM3 812 aa26.51■■□□□ 1.83
TRIM28-201ENST00000253024 API5Q9BZZ5 524 aaKnown RBP26.51■■□□□ 1.83
TRIM28-201ENST00000253024 ABCC4O15439 1325 aa26.5■■□□□ 1.83
TRIM28-201ENST00000253024 ZNF428Q96B54 188 aa26.5■■□□□ 1.83
TRIM28-201ENST00000253024 ZNF692Q9BU19 519 aaPredicted RBP26.5■■□□□ 1.83
TRIM28-201ENST00000253024 SSFA2P28290 1259 aa26.5■■□□□ 1.83
TRIM28-201ENST00000253024 NOL8Q76FK4 1167 aaKnown RBP26.5■■□□□ 1.83
TRIM28-201ENST00000253024 PLEKHM2Q8IWE5 1019 aa26.5■■□□□ 1.83
TRIM28-201ENST00000253024 CLTCQ00610 1675 aaKnown RBP26.49■■□□□ 1.83
TRIM28-201ENST00000253024 MED14O60244 1454 aa26.49■■□□□ 1.83
TRIM28-201ENST00000253024 ROBO2Q9HCK4 1378 aa26.49■■□□□ 1.83
TRIM28-201ENST00000253024 LTKP29376 864 aa26.49■■□□□ 1.83
TRIM28-201ENST00000253024 RBM25P49756 843 aaKnown RBP26.49■■□□□ 1.83
TRIM28-201ENST00000253024 EDC4Q6P2E9 1401 aaKnown RBP26.49■■□□□ 1.83
TRIM28-201ENST00000253024 LMOD3Q0VAK6 560 aa26.48■■□□□ 1.83
TRIM28-201ENST00000253024 TTC21BQ7Z4L5 1316 aa26.48■■□□□ 1.83
TRIM28-201ENST00000253024 ZMYM3Q14202 1370 aa26.48■■□□□ 1.83
TRIM28-201ENST00000253024 TPRNQ4KMQ1 711 aa26.46■■□□□ 1.83
TRIM28-201ENST00000253024 EXOC6BQ9Y2D4 811 aa26.46■■□□□ 1.83
TRIM28-201ENST00000253024 TSPYL4Q9UJ04 414 aa26.46■■□□□ 1.83
TRIM28-201ENST00000253024 MSH6P52701 1360 aa26.46■■□□□ 1.83
TRIM28-201ENST00000253024 NCLP19338 710 aaKnown RBP26.45■■□□□ 1.82
TRIM28-201ENST00000253024 NGDNQ8NEJ9 315 aaKnown RBP26.45■■□□□ 1.82
TRIM28-201ENST00000253024 KIF20BQ96Q89 1820 aa26.45■■□□□ 1.82
TRIM28-201ENST00000253024 CDC45O75419 566 aa26.45■■□□□ 1.82
TRIM28-201ENST00000253024 CPSF1Q10570 1443 aaKnown RBP26.45■■□□□ 1.82
TRIM28-201ENST00000253024 ARHGAP45Q92619 1136 aa26.44■■□□□ 1.82
TRIM28-201ENST00000253024 PKP1Q13835 747 aa26.43■■□□□ 1.82
TRIM28-201ENST00000253024 MTHFSDQ2M296 383 aaKnown RBP26.43■■□□□ 1.82
TRIM28-201ENST00000253024 USHBP1Q8N6Y0 703 aa26.43■■□□□ 1.82
TRIM28-201ENST00000253024 AMPHP49418 695 aa26.43■■□□□ 1.82
TRIM28-201ENST00000253024 L1TD1Q5T7N2 865 aaKnown RBP26.43■■□□□ 1.82
TRIM28-201ENST00000253024 ATP7BP35670 1465 aa26.42■■□□□ 1.82
TRIM28-201ENST00000253024 RTF1Q92541 710 aaKnown RBP26.42■■□□□ 1.82
TRIM28-201ENST00000253024 K7ELQ4 463 aaPredicted RBP26.42■■□□□ 1.82
TRIM28-201ENST00000253024 CEP85Q6P2H3 762 aa26.42■■□□□ 1.82
TRIM28-201ENST00000253024 MAP3K19Q56UN5 1328 aa26.41■■□□□ 1.82
TRIM28-201ENST00000253024 SDSP20132 328 aa26.4■■□□□ 1.82
TRIM28-201ENST00000253024 FOXD4L6Q3SYB3 417 aaPredicted RBP26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms