RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 PRKAR2BP31323 418 aa23.77■■□□□ 1.4
VIM-201ENST00000224237 TMPOP42166 694 aaKnown RBP23.77■■□□□ 1.4
VIM-201ENST00000224237 EIF4A2Q14240 407 aaKnown RBP23.77■■□□□ 1.4
VIM-201ENST00000224237 HSP90AB2PQ58FF8 381 aa23.76■■□□□ 1.39
VIM-201ENST00000224237 RGPD1P0DJD0 1748 aa23.75■■□□□ 1.39
VIM-201ENST00000224237 PLEKHG5O94827 1062 aa23.75■■□□□ 1.39
VIM-201ENST00000224237 HMOX1P09601 288 aa23.75■■□□□ 1.39
VIM-201ENST00000224237 IRX6P78412 446 aaPredicted RBP23.75■■□□□ 1.39
VIM-201ENST00000224237 SPINK5Q9NQ38 1064 aaPredicted RBP23.75■■□□□ 1.39
VIM-201ENST00000224237 AMPHP49418 695 aa23.74■■□□□ 1.39
VIM-201ENST00000224237 LMOD2Q6P5Q4 547 aa23.74■■□□□ 1.39
VIM-201ENST00000224237 NFAT5O94916 1531 aa23.72■■□□□ 1.39
VIM-201ENST00000224237 RTL1A6NKG5 1358 aa23.72■■□□□ 1.39
VIM-201ENST00000224237 BRINP3Q76B58 766 aa23.72■■□□□ 1.39
VIM-201ENST00000224237 KCNH5Q8NCM2 988 aa23.72■■□□□ 1.39
VIM-201ENST00000224237 LTN1O94822 1766 aa23.71■■□□□ 1.39
VIM-201ENST00000224237 ALS2Q96Q42 1657 aa23.71■■□□□ 1.39
VIM-201ENST00000224237 RRP1P56182 461 aaKnown RBP23.7■■□□□ 1.39
VIM-201ENST00000224237 SLIT3O75094 1523 aa23.7■■□□□ 1.38
VIM-201ENST00000224237 RIPK4P57078 832 aa23.7■■□□□ 1.38
VIM-201ENST00000224237 PELP1Q8IZL8 1130 aaKnown RBP23.7■■□□□ 1.38
VIM-201ENST00000224237 ARHGEF10O15013 1369 aa23.7■■□□□ 1.38
VIM-201ENST00000224237 NPHP3Q7Z494 1330 aa23.69■■□□□ 1.38
VIM-201ENST00000224237 SLAIN2Q9P270 581 aa23.69■■□□□ 1.38
VIM-201ENST00000224237 HOXC9P31274 260 aa23.68■■□□□ 1.38
VIM-201ENST00000224237 TRIM35Q9UPQ4 493 aa23.68■■□□□ 1.38
VIM-201ENST00000224237 PXDNQ92626 1479 aa23.68■■□□□ 1.38
VIM-201ENST00000224237 PHRF1Q9P1Y6 1649 aaKnown RBP23.68■■□□□ 1.38
VIM-201ENST00000224237 NFE2L2Q16236 605 aa23.68■■□□□ 1.38
VIM-201ENST00000224237 SULT6B1Q6IMI4 303 aa23.66■■□□□ 1.38
VIM-201ENST00000224237 PHACTR3Q96KR7 559 aa23.66■■□□□ 1.38
VIM-201ENST00000224237 MYH16Q9H6N6 1097 aa23.66■■□□□ 1.38
VIM-201ENST00000224237 USP19O94966 1318 aa23.66■■□□□ 1.38
VIM-201ENST00000224237 AEBP1Q8IUX7 1158 aa23.66■■□□□ 1.38
VIM-201ENST00000224237 IL16Q14005 1332 aa23.65■■□□□ 1.38
VIM-201ENST00000224237 LTBP4Q8N2S1 1624 aa23.64■■□□□ 1.38
VIM-201ENST00000224237 MED1Q15648 1581 aaPredicted RBP23.64■■□□□ 1.37
VIM-201ENST00000224237 ZBTB7CA1YPR0 619 aa23.64■■□□□ 1.37
VIM-201ENST00000224237 GCP02774 474 aa23.64■■□□□ 1.37
VIM-201ENST00000224237 TNS3Q68CZ2 1445 aa23.63■■□□□ 1.37
VIM-201ENST00000224237 IGSF1Q8N6C5 1336 aa23.63■■□□□ 1.37
VIM-201ENST00000224237 KDRP35968 1356 aa23.63■■□□□ 1.37
VIM-201ENST00000224237 IP6K1Q92551 441 aa23.62■■□□□ 1.37
VIM-201ENST00000224237 LMOD3Q0VAK6 560 aa23.61■■□□□ 1.37
VIM-201ENST00000224237 DLG5Q8TDM6 1919 aa23.6■■□□□ 1.37
VIM-201ENST00000224237 LTV1Q96GA3 475 aaPredicted RBP23.6■■□□□ 1.37
VIM-201ENST00000224237 EYA1Q99502 592 aa23.6■■□□□ 1.37
VIM-201ENST00000224237 PPP4R2Q9NY27 417 aa23.6■■□□□ 1.37
VIM-201ENST00000224237 SPATA31A3Q5VYP0 1347 aa23.6■■□□□ 1.37
VIM-201ENST00000224237 CALD1Q05682 793 aaKnown RBP23.58■■□□□ 1.37
VIM-201ENST00000224237 ARHGEF25Q86VW2 580 aa23.58■■□□□ 1.36
VIM-201ENST00000224237 CABLES1Q8TDN4 633 aa23.58■■□□□ 1.36
VIM-201ENST00000224237 FANCIQ9NVI1 1328 aa23.56■■□□□ 1.36
VIM-201ENST00000224237 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.56■■□□□ 1.36
VIM-201ENST00000224237 SOS2Q07890 1332 aaPredicted RBP23.55■■□□□ 1.36
VIM-201ENST00000224237 CRYBG1Q9Y4K1 1723 aa23.54■■□□□ 1.36
VIM-201ENST00000224237 ZC3H6P61129 1189 aaKnown RBP23.54■■□□□ 1.36
VIM-201ENST00000224237 CT47B1P0C2W7 299 aaPredicted RBP23.53■■□□□ 1.36
VIM-201ENST00000224237 NHSL1Q5SYE7 1610 aa23.53■■□□□ 1.36
VIM-201ENST00000224237 TSR2Q969E8 191 aaKnown RBP23.52■■□□□ 1.36
VIM-201ENST00000224237 PLIN1O60240 522 aa23.51■■□□□ 1.35
VIM-201ENST00000224237 USHBP1Q8N6Y0 703 aa23.51■■□□□ 1.35
VIM-201ENST00000224237 AXIN2Q9Y2T1 843 aa23.5■■□□□ 1.35
VIM-201ENST00000224237 RGPD2P0DJD1 1756 aa23.5■■□□□ 1.35
VIM-201ENST00000224237 THUMPD2Q9BTF0 503 aaKnown RBP23.49■■□□□ 1.35
VIM-201ENST00000224237 IFT57Q9NWB7 429 aa23.49■■□□□ 1.35
VIM-201ENST00000224237 RGPD5Q99666 1765 aa23.49■■□□□ 1.35
VIM-201ENST00000224237 ROBO1Q9Y6N7 1651 aa23.49■■□□□ 1.35
VIM-201ENST00000224237 GAS2L2Q8NHY3 880 aa23.49■■□□□ 1.35
VIM-201ENST00000224237 GNAI1P63096 354 aa23.48■■□□□ 1.35
VIM-201ENST00000224237 LRRC59Q96AG4 307 aaKnown RBP23.48■■□□□ 1.35
VIM-201ENST00000224237 BCAR3O75815 825 aa23.47■■□□□ 1.35
VIM-201ENST00000224237 RARSP54136 660 aaKnown RBP23.47■■□□□ 1.35
VIM-201ENST00000224237 NBPF6Q5VWK0 638 aa23.47■■□□□ 1.35
VIM-201ENST00000224237 NBPF4Q96M43 638 aa23.47■■□□□ 1.35
VIM-201ENST00000224237 ABCC6O95255 1503 aa23.47■■□□□ 1.35
VIM-201ENST00000224237 EXOSC9Q06265 439 aaKnown RBP23.47■■□□□ 1.35
VIM-201ENST00000224237 FAM83GA6ND36 823 aa23.46■■□□□ 1.35
VIM-201ENST00000224237 MTHFSDQ2M296 383 aaKnown RBP23.46■■□□□ 1.35
VIM-201ENST00000224237 ZNF853P0CG23 659 aa23.45■■□□□ 1.35
VIM-201ENST00000224237 CFAP44Q96MT7 982 aa23.45■■□□□ 1.35
VIM-201ENST00000224237 CAMTA1Q9Y6Y1 1673 aa23.45■■□□□ 1.34
VIM-201ENST00000224237 EXOC6Q8TAG9 804 aa23.45■■□□□ 1.34
VIM-201ENST00000224237 ANKRD24Q8TF21 1146 aa23.45■■□□□ 1.34
VIM-201ENST00000224237 NCAPD2Q15021 1401 aa23.44■■□□□ 1.34
VIM-201ENST00000224237 DCTN1Q14203 1278 aa23.44■■□□□ 1.34
VIM-201ENST00000224237 CHRNA2Q15822 529 aa23.44■■□□□ 1.34
VIM-201ENST00000224237 LAS1LQ9Y4W2 734 aaKnown RBP23.44■■□□□ 1.34
VIM-201ENST00000224237 KIAA0232Q92628 1395 aa23.44■■□□□ 1.34
VIM-201ENST00000224237 COL18A1P39060 1754 aa23.44■■□□□ 1.34
VIM-201ENST00000224237 ABCA3Q99758 1704 aa23.43■■□□□ 1.34
VIM-201ENST00000224237 B4GALNT3Q6L9W6 998 aa23.43■■□□□ 1.34
VIM-201ENST00000224237 RTF1Q92541 710 aaKnown RBP23.42■■□□□ 1.34
VIM-201ENST00000224237 CPDO75976 1380 aa23.42■■□□□ 1.34
VIM-201ENST00000224237 C20orf194Q5TEA3 1177 aa23.41■■□□□ 1.34
VIM-201ENST00000224237 ERBB3P21860 1342 aa23.41■■□□□ 1.34
VIM-201ENST00000224237 HTATSF1O43719 755 aaKnown RBP23.41■■□□□ 1.34
VIM-201ENST00000224237 AEBP2Q6ZN18 517 aaPredicted RBP23.41■■□□□ 1.34
VIM-201ENST00000224237 CRBNQ96SW2 442 aa23.41■■□□□ 1.34
VIM-201ENST00000224237 MBIPQ9NS73 344 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms