RNA–Protein interactions for RNA: YOR204W

DED1, Transcript of ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, yeast

Gene DED1, Length 1,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DED1	YOR204W	OPY1	P38271	328 aa		13.6	□□□□□ -0.23
DED1	YOR204W	RRP8	P38961	392 aa	Known RBP	13.6	□□□□□ -0.23
DED1	YOR204W	SLN1	P39928	1220 aa	Predicted RBP	13.6	□□□□□ -0.23
DED1	YOR204W	CBP1	P07252	654 aa		13.58	□□□□□ -0.24
DED1	YOR204W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	13.58	□□□□□ -0.24	not detected
DED1	YOR204W	KEL3	Q08979	651 aa	Predicted RBP	13.58	□□□□□ -0.24
DED1	YOR204W	VID28	P40547	921 aa		13.57	□□□□□ -0.24
DED1	YOR204W	EMP47	P43555	445 aa		13.57	□□□□□ -0.24
DED1	YOR204W	PTK2	P47116	818 aa	Known RBP	13.57	□□□□□ -0.24
DED1	YOR204W	UFD2	P54860	961 aa		13.57	□□□□□ -0.24
DED1	YOR204W	RPS15	Q01855	142 aa	Known RBP	13.57	□□□□□ -0.24
DED1	YOR204W	YPL260W	Q08977	551 aa		13.57	□□□□□ -0.24
DED1	YOR204W	SSF2	Q12153	453 aa	Predicted RBP	13.57	□□□□□ -0.24
DED1	YOR204W	RTS1	P38903	757 aa		13.57	□□□□□ -0.24
DED1	YOR204W	MRD1	Q06106	887 aa	Known RBP	13.57	□□□□□ -0.24
DED1	YOR204W	PEP3	P27801	918 aa		13.56	□□□□□ -0.24
DED1	YOR204W	EBP2	P36049	427 aa	Known RBP	13.56	□□□□□ -0.24
DED1	YOR204W	PCT1	P13259	424 aa		13.55	□□□□□ -0.24
DED1	YOR204W	RER2	P35196	286 aa		13.55	□□□□□ -0.24
DED1	YOR204W	VID27	P40157	782 aa		13.55	□□□□□ -0.24
DED1	YOR204W	SPN1	Q06505	410 aa	Predicted RBP	13.55	□□□□□ -0.24
DED1	YOR204W	PRO3	P32263	286 aa	Known RBP	13.55	□□□□□ -0.24
DED1	YOR204W	CRG1	P38892	291 aa	RIP-Chip data	13.55	□□□□□ -0.24	not detected
DED1	YOR204W	ESF1	Q06344	628 aa	Known RBP	13.55	□□□□□ -0.24
DED1	YOR204W	TSR3	Q12094	313 aa	Known RBP	13.55	□□□□□ -0.24
DED1	YOR204W	RNR2	P09938	399 aa	Known RBP	13.54	□□□□□ -0.24
DED1	YOR204W	TPM1	P17536	199 aa	Known RBP	13.54	□□□□□ -0.24
DED1	YOR204W	ADP1	P25371	1049 aa		13.53	□□□□□ -0.24
DED1	YOR204W	KEL1	P38853	1164 aa	Known RBP	13.53	□□□□□ -0.24
DED1	YOR204W	SRS2	P12954	1174 aa		13.53	□□□□□ -0.24
DED1	YOR204W	SPO22	P40511	975 aa		13.53	□□□□□ -0.24
DED1	YOR204W	MYO3	P36006	1272 aa		13.52	□□□□□ -0.25
DED1	YOR204W	PCL8	Q08966	492 aa		13.52	□□□□□ -0.25
DED1	YOR204W	RAD61	Q99359	647 aa		13.52	□□□□□ -0.25
DED1	YOR204W	ANP1	P32629	500 aa		13.51	□□□□□ -0.25
DED1	YOR204W	ECM23	Q02710	187 aa		13.51	□□□□□ -0.25
DED1	YOR204W	CAB3	P36076	571 aa		13.5	□□□□□ -0.25
DED1	YOR204W	VPS20	Q04272	221 aa		13.5	□□□□□ -0.25
DED1	YOR204W	PMA1	P05030	918 aa	Known RBP	13.5	□□□□□ -0.25
DED1	YOR204W	SSA4	P22202	642 aa	Known RBP	13.5	□□□□□ -0.25
DED1	YOR204W	RAD53	P22216	821 aa		13.5	□□□□□ -0.25
DED1	YOR204W	RIT1	P23796	513 aa		13.5	□□□□□ -0.25
DED1	YOR204W	YBL028C	P38202	106 aa		13.5	□□□□□ -0.25
DED1	YOR204W	NIT1	P40447	199 aa		13.5	□□□□□ -0.25
DED1	YOR204W	NPA3	P47122	385 aa		13.5	□□□□□ -0.25
DED1	YOR204W	ACE2	P21192	770 aa		13.49	□□□□□ -0.25
DED1	YOR204W	VHR2	P40041	505 aa		13.49	□□□□□ -0.25
DED1	YOR204W	ENT3	P47160	408 aa		13.49	□□□□□ -0.25
DED1	YOR204W	ARP5	P53946	755 aa		13.49	□□□□□ -0.25
DED1	YOR204W	EST2	Q06163	884 aa		13.49	□□□□□ -0.25
DED1	YOR204W	YDL124W	Q07551	312 aa	Known RBP	13.49	□□□□□ -0.25
DED1	YOR204W	TUB2	P02557	457 aa	Known RBP	13.48	□□□□□ -0.25
DED1	YOR204W	FBP26	P32604	452 aa		13.48	□□□□□ -0.25
DED1	YOR204W	SPT21	P35209	758 aa		13.48	□□□□□ -0.25
DED1	YOR204W	TFC6	Q06339	672 aa		13.48	□□□□□ -0.25
DED1	YOR204W	PRE8	P23639	250 aa		13.48	□□□□□ -0.25
DED1	YOR204W	KIN1	P13185	1064 aa		13.47	□□□□□ -0.25
DED1	YOR204W	PNT1	P38969	423 aa		13.47	□□□□□ -0.25
DED1	YOR204W	PEA2	P40091	420 aa		13.47	□□□□□ -0.25
DED1	YOR204W	CSM2	P40465	213 aa		13.47	□□□□□ -0.25
DED1	YOR204W	MSH4	P40965	878 aa	Predicted RBP	13.47	□□□□□ -0.25
DED1	YOR204W	EPL1	P43572	832 aa		13.47	□□□□□ -0.25
DED1	YOR204W	SRM1	P21827	482 aa		13.46	□□□□□ -0.25
DED1	YOR204W	CHS3	P29465	1165 aa		13.46	□□□□□ -0.25
DED1	YOR204W	CTF18	P49956	741 aa		13.46	□□□□□ -0.25
DED1	YOR204W	VPS8	P39702	1274 aa		13.46	□□□□□ -0.26
DED1	YOR204W	AAD16	Q02895	342 aa		13.46	□□□□□ -0.26
DED1	YOR204W	CSR2	Q12734	1121 aa		13.46	□□□□□ -0.26
DED1	YOR204W	AKR1	P39010	764 aa		13.44	□□□□□ -0.26
DED1	YOR204W	MATALPHA2	P0CY08	210 aa		13.43	□□□□□ -0.26
DED1	YOR204W	HMLALPHA2	P0CY09	210 aa		13.43	□□□□□ -0.26
DED1	YOR204W	MAK31	P23059	88 aa		13.43	□□□□□ -0.26
DED1	YOR204W	PEX21	P50091	288 aa		13.43	□□□□□ -0.26
DED1	YOR204W	LAP2	Q10740	671 aa		13.43	□□□□□ -0.26
DED1	YOR204W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	13.43	□□□□□ -0.26	not detected
DED1	YOR204W	CWC15	Q03772	175 aa	Known RBP	13.43	□□□□□ -0.26
DED1	YOR204W	SKG3	Q06315	1026 aa		13.43	□□□□□ -0.26
DED1	YOR204W	YKE2	P52553	114 aa		13.42	□□□□□ -0.26
DED1	YOR204W	YGL081W	P53156	320 aa		13.42	□□□□□ -0.26
DED1	YOR204W	MYO5	Q04439	1219 aa	Known RBP	13.42	□□□□□ -0.26
DED1	YOR204W	YOR111W	Q99210	232 aa		13.42	□□□□□ -0.26
DED1	YOR204W	MPH3	P0CE00	602 aa		13.41	□□□□□ -0.26
DED1	YOR204W	IME2	P32581	645 aa		13.41	□□□□□ -0.26
DED1	YOR204W	CST26	P38226	397 aa		13.41	□□□□□ -0.26
DED1	YOR204W	YIL089W	P40500	205 aa		13.41	□□□□□ -0.26
DED1	YOR204W	RPL19A	P0CX82	189 aa	Known RBP	13.41	□□□□□ -0.26
DED1	YOR204W	RPL19B	P0CX83	189 aa	Predicted RBP	13.41	□□□□□ -0.26
DED1	YOR204W	KRS1	P15180	591 aa	Known RBP	13.41	□□□□□ -0.26
DED1	YOR204W	SAM2	P19358	384 aa	Known RBP	13.41	□□□□□ -0.26
DED1	YOR204W	RPT6	Q01939	405 aa	Known RBP	13.41	□□□□□ -0.26
DED1	YOR204W	PEX29	Q03370	554 aa		13.41	□□□□□ -0.26
DED1	YOR204W	HCA4	P20448	770 aa	Known RBP	13.4	□□□□□ -0.26
DED1	YOR204W	TPS3	P38426	1054 aa	Known RBP	13.39	□□□□□ -0.27
DED1	YOR204W	YLR407W	Q06070	228 aa		13.39	□□□□□ -0.27
DED1	YOR204W	DJP1	P40564	432 aa		13.39	□□□□□ -0.27
DED1	YOR204W	GAL2	P13181	574 aa		13.38	□□□□□ -0.27
DED1	YOR204W	SPB4	P25808	606 aa	Predicted RBP	13.38	□□□□□ -0.27
DED1	YOR204W	ACA1	P39970	489 aa		13.38	□□□□□ -0.27
DED1	YOR204W	SNU71	P53207	620 aa	Known RBP	13.38	□□□□□ -0.27
DED1	YOR204W	VPS30	Q02948	557 aa		13.38	□□□□□ -0.27

Retrieved 100 of 5,963 RNA–protein pairs in 78.8 ms