RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP11	YKR098C	YIL165C	P40446	119 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	YJL049W	P47048	450 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	YJR098C	P47139	656 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	ITC1	P53125	1264 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	ULP1	Q02724	621 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	CDC34	P14682	295 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	KAR2	P16474	682 aa	Known RBP	3.19	□□□□□ -1.9
UBP11	YKR098C	NMD2	P38798	1089 aa	Known RBP	3.19	□□□□□ -1.9
UBP11	YKR098C	YJR115W	P47152	169 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	NUT1	P53114	1132 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	CWC24	P53769	259 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	YAF9	P53930	226 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	MSH6	Q03834	1242 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	SRF1	Q12516	437 aa		3.19	□□□□□ -1.9
UBP11	YKR098C	PYC2	P32327	1180 aa	Known RBP	3.18	□□□□□ -1.9
UBP11	YKR098C	DUT1	P33317	147 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	TAT2	P38967	592 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	PIC2	P40035	300 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	NUP85	P46673	744 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	FAA4	P47912	694 aa	Known RBP	3.18	□□□□□ -1.9
UBP11	YKR098C	MON1	P53129	644 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	RNH70	P53331	553 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	ADI1	Q03677	179 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	NSE3	Q05541	303 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	RGP1	P16664	663 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	APM2	P38700	605 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	RVS167	P39743	482 aa	Known RBP	3.18	□□□□□ -1.9
UBP11	YKR098C	YGR053C	P53234	283 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	GDE1	Q02979	1223 aa		3.18	□□□□□ -1.9
UBP11	YKR098C	CIT2	P08679	460 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	GRX1	P25373	110 aa	Known RBP	3.17	□□□□□ -1.9
UBP11	YKR098C	YKL091C	P33324	310 aa	Known RBP	3.17	□□□□□ -1.9
UBP11	YKR098C	ECM2	P38241	364 aa	Known RBP	3.17	□□□□□ -1.9
UBP11	YKR098C	SAP155	P43612	1002 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	UBP15	P50101	1230 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	LSC2	P53312	427 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	YNR040W	P53736	256 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	RPN4	Q03465	531 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	GCR1	P07261	785 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
UBP11	YKR098C	BUD6	P41697	788 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	YPL062W	Q02781	134 aa		3.17	□□□□□ -1.9
UBP11	YKR098C	BDF2	Q07442	638 aa		3.16	□□□□□ -1.9
UBP11	YKR098C	CDC53	Q12018	815 aa	Known RBP	3.16	□□□□□ -1.9
UBP11	YKR098C	TCB1	Q12466	1186 aa		3.16	□□□□□ -1.9
UBP11	YKR098C	RIM11	P38615	370 aa		3.15	□□□□□ -1.9
UBP11	YKR098C	YER156C	P40093	338 aa	Known RBP	3.15	□□□□□ -1.9
UBP11	YKR098C	PMT7	Q06644	662 aa		3.15	□□□□□ -1.9
UBP11	YKR098C	OPI10	Q08202	246 aa		3.15	□□□□□ -1.9
UBP11	YKR098C	RTT10	Q08924	1013 aa		3.15	□□□□□ -1.9
UBP11	YKR098C	PRI2	P20457	528 aa		3.15	□□□□□ -1.91
UBP11	YKR098C	PRP5	P21372	849 aa	Predicted RBP	3.15	□□□□□ -1.91
UBP11	YKR098C	NPR1	P22211	790 aa		3.15	□□□□□ -1.91
UBP11	YKR098C	PPG1	P32838	368 aa		3.15	□□□□□ -1.91
UBP11	YKR098C	NCL1	P38205	684 aa	Known RBP	3.15	□□□□□ -1.91
UBP11	YKR098C	OSW7	P43611	510 aa		3.15	□□□□□ -1.91
UBP11	YKR098C	CMR1	Q12510	522 aa	Known RBP	3.15	□□□□□ -1.91
UBP11	YKR098C	CDC19	P00549	500 aa	Known RBP	3.14	□□□□□ -1.91
UBP11	YKR098C	TRK1	P12685	1235 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	YKL069W	P36088	180 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	MRPL16	P38064	232 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
UBP11	YKR098C	SPF1	P39986	1215 aa	Known RBP	3.14	□□□□□ -1.91
UBP11	YKR098C	XKS1	P42826	600 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	GNP1	P48813	663 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	PPT1	P53043	513 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	NOG1	Q02892	647 aa	Known RBP	3.14	□□□□□ -1.91
UBP11	YKR098C	HEM13	P11353	328 aa	Known RBP	3.14	□□□□□ -1.91
UBP11	YKR098C	FUS1	P11710	512 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	IDI1	P15496	288 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	SQT1	P35184	431 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	RSM26	P47141	266 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	HUL5	P53119	910 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	YGL140C	P53120	1219 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	ALG12	P53730	551 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	FAR11	P53917	953 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	UBP2	Q01476	1272 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	EEB1	Q02891	456 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	TDA5	Q06417	326 aa	Known RBP	3.14	□□□□□ -1.91
UBP11	YKR098C	MRL1	Q06815	381 aa		3.14	□□□□□ -1.91
UBP11	YKR098C	SEC23	P15303	768 aa	Known RBP	3.13	□□□□□ -1.91
UBP11	YKR098C	RRP14	P36080	434 aa	Known RBP	3.13	□□□□□ -1.91
UBP11	YKR098C	PEX28	P38848	579 aa		3.13	□□□□□ -1.91
UBP11	YKR098C	TMA46	Q12000	345 aa	Known RBP	3.13	□□□□□ -1.91
UBP11	YKR098C	FAL1	Q12099	399 aa	Known RBP	3.13	□□□□□ -1.91
UBP11	YKR098C	YOR131C	Q12486	218 aa		3.13	□□□□□ -1.91
UBP11	YKR098C	RPP1A	P05318	106 aa	Predicted RBP	3.12	□□□□□ -1.91
UBP11	YKR098C	HVG1	P0CE11	249 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	RAD4	P14736	754 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	MSH3	P25336	1018 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	HXT13	P39924	564 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	HXT17	P53631	564 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	KRE33	P53914	1056 aa	Known RBP	3.12	□□□□□ -1.91
UBP11	YKR098C	HXT15	P54854	567 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	PEX13	P80667	386 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	NAN1	Q02931	896 aa	Known RBP	3.12	□□□□□ -1.91
UBP11	YKR098C	HDA2	Q06629	674 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	PPM2	Q08282	695 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	GLO4	Q12320	285 aa		3.12	□□□□□ -1.91
UBP11	YKR098C	CCP1	P00431	361 aa		3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 78.5 ms