RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	ECM16	Q04217	1267 aa	Known RBP	5.75	□□□□□ -1.49
NUP116	YMR047C	YLR225C	Q05948	407 aa	Known RBP	5.75	□□□□□ -1.49
NUP116	YMR047C	PDR18	P53756	1333 aa		5.75	□□□□□ -1.49
NUP116	YMR047C	IME2	P32581	645 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	MLC1	P53141	149 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	ISW1	P38144	1129 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	KEL1	P38853	1164 aa	Known RBP	5.74	□□□□□ -1.49
NUP116	YMR047C	SKG3	Q06315	1026 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	GIN4	Q12263	1142 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	NCB2	Q92317	146 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	ERG7	P38604	731 aa		5.74	□□□□□ -1.49
NUP116	YMR047C	TIF4631	P39935	952 aa	Known RBP	5.74	□□□□□ -1.49
NUP116	YMR047C	MCM1	P11746	286 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	OCT1	P35999	772 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	YGL242C	P53066	181 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	YAF9	P53930	226 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	KAR5	Q04746	504 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	TUS1	Q06412	1307 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	OPI1	P21957	404 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	PRS1	P32895	427 aa	Known RBP	5.73	□□□□□ -1.49
NUP116	YMR047C	BOI1	P38041	980 aa	Known RBP	5.73	□□□□□ -1.49
NUP116	YMR047C	YNG2	P38806	282 aa	Known RBP	5.73	□□□□□ -1.49
NUP116	YMR047C	VAB2	P40003	282 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	NMD2	P38798	1089 aa	Known RBP	5.73	□□□□□ -1.49
NUP116	YMR047C	LYS14	P40971	790 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	YGR122W	P53272	402 aa		5.73	□□□□□ -1.49
NUP116	YMR047C	SUB2	Q07478	446 aa	Known RBP	5.73	□□□□□ -1.49
NUP116	YMR047C	TY1B-A	O13527	1196 aa	Known RBP	5.72	□□□□□ -1.49
NUP116	YMR047C	HSP82	P02829	709 aa	Known RBP	5.72	□□□□□ -1.49
NUP116	YMR047C	MSH3	P25336	1018 aa		5.72	□□□□□ -1.49
NUP116	YMR047C	MXR1	P40029	184 aa		5.72	□□□□□ -1.49
NUP116	YMR047C	HXT10	P43581	546 aa		5.72	□□□□□ -1.49
NUP116	YMR047C	SDH2	P21801	266 aa		5.71	□□□□□ -1.49
NUP116	YMR047C	ADP1	P25371	1049 aa		5.71	□□□□□ -1.49
NUP116	YMR047C	TIM23	P32897	222 aa		5.71	□□□□□ -1.49
NUP116	YMR047C	PTK1	P36002	662 aa	Predicted RBP	5.71	□□□□□ -1.49
NUP116	YMR047C	RAD26	P40352	1085 aa		5.71	□□□□□ -1.49
NUP116	YMR047C	PIP2	P52960	996 aa		5.71	□□□□□ -1.49
NUP116	YMR047C	ERG12	P07277	443 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	TPO2	P53283	614 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	PMA1	P05030	918 aa	Known RBP	5.71	□□□□□ -1.5
NUP116	YMR047C	ASH1	P34233	588 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	WHI3	P34761	661 aa	Known RBP	5.71	□□□□□ -1.5
NUP116	YMR047C	MAC1	P35192	417 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	SOL4	P53315	255 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	SEN54	Q02825	467 aa	Predicted RBP	5.71	□□□□□ -1.5
NUP116	YMR047C	FMP30	Q02883	468 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	TLG1	Q03322	224 aa		5.71	□□□□□ -1.5
NUP116	YMR047C	CLF1	Q12309	687 aa	Predicted RBP	5.71	□□□□□ -1.5
NUP116	YMR047C	SWC3	P31376	625 aa		5.7	□□□□□ -1.5
NUP116	YMR047C	EPS1	P40557	701 aa		5.7	□□□□□ -1.5
NUP116	YMR047C	ICL2	Q12031	575 aa		5.7	□□□□□ -1.5
NUP116	YMR047C	CDC60	P26637	1090 aa	Known RBP	5.7	□□□□□ -1.5
NUP116	YMR047C	CST26	P38226	397 aa		5.7	□□□□□ -1.5
NUP116	YMR047C	INM2	Q05533	292 aa		5.7	□□□□□ -1.5
NUP116	YMR047C	YFL040W	P43562	540 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	BBC1	P47068	1157 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	ECM30	Q06673	1274 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.69	□□□□□ -1.5	not detected
NUP116	YMR047C	RPS0A	P32905	252 aa	Known RBP	5.69	□□□□□ -1.5
NUP116	YMR047C	SEC9	P40357	651 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	EAR1	Q03212	550 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	TAH18	Q12181	623 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	SEC20	P28791	383 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	YKR018C	P36114	725 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	RRI2	Q12348	645 aa		5.69	□□□□□ -1.5
NUP116	YMR047C	ECM21	P38167	1117 aa	Known RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	GPB2	P39717	880 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	PIL1	P53252	339 aa	Known RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	YNL193W	P53870	558 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
NUP116	YMR047C	PKC1	P24583	1151 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	KTR3	P38130	404 aa	Predicted RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	RTS1	P38903	757 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	PKH3	Q03306	898 aa	Predicted RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	BRE1	Q07457	700 aa	Known RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	CFT2	Q12102	859 aa	Predicted RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	PNT1	P38969	423 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	GSM1	P42950	618 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	NNF2	P53253	936 aa		5.68	□□□□□ -1.5
NUP116	YMR047C	RPN7	Q06103	429 aa	Known RBP	5.68	□□□□□ -1.5
NUP116	YMR047C	NOT3	P06102	836 aa	Known RBP	5.67	□□□□□ -1.5
NUP116	YMR047C	PRE8	P23639	250 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	SIC1	P38634	284 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	ACA1	P39970	489 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	ENP2	P48234	707 aa	Known RBP	5.67	□□□□□ -1.5
NUP116	YMR047C	GUD1	Q07729	489 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	RAD61	Q99359	647 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	MYO1	P08964	1928 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	POL32	P47110	350 aa		5.67	□□□□□ -1.5
NUP116	YMR047C	SRM1	P21827	482 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	GRX7	P38068	203 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	IRC8	P47046	822 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	SPO1	P53541	631 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	YSH1	Q06224	779 aa	Predicted RBP	5.66	□□□□□ -1.5
NUP116	YMR047C	PLP2	Q12017	286 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	RAD50	P12753	1312 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	ECM29	P38737	1868 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	LAM4	P38800	1345 aa		5.66	□□□□□ -1.5
NUP116	YMR047C	RRP14	P36080	434 aa	Known RBP	5.66	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms