RNA–Protein interactions for RNA: YML097C

VPS9, Transcript of Guanine nucleotide exchange factor (GEF), yeast

Gene VPS9, Length 1,356 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS9	YML097C	NMD2	P38798	1089 aa	Known RBP	4.65	□□□□□ -1.67
VPS9	YML097C	FAA3	P39002	694 aa		4.65	□□□□□ -1.67
VPS9	YML097C	FIR1	P40020	876 aa		4.65	□□□□□ -1.67
VPS9	YML097C	YGR122W	P53272	402 aa		4.65	□□□□□ -1.67
VPS9	YML097C	KRE33	P53914	1056 aa	Known RBP	4.65	□□□□□ -1.67
VPS9	YML097C	DAL4	Q04895	635 aa		4.65	□□□□□ -1.67
VPS9	YML097C	INP54	Q08227	384 aa	Known RBP	4.65	□□□□□ -1.67
VPS9	YML097C	GLT1	Q12680	2145 aa	Known RBP	4.64	□□□□□ -1.67
VPS9	YML097C	RAD2	P07276	1031 aa		4.64	□□□□□ -1.67
VPS9	YML097C	MLF3	P32047	452 aa		4.64	□□□□□ -1.67
VPS9	YML097C	YHL008C	P38750	627 aa		4.64	□□□□□ -1.67
VPS9	YML097C	SKN7	P38889	622 aa		4.64	□□□□□ -1.67
VPS9	YML097C	QDR2	P40474	542 aa		4.64	□□□□□ -1.67
VPS9	YML097C	IOC3	P43596	787 aa		4.64	□□□□□ -1.67
VPS9	YML097C	YNL165W	P53891	406 aa		4.64	□□□□□ -1.67
VPS9	YML097C	CDC53	Q12018	815 aa	Known RBP	4.64	□□□□□ -1.67
VPS9	YML097C	SSF2	Q12153	453 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS9	YML097C	DYS1	P38791	387 aa		4.63	□□□□□ -1.67
VPS9	YML097C	MTO1	P53070	669 aa		4.63	□□□□□ -1.67
VPS9	YML097C	PRI2	P20457	528 aa		4.62	□□□□□ -1.67
VPS9	YML097C	DOS2	P54858	310 aa		4.62	□□□□□ -1.67
VPS9	YML097C	CIT2	P08679	460 aa		4.61	□□□□□ -1.67
VPS9	YML097C	MSN1	P22148	382 aa		4.61	□□□□□ -1.67
VPS9	YML097C	YTA6	P40328	754 aa		4.61	□□□□□ -1.67
VPS9	YML097C	MRPS18	P42847	217 aa		4.61	□□□□□ -1.67
VPS9	YML097C	OSW7	P43611	510 aa		4.61	□□□□□ -1.67
VPS9	YML097C	RSC4	Q02206	625 aa		4.61	□□□□□ -1.67
VPS9	YML097C	GDE1	Q02979	1223 aa		4.61	□□□□□ -1.67
VPS9	YML097C	NSE3	Q05541	303 aa		4.61	□□□□□ -1.67
VPS9	YML097C	SYT1	Q06836	1226 aa		4.61	□□□□□ -1.67
VPS9	YML097C	YOR131C	Q12486	218 aa		4.61	□□□□□ -1.67
VPS9	YML097C	TIF6	Q12522	245 aa	Known RBP	4.61	□□□□□ -1.67
VPS9	YML097C	HXK1	P04806	485 aa	Known RBP	4.6	□□□□□ -1.67
VPS9	YML097C	DIT1	P21623	536 aa		4.6	□□□□□ -1.67
VPS9	YML097C	MNR2	P35724	969 aa		4.6	□□□□□ -1.67
VPS9	YML097C	IRS4	P36115	615 aa	Known RBP	4.6	□□□□□ -1.67
VPS9	YML097C	PSY2	P40164	858 aa		4.6	□□□□□ -1.67
VPS9	YML097C	RGD2	P43556	714 aa		4.6	□□□□□ -1.67
VPS9	YML097C	PRE9	P23638	258 aa	Known RBP	4.59	□□□□□ -1.67
VPS9	YML097C	DAL1	P32375	460 aa		4.59	□□□□□ -1.67
VPS9	YML097C	PRP40	P33203	583 aa	Known RBP	4.59	□□□□□ -1.67
VPS9	YML097C	RRP14	P36080	434 aa	Known RBP	4.59	□□□□□ -1.67
VPS9	YML097C	ECM2	P38241	364 aa	Known RBP	4.59	□□□□□ -1.67
VPS9	YML097C	BSD2	P38356	321 aa		4.59	□□□□□ -1.67
VPS9	YML097C	NTA1	P40354	457 aa		4.59	□□□□□ -1.67
VPS9	YML097C	MON1	P53129	644 aa		4.59	□□□□□ -1.67
VPS9	YML097C	MCA1	Q08601	432 aa		4.59	□□□□□ -1.67
VPS9	YML097C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
VPS9	YML097C	GRX1	P25373	110 aa	Known RBP	4.58	□□□□□ -1.68
VPS9	YML097C	UGA4	P32837	571 aa		4.58	□□□□□ -1.68
VPS9	YML097C	MAC1	P35192	417 aa		4.58	□□□□□ -1.68
VPS9	YML097C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
VPS9	YML097C	YJL049W	P47048	450 aa		4.58	□□□□□ -1.68
VPS9	YML097C	VTC4	P47075	721 aa		4.58	□□□□□ -1.68
VPS9	YML097C	FAA4	P47912	694 aa	Known RBP	4.58	□□□□□ -1.68
VPS9	YML097C	ALG12	P53730	551 aa		4.58	□□□□□ -1.68
VPS9	YML097C	FAR11	P53917	953 aa		4.58	□□□□□ -1.68
VPS9	YML097C	YCS4	Q06156	1176 aa		4.58	□□□□□ -1.68
VPS9	YML097C	UTP4	Q06679	776 aa	Known RBP	4.58	□□□□□ -1.68
VPS9	YML097C	MCD1	Q12158	566 aa		4.58	□□□□□ -1.68
VPS9	YML097C	KAP122	P32767	1081 aa		4.57	□□□□□ -1.68
VPS9	YML097C	SLN1	P39928	1220 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS9	YML097C	BOI2	P39969	1040 aa		4.57	□□□□□ -1.68
VPS9	YML097C	JJJ2	P46997	583 aa		4.57	□□□□□ -1.68
VPS9	YML097C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	RIP-Chip
VPS9	YML097C	FLP1	P03870	423 aa		4.56	□□□□□ -1.68
VPS9	YML097C	KAR2	P16474	682 aa	Known RBP	4.56	□□□□□ -1.68
VPS9	YML097C	MCM5	P29496	775 aa	Known RBP	4.56	□□□□□ -1.68
VPS9	YML097C	SHM1	P37292	490 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS9	YML097C	AHP1	P38013	176 aa	Known RBP	4.56	□□□□□ -1.68
VPS9	YML097C	ISW1	P38144	1129 aa		4.56	□□□□□ -1.68
VPS9	YML097C	GIP1	P38229	639 aa		4.56	□□□□□ -1.68
VPS9	YML097C	YBR287W	P38355	427 aa		4.56	□□□□□ -1.68
VPS9	YML097C	SSN3	P39073	555 aa		4.56	□□□□□ -1.68
VPS9	YML097C	TIM54	P47045	478 aa		4.56	□□□□□ -1.68
VPS9	YML097C	UBP15	P50101	1230 aa		4.56	□□□□□ -1.68
VPS9	YML097C	HUL5	P53119	910 aa		4.56	□□□□□ -1.68
VPS9	YML097C	TDA5	Q06417	326 aa	Known RBP	4.56	□□□□□ -1.68
VPS9	YML097C	BDF2	Q07442	638 aa		4.56	□□□□□ -1.68
VPS9	YML097C	RAD4	P14736	754 aa		4.55	□□□□□ -1.68
VPS9	YML097C	YCK2	P23292	546 aa	Known RBP	4.55	□□□□□ -1.68
VPS9	YML097C	AIM46	P38885	310 aa		4.55	□□□□□ -1.68
VPS9	YML097C	RPN4	Q03465	531 aa		4.55	□□□□□ -1.68
VPS9	YML097C	FAL1	Q12099	399 aa	Known RBP	4.55	□□□□□ -1.68
VPS9	YML097C	RPS31	P05759	152 aa	Known RBP	4.54	□□□□□ -1.68
VPS9	YML097C	CDC34	P14682	295 aa		4.54	□□□□□ -1.68
VPS9	YML097C	TSR4	P25040	408 aa		4.54	□□□□□ -1.68
VPS9	YML097C	IRE1	P32361	1115 aa		4.54	□□□□□ -1.68
VPS9	YML097C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
VPS9	YML097C	FPR3	P38911	411 aa	Known RBP	4.54	□□□□□ -1.68
VPS9	YML097C	RSM26	P47141	266 aa		4.54	□□□□□ -1.68
VPS9	YML097C	ULP1	Q02724	621 aa		4.54	□□□□□ -1.68
VPS9	YML097C	BAS1	P22035	811 aa		4.53	□□□□□ -1.68
VPS9	YML097C	AMN1	P38285	549 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS9	YML097C	LSB6	P42951	607 aa		4.53	□□□□□ -1.68
VPS9	YML097C	NAN1	Q02931	896 aa	Known RBP	4.53	□□□□□ -1.68
VPS9	YML097C	YPL109C	Q02981	657 aa		4.53	□□□□□ -1.68
VPS9	YML097C	MRL1	Q06815	381 aa		4.53	□□□□□ -1.68
VPS9	YML097C	OPI10	Q08202	246 aa		4.53	□□□□□ -1.68
VPS9	YML097C	YOR296W	Q08748	1289 aa		4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms