RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	PKH3	Q03306	898 aa	Predicted RBP	4.56	□□□□□ -1.68
USA1	YML029W	GAS5	Q08193	484 aa		4.56	□□□□□ -1.68
USA1	YML029W	STM1	P39015	273 aa	Known RBP	4.56	□□□□□ -1.68
USA1	YML029W	YIR014W	P40570	242 aa		4.56	□□□□□ -1.68
USA1	YML029W	MRPS35	P53292	345 aa		4.56	□□□□□ -1.68
USA1	YML029W	GCR2	Q01722	534 aa		4.56	□□□□□ -1.68
USA1	YML029W	SEN54	Q02825	467 aa	Predicted RBP	4.56	□□□□□ -1.68
USA1	YML029W	VAS1	P07806	1104 aa	Known RBP	4.55	□□□□□ -1.68
USA1	YML029W	CRG1	P38892	291 aa	RIP-Chip data	4.55	□□□□□ -1.68	not detected
USA1	YML029W	NIT1	P40447	199 aa		4.55	□□□□□ -1.68
USA1	YML029W	RIM20	Q12033	661 aa		4.55	□□□□□ -1.68
USA1	YML029W	CSR2	Q12734	1121 aa		4.55	□□□□□ -1.68
USA1	YML029W	THS1	P04801	734 aa	Known RBP	4.55	□□□□□ -1.68
USA1	YML029W	SSA4	P22202	642 aa	Known RBP	4.55	□□□□□ -1.68
USA1	YML029W	GRX7	P38068	203 aa		4.55	□□□□□ -1.68
USA1	YML029W	YNR021W	P53723	404 aa	Known RBP	4.55	□□□□□ -1.68
USA1	YML029W	RMD1	Q03441	430 aa		4.55	□□□□□ -1.68
USA1	YML029W	FPR4	Q06205	392 aa	Predicted RBP	4.55	□□□□□ -1.68
USA1	YML029W	AIM7	Q12156	149 aa		4.55	□□□□□ -1.68
USA1	YML029W	FLO1	P32768	1537 aa		4.55	□□□□□ -1.68
USA1	YML029W	RPS7A	P26786	190 aa	Known RBP	4.54	□□□□□ -1.68
USA1	YML029W	MDL2	P33311	773 aa		4.54	□□□□□ -1.68
USA1	YML029W	BRN1	P38170	754 aa		4.54	□□□□□ -1.68
USA1	YML029W	OPY1	P38271	328 aa		4.54	□□□□□ -1.68
USA1	YML029W	TPS3	P38426	1054 aa	Known RBP	4.54	□□□□□ -1.68
USA1	YML029W	TOS4	Q06266	489 aa		4.54	□□□□□ -1.68
USA1	YML029W	YPL260W	Q08977	551 aa		4.54	□□□□□ -1.68
USA1	YML029W	RAD61	Q99359	647 aa		4.54	□□□□□ -1.68
USA1	YML029W	HO	P09932	586 aa		4.54	□□□□□ -1.68
USA1	YML029W	RAD53	P22216	821 aa		4.54	□□□□□ -1.68
USA1	YML029W	PER1	P25625	357 aa		4.54	□□□□□ -1.68
USA1	YML029W	DLD1	P32891	587 aa		4.54	□□□□□ -1.68
USA1	YML029W	AAP1	P37898	856 aa	Known RBP	4.54	□□□□□ -1.68
USA1	YML029W	YIL089W	P40500	205 aa		4.54	□□□□□ -1.68
USA1	YML029W	ALG2	P43636	503 aa		4.54	□□□□□ -1.68
USA1	YML029W	FAR11	P53917	953 aa		4.54	□□□□□ -1.68
USA1	YML029W	SPN1	Q06505	410 aa	Predicted RBP	4.54	□□□□□ -1.68
USA1	YML029W	FLO11	P08640	1367 aa		4.54	□□□□□ -1.68
USA1	YML029W	CBP1	P07252	654 aa		4.53	□□□□□ -1.68
USA1	YML029W	ERG12	P07277	443 aa		4.53	□□□□□ -1.68
USA1	YML029W	PBS2	P08018	668 aa		4.53	□□□□□ -1.68
USA1	YML029W	HPR1	P17629	752 aa	Known RBP	4.53	□□□□□ -1.68
USA1	YML029W	CST26	P38226	397 aa		4.53	□□□□□ -1.68
USA1	YML029W	GUA1	P38625	525 aa	Known RBP	4.53	□□□□□ -1.68
USA1	YML029W	RSC30	P38781	883 aa		4.53	□□□□□ -1.68
USA1	YML029W	VHR2	P40041	505 aa		4.53	□□□□□ -1.68
USA1	YML029W	YAF9	P53930	226 aa		4.53	□□□□□ -1.68
USA1	YML029W	RPS15	Q01855	142 aa	Known RBP	4.53	□□□□□ -1.68
USA1	YML029W	SKG3	Q06315	1026 aa		4.53	□□□□□ -1.68
USA1	YML029W	LAM4	P38800	1345 aa		4.53	□□□□□ -1.68
USA1	YML029W	RRP8	P38961	392 aa	Known RBP	4.53	□□□□□ -1.68
USA1	YML029W	SLN1	P39928	1220 aa	Predicted RBP	4.53	□□□□□ -1.68
USA1	YML029W	PIB2	P53191	635 aa		4.53	□□□□□ -1.68
USA1	YML029W	SOL4	P53315	255 aa		4.53	□□□□□ -1.68
USA1	YML029W	SUB2	Q07478	446 aa	Known RBP	4.53	□□□□□ -1.68
USA1	YML029W	TFC8	Q12308	588 aa		4.53	□□□□□ -1.68
USA1	YML029W	SRF1	Q12516	437 aa		4.53	□□□□□ -1.68
USA1	YML029W	GSC2	P40989	1895 aa		4.53	□□□□□ -1.68
USA1	YML029W	HVG1	P0CE11	249 aa		4.52	□□□□□ -1.69
USA1	YML029W	DIT2	P21595	489 aa		4.52	□□□□□ -1.69
USA1	YML029W	PRE8	P23639	250 aa		4.52	□□□□□ -1.69
USA1	YML029W	ADP1	P25371	1049 aa		4.52	□□□□□ -1.69
USA1	YML029W	ASF1	P32447	279 aa		4.52	□□□□□ -1.69
USA1	YML029W	SIS2	P36024	562 aa		4.52	□□□□□ -1.69
USA1	YML029W	YIR042C	P40586	236 aa		4.52	□□□□□ -1.69
USA1	YML029W	KEL3	Q08979	651 aa	Predicted RBP	4.52	□□□□□ -1.69
USA1	YML029W	PMA1	P05030	918 aa	Known RBP	4.52	□□□□□ -1.69
USA1	YML029W	HXT13	P39924	564 aa		4.52	□□□□□ -1.69
USA1	YML029W	GSM1	P42950	618 aa		4.52	□□□□□ -1.69
USA1	YML029W	NET1	P47035	1189 aa		4.52	□□□□□ -1.69
USA1	YML029W	HXT17	P53631	564 aa		4.52	□□□□□ -1.69
USA1	YML029W	TUS1	Q06412	1307 aa		4.52	□□□□□ -1.69
USA1	YML029W	SRM1	P21827	482 aa		4.51	□□□□□ -1.69
USA1	YML029W	VAB2	P40003	282 aa		4.51	□□□□□ -1.69
USA1	YML029W	LYS14	P40971	790 aa		4.51	□□□□□ -1.69
USA1	YML029W	PSK2	Q08217	1101 aa		4.51	□□□□□ -1.69
USA1	YML029W	PPM2	Q08282	695 aa		4.51	□□□□□ -1.69
USA1	YML029W	MYO3	P36006	1272 aa		4.51	□□□□□ -1.69
USA1	YML029W	TIF4631	P39935	952 aa	Known RBP	4.51	□□□□□ -1.69
USA1	YML029W	VPS4	P52917	437 aa		4.51	□□□□□ -1.69
USA1	YML029W	RNR2	P09938	399 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	COQ1	P18900	473 aa		4.5	□□□□□ -1.69
USA1	YML029W	RPT3	P33298	428 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	OCT1	P35999	772 aa		4.5	□□□□□ -1.69
USA1	YML029W	YKR018C	P36114	725 aa		4.5	□□□□□ -1.69
USA1	YML029W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
USA1	YML029W	YBL028C	P38202	106 aa		4.5	□□□□□ -1.69
USA1	YML029W	UBP10	P53874	792 aa	Predicted RBP	4.5	□□□□□ -1.69
USA1	YML029W	MRD1	Q06106	887 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	GIN4	Q12263	1142 aa		4.5	□□□□□ -1.69
USA1	YML029W	PEP3	P27801	918 aa		4.5	□□□□□ -1.69
USA1	YML029W	STV1	P37296	890 aa		4.5	□□□□□ -1.69
USA1	YML029W	TOM71	P38825	639 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	KEL1	P38853	1164 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	YMR147W	P40218	223 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	TY3A-G	Q12173	290 aa		4.5	□□□□□ -1.69
USA1	YML029W	TIF6	Q12522	245 aa	Known RBP	4.5	□□□□□ -1.69
USA1	YML029W	TY3A-I	Q99219	290 aa		4.5	□□□□□ -1.69
USA1	YML029W	ETP1	P38748	585 aa	Known RBP	4.49	□□□□□ -1.69
USA1	YML029W	NUP42	P49686	430 aa	Known RBP	4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms