RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C AIM7Q12156 149 aa6.23□□□□□ -1.41
VPS1YKR001C ERP4Q12450 207 aa6.23□□□□□ -1.41
VPS1YKR001C GAP1P19145 602 aaPredicted RBP6.23□□□□□ -1.41
VPS1YKR001C PWP2P25635 923 aaKnown RBP6.23□□□□□ -1.41
VPS1YKR001C NFU1P32860 256 aa6.23□□□□□ -1.41
VPS1YKR001C HXT5P38695 592 aa6.23□□□□□ -1.41
VPS1YKR001C YCK3P39962 524 aa6.23□□□□□ -1.41
VPS1YKR001C IES1P43579 692 aa6.23□□□□□ -1.41
VPS1YKR001C BFA1P47113 574 aa6.23□□□□□ -1.41
VPS1YKR001C CCM1P48237 864 aaPredicted RBP6.23□□□□□ -1.41
VPS1YKR001C YNL247WP53852 767 aaKnown RBP6.23□□□□□ -1.41
VPS1YKR001C UBP16Q02863 499 aa6.23□□□□□ -1.41
VPS1YKR001C TMA64Q04600 565 aaKnown RBP6.23□□□□□ -1.41
VPS1YKR001C SAC3P46674 1301 aa6.22□□□□□ -1.41
VPS1YKR001C LAM1P38851 1228 aa6.22□□□□□ -1.41
VPS1YKR001C DPL1Q05567 589 aa6.22□□□□□ -1.41
VPS1YKR001C NDL1Q06568 189 aa6.22□□□□□ -1.41
VPS1YKR001C APC5Q08683 685 aa6.22□□□□□ -1.41
VPS1YKR001C CMP2P14747 604 aa6.22□□□□□ -1.41
VPS1YKR001C GCD6P32501 712 aaKnown RBP6.22□□□□□ -1.41
VPS1YKR001C GYP7P48365 746 aa6.22□□□□□ -1.41
VPS1YKR001C YNL058CP53947 316 aa6.22□□□□□ -1.41
VPS1YKR001C ARR1Q06596 294 aa6.22□□□□□ -1.41
VPS1YKR001C CDC45Q08032 650 aa6.22□□□□□ -1.41
VPS1YKR001C CDC31P06704 161 aaKnown RBP6.21□□□□□ -1.42
VPS1YKR001C EMP47P43555 445 aa6.21□□□□□ -1.42
VPS1YKR001C YAF9P53930 226 aa6.21□□□□□ -1.42
VPS1YKR001C SAS4Q04003 481 aa6.21□□□□□ -1.42
VPS1YKR001C AVO1Q08236 1176 aa6.21□□□□□ -1.42
VPS1YKR001C RUD3Q12234 484 aaKnown RBP6.21□□□□□ -1.42
VPS1YKR001C SNU66Q12420 587 aaPredicted RBP6.21□□□□□ -1.42
VPS1YKR001C SSK22P25390 1331 aaPredicted RBP6.21□□□□□ -1.42
VPS1YKR001C JJJ1P53863 590 aa6.2□□□□□ -1.42
VPS1YKR001C CWC15Q03772 175 aaKnown RBP6.2□□□□□ -1.42
VPS1YKR001C ARG8P18544 423 aa6.2□□□□□ -1.42
VPS1YKR001C FRD1P32614 470 aaKnown RBP6.2□□□□□ -1.42
VPS1YKR001C PEX5P35056 612 aa6.2□□□□□ -1.42
VPS1YKR001C NTH2P35172 780 aa6.2□□□□□ -1.42
VPS1YKR001C OCA5P38738 679 aa6.2□□□□□ -1.42
VPS1YKR001C MEP1P40260 492 aa6.2□□□□□ -1.42
VPS1YKR001C MGA2P40578 1113 aa6.2□□□□□ -1.42
VPS1YKR001C SYF1Q04048 859 aaPredicted RBP6.2□□□□□ -1.42
VPS1YKR001C ORM2Q06144 216 aa6.2□□□□□ -1.42
VPS1YKR001C APC2Q12440 853 aa6.2□□□□□ -1.42
VPS1YKR001C GSC2P40989 1895 aa6.2□□□□□ -1.42
VPS1YKR001C KDX1P36005 433 aa6.19□□□□□ -1.42
VPS1YKR001C MAL31P38156 614 aa6.19□□□□□ -1.42
VPS1YKR001C ELA1P53861 379 aaPredicted RBP6.19□□□□□ -1.42
VPS1YKR001C TRM44Q02648 567 aaKnown RBP6.19□□□□□ -1.42
VPS1YKR001C COG8Q04632 607 aa6.19□□□□□ -1.42
VPS1YKR001C PIB1Q06651 286 aa6.19□□□□□ -1.42
VPS1YKR001C KEX2P13134 814 aa6.19□□□□□ -1.42
VPS1YKR001C PSO2P30620 661 aa6.19□□□□□ -1.42
VPS1YKR001C SWI3P32591 825 aa6.19□□□□□ -1.42
VPS1YKR001C YKR023WP36119 530 aaKnown RBP6.19□□□□□ -1.42
VPS1YKR001C MED8P38304 223 aa6.19□□□□□ -1.42
VPS1YKR001C BSD2P38356 321 aa6.19□□□□□ -1.42
VPS1YKR001C TPM2P40414 161 aa6.19□□□□□ -1.42
VPS1YKR001C BDP1P46678 594 aa6.19□□□□□ -1.42
VPS1YKR001C KEL2P50090 882 aa6.19□□□□□ -1.42
VPS1YKR001C NCS6P53088 359 aa6.19□□□□□ -1.42
VPS1YKR001C YGR117CP53270 476 aa6.19□□□□□ -1.42
VPS1YKR001C RRP9Q06506 573 aaKnown RBP6.19□□□□□ -1.42
VPS1YKR001C DCD1P06773 312 aa6.18□□□□□ -1.42
VPS1YKR001C HVG1P0CE11 249 aa6.18□□□□□ -1.42
VPS1YKR001C UGA3P26370 528 aa6.18□□□□□ -1.42
VPS1YKR001C CLB5P30283 435 aa6.18□□□□□ -1.42
VPS1YKR001C ESF2P53743 316 aaKnown RBP6.18□□□□□ -1.42
VPS1YKR001C PCL8Q08966 492 aa6.18□□□□□ -1.42
VPS1YKR001C HAT1Q12341 374 aa6.18□□□□□ -1.42
VPS1YKR001C SWI6P09959 803 aa6.17□□□□□ -1.42
VPS1YKR001C MPH3P0CE00 602 aa6.17□□□□□ -1.42
VPS1YKR001C SEC23P15303 768 aaKnown RBP6.17□□□□□ -1.42
VPS1YKR001C KAR3P17119 729 aa6.17□□□□□ -1.42
VPS1YKR001C SNF7P39929 240 aaKnown RBP6.17□□□□□ -1.42
VPS1YKR001C GPI8P49018 411 aa6.17□□□□□ -1.42
VPS1YKR001C HST2P53686 357 aa6.17□□□□□ -1.42
VPS1YKR001C PDS5Q04264 1277 aa6.17□□□□□ -1.42
VPS1YKR001C BRF1P29056 596 aa6.17□□□□□ -1.42
VPS1YKR001C ARC19P33204 171 aaKnown RBP6.17□□□□□ -1.42
VPS1YKR001C NPL4P33755 580 aa6.17□□□□□ -1.42
VPS1YKR001C DSF2P38213 736 aa6.17□□□□□ -1.42
VPS1YKR001C YHR218WP38899 603 aa6.17□□□□□ -1.42
VPS1YKR001C TIM11P81449 96 aaPredicted RBP6.17□□□□□ -1.42
VPS1YKR001C COG4Q06096 861 aa6.17□□□□□ -1.42
VPS1YKR001C ATG26Q06321 1198 aa6.17□□□□□ -1.42
VPS1YKR001C SSF2Q12153 453 aaPredicted RBP6.17□□□□□ -1.42
VPS1YKR001C RPL17BP46990 184 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C REX2P54964 269 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C ENT2Q05785 613 aa6.16□□□□□ -1.42
VPS1YKR001C UTP4Q06679 776 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C TSR3Q12094 313 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C LSO1Q3E827 93 aa6.16□□□□□ -1.42
VPS1YKR001C NOP14Q99207 810 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C THR4P16120 514 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C ECM1P39715 212 aa6.16□□□□□ -1.42
VPS1YKR001C HUL5P53119 910 aa6.16□□□□□ -1.42
VPS1YKR001C MDM1Q01846 1127 aa6.16□□□□□ -1.42
VPS1YKR001C SRP1Q02821 542 aaKnown RBP6.16□□□□□ -1.42
VPS1YKR001C VPS30Q02948 557 aa6.16□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms