RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	SLP1	Q12232	587 aa		7.79	□□□□□ -1.16
TFB4	YPR056W	FIR1	P40020	876 aa		7.78	□□□□□ -1.16
TFB4	YPR056W	YIL165C	P40446	119 aa		7.78	□□□□□ -1.16
TFB4	YPR056W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	7.77	□□□□□ -1.17	not detected
TFB4	YPR056W	KRI1	P42846	591 aa	Known RBP	7.76	□□□□□ -1.17
TFB4	YPR056W	FUR4	P05316	633 aa	Known RBP	7.75	□□□□□ -1.17
TFB4	YPR056W	TOM20	P35180	183 aa		7.75	□□□□□ -1.17
TFB4	YPR056W	BOI1	P38041	980 aa	Known RBP	7.75	□□□□□ -1.17
TFB4	YPR056W	IPL1	P38991	367 aa		7.74	□□□□□ -1.17
TFB4	YPR056W	SLN1	P39928	1220 aa	Predicted RBP	7.74	□□□□□ -1.17
TFB4	YPR056W	MRP10	O75012	95 aa		7.73	□□□□□ -1.17
TFB4	YPR056W	KTR2	P33550	425 aa		7.73	□□□□□ -1.17
TFB4	YPR056W	TAT1	P38085	619 aa		7.73	□□□□□ -1.17
TFB4	YPR056W	NTA1	P40354	457 aa		7.73	□□□□□ -1.17
TFB4	YPR056W	BUD9	P53226	547 aa		7.73	□□□□□ -1.17
TFB4	YPR056W	RNH70	P53331	553 aa		7.73	□□□□□ -1.17
TFB4	YPR056W	SMC1	P32908	1225 aa		7.72	□□□□□ -1.17
TFB4	YPR056W	PPT1	P53043	513 aa		7.72	□□□□□ -1.17
TFB4	YPR056W	EMG1	Q06287	252 aa	Known RBP	7.72	□□□□□ -1.17
TFB4	YPR056W	AIM46	P38885	310 aa		7.71	□□□□□ -1.18
TFB4	YPR056W	BOL3	P39724	118 aa		7.71	□□□□□ -1.18
TFB4	YPR056W	RGD2	P43556	714 aa		7.71	□□□□□ -1.18
TFB4	YPR056W	RRP14	P36080	434 aa	Known RBP	7.7	□□□□□ -1.18
TFB4	YPR056W	STM1	P39015	273 aa	Known RBP	7.7	□□□□□ -1.18
TFB4	YPR056W	ZDS1	P50111	915 aa	Known RBP	7.7	□□□□□ -1.18
TFB4	YPR056W	TSR4	P25040	408 aa		7.69	□□□□□ -1.18
TFB4	YPR056W	SEC20	P28791	383 aa		7.69	□□□□□ -1.18
TFB4	YPR056W	AMN1	P38285	549 aa	Predicted RBP	7.69	□□□□□ -1.18
TFB4	YPR056W	PRY1	P47032	299 aa		7.69	□□□□□ -1.18
TFB4	YPR056W	SUT1	P53032	299 aa	Known RBP	7.69	□□□□□ -1.18
TFB4	YPR056W	AI3	P03877	415 aa		7.68	□□□□□ -1.18
TFB4	YPR056W	SFA1	P32771	386 aa		7.68	□□□□□ -1.18
TFB4	YPR056W	LEM3	P42838	414 aa		7.68	□□□□□ -1.18
TFB4	YPR056W	YFR016C	P43597	1233 aa	Known RBP	7.68	□□□□□ -1.18
TFB4	YPR056W	RPB10	P22139	70 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	PPG1	P32838	368 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	IRS4	P36115	615 aa	Known RBP	7.67	□□□□□ -1.18
TFB4	YPR056W	RRM3	P38766	723 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	FPR3	P38911	411 aa	Known RBP	7.67	□□□□□ -1.18
TFB4	YPR056W	RAD55	P38953	406 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	INP51	P40559	946 aa	Known RBP	7.67	□□□□□ -1.18
TFB4	YPR056W	LSB6	P42951	607 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	GUP1	P53154	560 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	SVF1	Q05515	481 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	YOL098C	Q12496	1037 aa		7.67	□□□□□ -1.18
TFB4	YPR056W	TY4B-P	A0A0B7P3V8	1104 aa		7.66	□□□□□ -1.18
TFB4	YPR056W	GIP2	P40036	548 aa		7.66	□□□□□ -1.18
TFB4	YPR056W	BIO5	P53744	561 aa	Known RBP	7.66	□□□□□ -1.18
TFB4	YPR056W	YPL034W	Q03083	165 aa		7.66	□□□□□ -1.18
TFB4	YPR056W	MCA1	Q08601	432 aa		7.66	□□□□□ -1.18
TFB4	YPR056W	SOG2	Q08817	791 aa		7.66	□□□□□ -1.18
TFB4	YPR056W	TY4A-H	Q6Q5P6	413 aa		7.66	□□□□□ -1.18
TFB4	YPR056W	SAC7	P17121	654 aa		7.65	□□□□□ -1.18
TFB4	YPR056W	YJL181W	P46987	611 aa		7.65	□□□□□ -1.18
TFB4	YPR056W	KAR5	Q04746	504 aa		7.65	□□□□□ -1.18
TFB4	YPR056W	FUS1	P11710	512 aa		7.64	□□□□□ -1.19
TFB4	YPR056W	PSY2	P40164	858 aa		7.64	□□□□□ -1.19
TFB4	YPR056W	ATG1	P53104	897 aa		7.64	□□□□□ -1.19
TFB4	YPR056W	ARI1	P53111	347 aa	Known RBP	7.64	□□□□□ -1.19
TFB4	YPR056W	SOK2	P53438	785 aa	Predicted RBP	7.64	□□□□□ -1.19
TFB4	YPR056W	RRP15	Q06511	250 aa	Predicted RBP	7.64	□□□□□ -1.19
TFB4	YPR056W	TIF6	Q12522	245 aa	Known RBP	7.64	□□□□□ -1.19
TFB4	YPR056W	SBP1	P10080	294 aa	Known RBP	7.63	□□□□□ -1.19
TFB4	YPR056W	PMC1	P38929	1173 aa	Predicted RBP	7.62	□□□□□ -1.19
TFB4	YPR056W	TPM2	P40414	161 aa		7.62	□□□□□ -1.19
TFB4	YPR056W	ACF4	P47129	309 aa		7.62	□□□□□ -1.19
TFB4	YPR056W	DSE4	P53753	1117 aa		7.62	□□□□□ -1.19
TFB4	YPR056W	ALD3	P54114	506 aa		7.62	□□□□□ -1.19
TFB4	YPR056W	UFD2	P54860	961 aa		7.62	□□□□□ -1.19
TFB4	YPR056W	YBL113C	Q7M4S9	792 aa		7.62	□□□□□ -1.19
TFB4	YPR056W	PGM1	P33401	570 aa	Known RBP	7.61	□□□□□ -1.19
TFB4	YPR056W	TED1	P40533	473 aa		7.61	□□□□□ -1.19
TFB4	YPR056W	POL32	P47110	350 aa		7.61	□□□□□ -1.19
TFB4	YPR056W	KIP3	P53086	805 aa	Known RBP	7.61	□□□□□ -1.19
TFB4	YPR056W	SSB1	P11484	613 aa	Known RBP	7.6	□□□□□ -1.19
TFB4	YPR056W	GLO3	P38682	493 aa	Known RBP	7.6	□□□□□ -1.19
TFB4	YPR056W	SSB2	P40150	613 aa	Known RBP	7.6	□□□□□ -1.19
TFB4	YPR056W	QDR1	P40475	563 aa		7.6	□□□□□ -1.19
TFB4	YPR056W	MSC6	Q08818	692 aa	Known RBP	7.6	□□□□□ -1.19
TFB4	YPR056W	ATE1	P16639	503 aa		7.59	□□□□□ -1.19
TFB4	YPR056W	RSC6	P25632	483 aa		7.59	□□□□□ -1.19
TFB4	YPR056W	TFA2	P36145	328 aa		7.59	□□□□□ -1.19
TFB4	YPR056W	GAS5	Q08193	484 aa		7.59	□□□□□ -1.19
TFB4	YPR056W	TOA1	P32773	286 aa		7.58	□□□□□ -1.2
TFB4	YPR056W	PAN5	P38787	379 aa		7.58	□□□□□ -1.2
TFB4	YPR056W	TY4A-J	P47023	414 aa		7.58	□□□□□ -1.2
TFB4	YPR056W	RSC4	Q02206	625 aa		7.58	□□□□□ -1.2
TFB4	YPR056W	JIP5	Q06214	492 aa	Predicted RBP	7.58	□□□□□ -1.2
TFB4	YPR056W	TY1A-NL1	Q12391	440 aa	Known RBP	7.58	□□□□□ -1.2
TFB4	YPR056W	HVG1	P0CE11	249 aa		7.57	□□□□□ -1.2
TFB4	YPR056W	GAL11	P19659	1081 aa		7.57	□□□□□ -1.2
TFB4	YPR056W	AIM21	P40563	679 aa		7.57	□□□□□ -1.2
TFB4	YPR056W	ALG12	P53730	551 aa		7.57	□□□□□ -1.2
TFB4	YPR056W	BRE1	Q07457	700 aa	Known RBP	7.57	□□□□□ -1.2
TFB4	YPR056W	YOL057W	Q08225	711 aa		7.57	□□□□□ -1.2
TFB4	YPR056W	SRP40	P32583	406 aa	Predicted RBP	7.56	□□□□□ -1.2
TFB4	YPR056W	ERP5	P38819	212 aa		7.56	□□□□□ -1.2
TFB4	YPR056W	RPS0B	P46654	252 aa	Known RBP	7.56	□□□□□ -1.2
TFB4	YPR056W	OYE2	Q03558	400 aa	Known RBP	7.56	□□□□□ -1.2
TFB4	YPR056W	SPO71	Q03868	1245 aa		7.56	□□□□□ -1.2

Retrieved 100 of 5,963 RNA–protein pairs in 69.9 ms