RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	BIO5	P53744	561 aa	Known RBP	4.35	□□□□□ -1.71
SHE2	YKL130C	CYC7	P00045	113 aa		4.34	□□□□□ -1.71
SHE2	YKL130C	LEM3	P42838	414 aa		4.34	□□□□□ -1.71
SHE2	YKL130C	CTH1	P47976	325 aa		4.34	□□□□□ -1.71
SHE2	YKL130C	SUT1	P53032	299 aa	Known RBP	4.34	□□□□□ -1.71
SHE2	YKL130C	BRE4	Q07660	1125 aa		4.34	□□□□□ -1.71
SHE2	YKL130C	RRN6	P32786	894 aa		4.33	□□□□□ -1.72
SHE2	YKL130C	MAE1	P36013	669 aa	Known RBP	4.33	□□□□□ -1.72
SHE2	YKL130C	TFA2	P36145	328 aa		4.33	□□□□□ -1.72
SHE2	YKL130C	SPO74	P45819	413 aa		4.33	□□□□□ -1.72
SHE2	YKL130C	YML083C	Q04526	418 aa		4.33	□□□□□ -1.72
SHE2	YKL130C	TAF7	Q05021	590 aa		4.33	□□□□□ -1.72
SHE2	YKL130C	SOG2	Q08817	791 aa		4.33	□□□□□ -1.72
SHE2	YKL130C	FUS1	P11710	512 aa		4.32	□□□□□ -1.72
SHE2	YKL130C	SSA4	P22202	642 aa	Known RBP	4.32	□□□□□ -1.72
SHE2	YKL130C	NEO1	P40527	1151 aa		4.32	□□□□□ -1.72
SHE2	YKL130C	ALD3	P54114	506 aa		4.32	□□□□□ -1.72
SHE2	YKL130C	CWC15	Q03772	175 aa	Known RBP	4.32	□□□□□ -1.72
SHE2	YKL130C	SPO71	Q03868	1245 aa		4.32	□□□□□ -1.72
SHE2	YKL130C	PNP1	Q05788	311 aa		4.32	□□□□□ -1.72
SHE2	YKL130C	POL5	P39985	1022 aa	Known RBP	4.31	□□□□□ -1.72
SHE2	YKL130C	RGD2	P43556	714 aa		4.31	□□□□□ -1.72
SHE2	YKL130C	MAG2	Q06436	670 aa	Known RBP	4.31	□□□□□ -1.72
SHE2	YKL130C	AOS1	Q06624	347 aa		4.31	□□□□□ -1.72
SHE2	YKL130C	ELG1	Q12050	791 aa		4.31	□□□□□ -1.72
SHE2	YKL130C	ELM1	P32801	640 aa		4.3	□□□□□ -1.72
SHE2	YKL130C	NCE103	P53615	221 aa		4.3	□□□□□ -1.72
SHE2	YKL130C	MSB1	P21339	1137 aa	Known RBP	4.29	□□□□□ -1.72
SHE2	YKL130C	RAD55	P38953	406 aa		4.29	□□□□□ -1.72
SHE2	YKL130C	NTA1	P40354	457 aa		4.29	□□□□□ -1.72
SHE2	YKL130C	YJR124C	P47159	448 aa		4.29	□□□□□ -1.72
SHE2	YKL130C	NOB1	Q08444	459 aa	Known RBP	4.29	□□□□□ -1.72
SHE2	YKL130C	ERS1	P17261	260 aa		4.28	□□□□□ -1.72
SHE2	YKL130C	RPB10	P22139	70 aa		4.28	□□□□□ -1.72
SHE2	YKL130C	KTR2	P33550	425 aa		4.28	□□□□□ -1.72
SHE2	YKL130C	BOI1	P38041	980 aa	Known RBP	4.28	□□□□□ -1.72
SHE2	YKL130C	KIP3	P53086	805 aa	Known RBP	4.28	□□□□□ -1.72
SHE2	YKL130C	YNR065C	P53751	1116 aa		4.28	□□□□□ -1.72
SHE2	YKL130C	APC11	Q12157	165 aa		4.28	□□□□□ -1.72
SHE2	YKL130C	TIF6	Q12522	245 aa	Known RBP	4.28	□□□□□ -1.72
SHE2	YKL130C	SMC1	P32908	1225 aa		4.27	□□□□□ -1.73
SHE2	YKL130C	IRS4	P36115	615 aa	Known RBP	4.27	□□□□□ -1.73
SHE2	YKL130C	GIC2	Q06648	383 aa		4.27	□□□□□ -1.73
SHE2	YKL130C	FUR4	P05316	633 aa	Known RBP	4.26	□□□□□ -1.73
SHE2	YKL130C	PSY2	P40164	858 aa		4.26	□□□□□ -1.73
SHE2	YKL130C	FAR11	P53917	953 aa		4.26	□□□□□ -1.73
SHE2	YKL130C	SDH1	Q00711	640 aa		4.26	□□□□□ -1.73
SHE2	YKL130C	HAS1	Q03532	505 aa	Known RBP	4.26	□□□□□ -1.73
SHE2	YKL130C	YMR074C	Q04773	145 aa		4.26	□□□□□ -1.73
SHE2	YKL130C	FET4	P40988	552 aa		4.25	□□□□□ -1.73
SHE2	YKL130C	GLO4	Q12320	285 aa		4.25	□□□□□ -1.73
SHE2	YKL130C	PYC2	P32327	1180 aa	Known RBP	4.24	□□□□□ -1.73
SHE2	YKL130C	LSO1	Q3E827	93 aa		4.24	□□□□□ -1.73
SHE2	YKL130C	HVG1	P0CE11	249 aa		4.23	□□□□□ -1.73
SHE2	YKL130C	NSI1	Q12457	570 aa		4.23	□□□□□ -1.73
SHE2	YKL130C	GCD1	P09032	578 aa	Predicted RBP	4.22	□□□□□ -1.73
SHE2	YKL130C	RNQ1	P25367	405 aa		4.22	□□□□□ -1.73
SHE2	YKL130C	SEA4	P38164	1038 aa		4.22	□□□□□ -1.73
SHE2	YKL130C	MMM1	P41800	426 aa		4.22	□□□□□ -1.73
SHE2	YKL130C	YOR223W	Q12015	292 aa		4.22	□□□□□ -1.73
SHE2	YKL130C	SEG2	P34250	1132 aa		4.21	□□□□□ -1.74
SHE2	YKL130C	WHI3	P34761	661 aa	Known RBP	4.21	□□□□□ -1.74
SHE2	YKL130C	GPT2	P36148	743 aa		4.21	□□□□□ -1.74
SHE2	YKL130C	POL12	P38121	705 aa	Predicted RBP	4.21	□□□□□ -1.74
SHE2	YKL130C	BOL3	P39724	118 aa		4.21	□□□□□ -1.74
SHE2	YKL130C	YLL054C	Q12244	843 aa		4.21	□□□□□ -1.74
SHE2	YKL130C	LRG1	P35688	1017 aa		4.2	□□□□□ -1.74
SHE2	YKL130C	UBP5	P39944	805 aa		4.2	□□□□□ -1.74
SHE2	YKL130C	CIT3	P43635	486 aa		4.2	□□□□□ -1.74
SHE2	YKL130C	ECM2	P38241	364 aa	Known RBP	4.19	□□□□□ -1.74
SHE2	YKL130C	DOT1	Q04089	582 aa	Known RBP	4.19	□□□□□ -1.74
SHE2	YKL130C	ECL1	P48235	211 aa		4.18	□□□□□ -1.74
SHE2	YKL130C	RCM1	P53972	490 aa		4.18	□□□□□ -1.74
SHE2	YKL130C	DFG16	Q99234	619 aa		4.18	□□□□□ -1.74
SHE2	YKL130C	GLO3	P38682	493 aa	Known RBP	4.17	□□□□□ -1.74
SHE2	YKL130C	GCV1	P48015	400 aa		4.17	□□□□□ -1.74
SHE2	YKL130C	CTR9	P89105	1077 aa		4.17	□□□□□ -1.74
SHE2	YKL130C	YOR059C	Q08448	450 aa	Known RBP	4.17	□□□□□ -1.74
SHE2	YKL130C	GAS1	P22146	559 aa	Known RBP	4.15	□□□□□ -1.75
SHE2	YKL130C	NPR1	P22211	790 aa		4.15	□□□□□ -1.75
SHE2	YKL130C	NIT1	P40447	199 aa		4.15	□□□□□ -1.75
SHE2	YKL130C	PRP43	P53131	767 aa	Known RBP	4.15	□□□□□ -1.75
SHE2	YKL130C	UFD2	P54860	961 aa		4.15	□□□□□ -1.75
SHE2	YKL130C	KAR5	Q04746	504 aa		4.15	□□□□□ -1.75
SHE2	YKL130C	SUB2	Q07478	446 aa	Known RBP	4.15	□□□□□ -1.75
SHE2	YKL130C	YIG1	Q08956	461 aa		4.15	□□□□□ -1.75
SHE2	YKL130C	COB	P00163	385 aa		4.14	□□□□□ -1.75
SHE2	YKL130C	HTS1	P07263	546 aa	Known RBP	4.14	□□□□□ -1.75
SHE2	YKL130C	RPS4A	P0CX35	261 aa	Known RBP	4.14	□□□□□ -1.75
SHE2	YKL130C	RPS4B	P0CX36	261 aa	Known RBP	4.14	□□□□□ -1.75
SHE2	YKL130C	HSP78	P33416	811 aa		4.14	□□□□□ -1.75
SHE2	YKL130C	QDR1	P40475	563 aa		4.14	□□□□□ -1.75
SHE2	YKL130C	RIM11	P38615	370 aa		4.13	□□□□□ -1.75
SHE2	YKL130C	YHL008C	P38750	627 aa		4.13	□□□□□ -1.75
SHE2	YKL130C	RPL34A	P87262	121 aa	Predicted RBP	4.13	□□□□□ -1.75
SHE2	YKL130C	MEC3	Q02574	474 aa		4.13	□□□□□ -1.75
SHE2	YKL130C	ALG6	Q12001	544 aa	Known RBP	4.13	□□□□□ -1.75
SHE2	YKL130C	CMR1	Q12510	522 aa	Known RBP	4.13	□□□□□ -1.75
SHE2	YKL130C	ADP1	P25371	1049 aa		4.12	□□□□□ -1.75
SHE2	YKL130C	REI1	P38344	393 aa	Predicted RBP	4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms