RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W SLP1Q12232 587 aa6.72□□□□□ -1.33
ROT1YMR200W PAM1P37304 830 aaKnown RBP6.71□□□□□ -1.34
ROT1YMR200W YPL034WQ03083 165 aa6.71□□□□□ -1.34
ROT1YMR200W TY4B-PA0A0B7P3V8 1104 aa6.69□□□□□ -1.34
ROT1YMR200W SBP1P10080 294 aaKnown RBP6.69□□□□□ -1.34
ROT1YMR200W SMC1P32908 1225 aa6.69□□□□□ -1.34
ROT1YMR200W YBR287WP38355 427 aa6.69□□□□□ -1.34
ROT1YMR200W GLO3P38682 493 aaKnown RBP6.69□□□□□ -1.34
ROT1YMR200W PSY2P40164 858 aa6.69□□□□□ -1.34
ROT1YMR200W BIO5P53744 561 aaKnown RBP6.69□□□□□ -1.34
ROT1YMR200W TY4A-HQ6Q5P6 413 aa6.69□□□□□ -1.34
ROT1YMR200W FUS1P11710 512 aa6.68□□□□□ -1.34
ROT1YMR200W IRS4P36115 615 aaKnown RBP6.68□□□□□ -1.34
ROT1YMR200W BRN1P38170 754 aa6.68□□□□□ -1.34
ROT1YMR200W QDR1P40475 563 aa6.68□□□□□ -1.34
ROT1YMR200W SAC7P17121 654 aa6.67□□□□□ -1.34
ROT1YMR200W SOG2Q08817 791 aa6.67□□□□□ -1.34
ROT1YMR200W SFA1P32771 386 aa6.66□□□□□ -1.34
ROT1YMR200W ATG1P53104 897 aa6.66□□□□□ -1.34
ROT1YMR200W YRB30P53107 440 aaPredicted RBP6.66□□□□□ -1.34
ROT1YMR200W YTA7P40340 1379 aa6.66□□□□□ -1.34
ROT1YMR200W PYC2P32327 1180 aaKnown RBP6.65□□□□□ -1.34
ROT1YMR200W PGM1P33401 570 aaKnown RBP6.65□□□□□ -1.34
ROT1YMR200W PAN5P38787 379 aa6.65□□□□□ -1.34
ROT1YMR200W ARI1P53111 347 aaKnown RBP6.65□□□□□ -1.34
ROT1YMR200W TY1A-NL1Q12391 440 aaKnown RBP6.65□□□□□ -1.34
ROT1YMR200W HEM3P28789 327 aa6.64□□□□□ -1.35
ROT1YMR200W CDC3P32457 520 aaKnown RBP6.64□□□□□ -1.35
ROT1YMR200W GUP1P53154 560 aa6.63□□□□□ -1.35
ROT1YMR200W CTR9P89105 1077 aa6.63□□□□□ -1.35
ROT1YMR200W COBP00163 385 aa6.62□□□□□ -1.35
ROT1YMR200W TRL1P09880 827 aaKnown RBP6.62□□□□□ -1.35
ROT1YMR200W HVG1P0CE11 249 aa6.62□□□□□ -1.35
ROT1YMR200W SSF1P38789 453 aaPredicted RBP6.62□□□□□ -1.35
ROT1YMR200W YJR124CP47159 448 aa6.62□□□□□ -1.35
ROT1YMR200W GLO4Q12320 285 aa6.62□□□□□ -1.35
ROT1YMR200W NRD1P53617 575 aaKnown RBP RIP-Chip data6.61□□□□□ -1.35 RIP-Chip
ROT1YMR200W YNR065CP53751 1116 aa6.61□□□□□ -1.35
ROT1YMR200W SEN54Q02825 467 aaPredicted RBP6.61□□□□□ -1.35
ROT1YMR200W POL5P39985 1022 aaKnown RBP6.6□□□□□ -1.35
ROT1YMR200W DSE4P53753 1117 aa6.6□□□□□ -1.35
ROT1YMR200W UFD2P54860 961 aa6.6□□□□□ -1.35
ROT1YMR200W RSC6P25632 483 aa6.59□□□□□ -1.35
ROT1YMR200W SPC42P36094 363 aa6.59□□□□□ -1.35
ROT1YMR200W ERP5P38819 212 aa6.59□□□□□ -1.35
ROT1YMR200W NEO1P40527 1151 aa6.59□□□□□ -1.35
ROT1YMR200W ACF4P47129 309 aa6.59□□□□□ -1.35
ROT1YMR200W RSC4Q02206 625 aa6.59□□□□□ -1.35
ROT1YMR200W HAS1Q03532 505 aaKnown RBP6.59□□□□□ -1.35
ROT1YMR200W MNL2Q12205 849 aa6.59□□□□□ -1.35
ROT1YMR200W DUR3P33413 735 aa6.58□□□□□ -1.36
ROT1YMR200W GRS1P38088 690 aaKnown RBP6.58□□□□□ -1.36
ROT1YMR200W LEM3P42838 414 aa6.58□□□□□ -1.36
ROT1YMR200W ALO1P54783 526 aaKnown RBP6.58□□□□□ -1.36
ROT1YMR200W TRS120Q04183 1289 aa6.58□□□□□ -1.36
ROT1YMR200W REC8Q12188 680 aa6.58□□□□□ -1.36
ROT1YMR200W MDJ2P42834 146 aa6.57□□□□□ -1.36
ROT1YMR200W FAR11P53917 953 aa6.57□□□□□ -1.36
ROT1YMR200W SPO71Q03868 1245 aa6.57□□□□□ -1.36
ROT1YMR200W YBL113CQ7M4S9 792 aa6.57□□□□□ -1.36
ROT1YMR200W ERS1P17261 260 aa6.56□□□□□ -1.36
ROT1YMR200W NAM7P30771 971 aaKnown RBP6.56□□□□□ -1.36
ROT1YMR200W NUG1P40010 520 aaKnown RBP6.56□□□□□ -1.36
ROT1YMR200W DOS2P54858 310 aa6.56□□□□□ -1.36
ROT1YMR200W ELG1Q12050 791 aa6.56□□□□□ -1.36
ROT1YMR200W YLR122CQ12312 125 aa6.56□□□□□ -1.36
ROT1YMR200W HAT1Q12341 374 aa6.56□□□□□ -1.36
ROT1YMR200W FRT1Q99332 602 aa6.56□□□□□ -1.36
ROT1YMR200W COQ2P32378 372 aa6.55□□□□□ -1.36
ROT1YMR200W OCA5P38738 679 aa6.55□□□□□ -1.36
ROT1YMR200W AKR1P39010 764 aa6.55□□□□□ -1.36
ROT1YMR200W FET4P40988 552 aa6.55□□□□□ -1.36
ROT1YMR200W MAE1P36013 669 aaKnown RBP6.54□□□□□ -1.36
ROT1YMR200W NCE103P53615 221 aa6.54□□□□□ -1.36
ROT1YMR200W TRP3P00937 484 aa6.53□□□□□ -1.36
ROT1YMR200W RIM11P38615 370 aa6.53□□□□□ -1.36
ROT1YMR200W RTS3P53289 263 aa6.53□□□□□ -1.36
ROT1YMR200W YNL011CP53980 444 aa6.53□□□□□ -1.36
ROT1YMR200W PUF3Q07807 879 aaKnown RBP RIP-Chip data6.53□□□□□ -1.36not detected
ROT1YMR200W GPI13Q07830 1017 aa6.53□□□□□ -1.36
ROT1YMR200W CMR1Q12510 522 aaKnown RBP6.53□□□□□ -1.36
ROT1YMR200W YKR073CP36153 106 aa6.52□□□□□ -1.37
ROT1YMR200W SAF1P38352 637 aa6.52□□□□□ -1.37
ROT1YMR200W ATG36P46983 293 aa6.52□□□□□ -1.37
ROT1YMR200W INP52P50942 1183 aa6.52□□□□□ -1.37
ROT1YMR200W NUT2Q06213 157 aa6.52□□□□□ -1.37
ROT1YMR200W MAC1P35192 417 aa6.51□□□□□ -1.37
ROT1YMR200W KAE1P36132 386 aa6.51□□□□□ -1.37
ROT1YMR200W OMA1P36163 345 aa6.51□□□□□ -1.37
ROT1YMR200W KIP3P53086 805 aaKnown RBP6.51□□□□□ -1.37
ROT1YMR200W CDC55Q00362 526 aa6.51□□□□□ -1.37
ROT1YMR200W NPR1P22211 790 aa6.5□□□□□ -1.37
ROT1YMR200W ASF1P32447 279 aa6.5□□□□□ -1.37
ROT1YMR200W BSC2Q05611 235 aa6.5□□□□□ -1.37
ROT1YMR200W FPR4Q06205 392 aaPredicted RBP6.5□□□□□ -1.37
ROT1YMR200W FLP1P03870 423 aa6.49□□□□□ -1.37
ROT1YMR200W YJR008WP47085 338 aa6.49□□□□□ -1.37
ROT1YMR200W SUB1P54000 292 aaKnown RBP6.49□□□□□ -1.37
ROT1YMR200W MSH6Q03834 1242 aa6.49□□□□□ -1.37
ROT1YMR200W YHL008CP38750 627 aa6.48□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 43 ms