RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C SPO22P40511 975 aa12.2□□□□□ -0.46
SHM2YLR058C AIM7Q12156 149 aa12.2□□□□□ -0.46
SHM2YLR058C RNR2P09938 399 aaKnown RBP12.19□□□□□ -0.46
SHM2YLR058C IMP2'P32351 346 aa12.19□□□□□ -0.46
SHM2YLR058C CRG1P38892 291 aaRIP-Chip data12.19□□□□□ -0.46not detected
SHM2YLR058C EMP47P43555 445 aa12.19□□□□□ -0.46
SHM2YLR058C RPS15Q01855 142 aaKnown RBP12.19□□□□□ -0.46
SHM2YLR058C PUS5Q06244 254 aa12.19□□□□□ -0.46
SHM2YLR058C SPN1Q06505 410 aaPredicted RBP12.19□□□□□ -0.46
SHM2YLR058C YPL260WQ08977 551 aa12.19□□□□□ -0.46
SHM2YLR058C KEL3Q08979 651 aaPredicted RBP12.19□□□□□ -0.46
SHM2YLR058C GSC2P40989 1895 aa12.18□□□□□ -0.46
SHM2YLR058C PEP3P27801 918 aa12.18□□□□□ -0.46
SHM2YLR058C OPY1P38271 328 aa12.18□□□□□ -0.46
SHM2YLR058C UFD2P54860 961 aa12.18□□□□□ -0.46
SHM2YLR058C MRD1Q06106 887 aaKnown RBP12.18□□□□□ -0.46
SHM2YLR058C CBP1P07252 654 aa12.17□□□□□ -0.46
SHM2YLR058C PCL8Q08966 492 aa12.17□□□□□ -0.46
SHM2YLR058C PCT1P13259 424 aa12.16□□□□□ -0.46
SHM2YLR058C RER2P35196 286 aa12.16□□□□□ -0.46
SHM2YLR058C SRS2P12954 1174 aa12.15□□□□□ -0.46
SHM2YLR058C VID27P40157 782 aa12.15□□□□□ -0.46
SHM2YLR058C AAD16Q02895 342 aa12.15□□□□□ -0.46
SHM2YLR058C ESF1Q06344 628 aaKnown RBP12.15□□□□□ -0.46
SHM2YLR058C RAD61Q99359 647 aa12.15□□□□□ -0.46
SHM2YLR058C VID28P40547 921 aa12.14□□□□□ -0.47
SHM2YLR058C MSH4P40965 878 aaPredicted RBP12.14□□□□□ -0.47
SHM2YLR058C ADP1P25371 1049 aa12.13□□□□□ -0.47
SHM2YLR058C MYO3P36006 1272 aa12.13□□□□□ -0.47
SHM2YLR058C HDA1P53973 706 aa12.13□□□□□ -0.47
SHM2YLR058C ANP1P32629 500 aa12.12□□□□□ -0.47
SHM2YLR058C ECM23Q02710 187 aa12.12□□□□□ -0.47
SHM2YLR058C EST2Q06163 884 aa12.12□□□□□ -0.47
SHM2YLR058C RAD53P22216 821 aa12.11□□□□□ -0.47
SHM2YLR058C KEL1P38853 1164 aaKnown RBP12.11□□□□□ -0.47
SHM2YLR058C NIT1P40447 199 aa12.11□□□□□ -0.47
SHM2YLR058C PTK2P47116 818 aaKnown RBP12.11□□□□□ -0.47
SHM2YLR058C TSR3Q12094 313 aaKnown RBP12.11□□□□□ -0.47
SHM2YLR058C PMA1P05030 918 aaKnown RBP12.11□□□□□ -0.47
SHM2YLR058C PRO3P32263 286 aaKnown RBP12.11□□□□□ -0.47
SHM2YLR058C YBL028CP38202 106 aa12.11□□□□□ -0.47
SHM2YLR058C ARP5P53946 755 aa12.11□□□□□ -0.47
SHM2YLR058C YDL124WQ07551 312 aaKnown RBP12.11□□□□□ -0.47
SHM2YLR058C KIN1P13185 1064 aa12.1□□□□□ -0.47
SHM2YLR058C PRE8P23639 250 aa12.1□□□□□ -0.47
SHM2YLR058C RIT1P23796 513 aa12.1□□□□□ -0.47
SHM2YLR058C FBP26P32604 452 aa12.1□□□□□ -0.47
SHM2YLR058C PEA2P40091 420 aa12.1□□□□□ -0.47
SHM2YLR058C VPS20Q04272 221 aa12.1□□□□□ -0.47
SHM2YLR058C SRM1P21827 482 aa12.09□□□□□ -0.47
SHM2YLR058C PEX21P50091 288 aa12.09□□□□□ -0.47
SHM2YLR058C TFC6Q06339 672 aa12.09□□□□□ -0.47
SHM2YLR058C MPH3P0CE00 602 aa12.08□□□□□ -0.48
SHM2YLR058C MATALPHA2P0CY08 210 aa12.08□□□□□ -0.48
SHM2YLR058C HMLALPHA2P0CY09 210 aa12.08□□□□□ -0.48
SHM2YLR058C VHR2P40041 505 aa12.08□□□□□ -0.48
SHM2YLR058C NPA3P47122 385 aa12.08□□□□□ -0.48
SHM2YLR058C CSR2Q12734 1121 aa12.08□□□□□ -0.48
SHM2YLR058C SSA4P22202 642 aaKnown RBP12.07□□□□□ -0.48
SHM2YLR058C SIS2P36024 562 aa12.07□□□□□ -0.48
SHM2YLR058C VPS8P39702 1274 aa12.07□□□□□ -0.48
SHM2YLR058C YKE2P52553 114 aa12.07□□□□□ -0.48
SHM2YLR058C TUB2P02557 457 aaKnown RBP12.06□□□□□ -0.48
SHM2YLR058C CTF18P49956 741 aa12.06□□□□□ -0.48
SHM2YLR058C CWC15Q03772 175 aaKnown RBP12.06□□□□□ -0.48
SHM2YLR058C SKG3Q06315 1026 aa12.06□□□□□ -0.48
SHM2YLR058C RPL19AP0CX82 189 aaKnown RBP12.05□□□□□ -0.48
SHM2YLR058C RPL19BP0CX83 189 aaPredicted RBP12.05□□□□□ -0.48
SHM2YLR058C GAL2P13181 574 aa12.05□□□□□ -0.48
SHM2YLR058C MAK31P23059 88 aa12.05□□□□□ -0.48
SHM2YLR058C CHS3P29465 1165 aa12.05□□□□□ -0.48
SHM2YLR058C CST26P38226 397 aa12.05□□□□□ -0.48
SHM2YLR058C CSM2P40465 213 aa12.05□□□□□ -0.48
SHM2YLR058C SNU71P53207 620 aaKnown RBP12.05□□□□□ -0.48
SHM2YLR058C MYO5Q04439 1219 aaKnown RBP12.05□□□□□ -0.48
SHM2YLR058C ACE2P21192 770 aa12.03□□□□□ -0.48
SHM2YLR058C IME2P32581 645 aa12.03□□□□□ -0.48
SHM2YLR058C TPS3P38426 1054 aaKnown RBP12.03□□□□□ -0.48
SHM2YLR058C YHL017WP38745 532 aa12.03□□□□□ -0.48
SHM2YLR058C AKR1P39010 764 aa12.03□□□□□ -0.48
SHM2YLR058C EPL1P43572 832 aa12.03□□□□□ -0.48
SHM2YLR058C RPT6Q01939 405 aaKnown RBP12.03□□□□□ -0.48
SHM2YLR058C PFK2P16862 959 aaKnown RBP RIP-Chip data12.03□□□□□ -0.48not detected
SHM2YLR058C SPT21P35209 758 aa12.03□□□□□ -0.48
SHM2YLR058C ALG2P43636 503 aa12.03□□□□□ -0.48
SHM2YLR058C ENT3P47160 408 aa12.03□□□□□ -0.48
SHM2YLR058C YLR407WQ06070 228 aa12.03□□□□□ -0.48
SHM2YLR058C PSK2Q08217 1101 aa12.03□□□□□ -0.48
SHM2YLR058C LAP2Q10740 671 aa12.03□□□□□ -0.48
SHM2YLR058C LSP1Q12230 341 aaKnown RBP12.03□□□□□ -0.48
SHM2YLR058C PNT1P38969 423 aa12.02□□□□□ -0.49
SHM2YLR058C YIL089WP40500 205 aa12.02□□□□□ -0.49
SHM2YLR058C UBP10P53874 792 aaPredicted RBP12.02□□□□□ -0.49
SHM2YLR058C YOR111WQ99210 232 aa12.02□□□□□ -0.49
SHM2YLR058C TUS1Q06412 1307 aa12.01□□□□□ -0.49
SHM2YLR058C RPL8BP29453 256 aaKnown RBP12.01□□□□□ -0.49
SHM2YLR058C MAL31P38156 614 aa12.01□□□□□ -0.49
SHM2YLR058C ISW2Q08773 1120 aa12.01□□□□□ -0.49
SHM2YLR058C TOM1Q03280 3268 aa12□□□□□ -0.49
SHM2YLR058C VPS24P36095 224 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms