RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS54	YDR027C	REC8	Q12188	680 aa		3.24	□□□□□ -1.89
VPS54	YDR027C	NAM7	P30771	971 aa	Known RBP	3.23	□□□□□ -1.89
VPS54	YDR027C	BIO5	P53744	561 aa	Known RBP	3.23	□□□□□ -1.89
VPS54	YDR027C	SOG2	Q08817	791 aa		3.23	□□□□□ -1.89
VPS54	YDR027C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	3.23	□□□□□ -1.89	not detected
VPS54	YDR027C	MAE1	P36013	669 aa	Known RBP	3.23	□□□□□ -1.89
VPS54	YDR027C	SUT1	P53032	299 aa	Known RBP	3.23	□□□□□ -1.89
VPS54	YDR027C	ALD3	P54114	506 aa		3.22	□□□□□ -1.89
VPS54	YDR027C	CWC15	Q03772	175 aa	Known RBP	3.22	□□□□□ -1.89
VPS54	YDR027C	FUS1	P11710	512 aa		3.22	□□□□□ -1.89
VPS54	YDR027C	SPO71	Q03868	1245 aa		3.22	□□□□□ -1.89
VPS54	YDR027C	YML083C	Q04526	418 aa		3.22	□□□□□ -1.89
VPS54	YDR027C	PNP1	Q05788	311 aa		3.22	□□□□□ -1.89
VPS54	YDR027C	BRE4	Q07660	1125 aa		3.22	□□□□□ -1.89
VPS54	YDR027C	CYC7	P00045	113 aa		3.21	□□□□□ -1.9
VPS54	YDR027C	TFA2	P36145	328 aa		3.21	□□□□□ -1.9
VPS54	YDR027C	SPO74	P45819	413 aa		3.21	□□□□□ -1.9
VPS54	YDR027C	NTA1	P40354	457 aa		3.21	□□□□□ -1.9
VPS54	YDR027C	NEO1	P40527	1151 aa		3.21	□□□□□ -1.9
VPS54	YDR027C	ELG1	Q12050	791 aa		3.21	□□□□□ -1.9
VPS54	YDR027C	MSB1	P21339	1137 aa	Known RBP	3.2	□□□□□ -1.9
VPS54	YDR027C	RAD55	P38953	406 aa		3.2	□□□□□ -1.9
VPS54	YDR027C	POL5	P39985	1022 aa	Known RBP	3.2	□□□□□ -1.9
VPS54	YDR027C	RGD2	P43556	714 aa		3.2	□□□□□ -1.9
VPS54	YDR027C	CTH1	P47976	325 aa		3.2	□□□□□ -1.9
VPS54	YDR027C	SMC1	P32908	1225 aa		3.2	□□□□□ -1.9
VPS54	YDR027C	NOB1	Q08444	459 aa	Known RBP	3.19	□□□□□ -1.9
VPS54	YDR027C	APC11	Q12157	165 aa		3.19	□□□□□ -1.9
VPS54	YDR027C	NCE103	P53615	221 aa		3.19	□□□□□ -1.9
VPS54	YDR027C	MAG2	Q06436	670 aa	Known RBP	3.19	□□□□□ -1.9
VPS54	YDR027C	AOS1	Q06624	347 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	TIF6	Q12522	245 aa	Known RBP	3.18	□□□□□ -1.9
VPS54	YDR027C	FUR4	P05316	633 aa	Known RBP	3.18	□□□□□ -1.9
VPS54	YDR027C	RPB10	P22139	70 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	IRS4	P36115	615 aa	Known RBP	3.18	□□□□□ -1.9
VPS54	YDR027C	BOI1	P38041	980 aa	Known RBP	3.18	□□□□□ -1.9
VPS54	YDR027C	PSY2	P40164	858 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	YJR124C	P47159	448 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	YNR065C	P53751	1116 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	FAR11	P53917	953 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	GIC2	Q06648	383 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	LSO1	Q3E827	93 aa		3.18	□□□□□ -1.9
VPS54	YDR027C	FET4	P40988	552 aa		3.17	□□□□□ -1.9
VPS54	YDR027C	KIP3	P53086	805 aa	Known RBP	3.17	□□□□□ -1.9
VPS54	YDR027C	ERS1	P17261	260 aa		3.17	□□□□□ -1.9
VPS54	YDR027C	KTR2	P33550	425 aa		3.17	□□□□□ -1.9
VPS54	YDR027C	HAS1	Q03532	505 aa	Known RBP	3.17	□□□□□ -1.9
VPS54	YDR027C	YMR074C	Q04773	145 aa		3.17	□□□□□ -1.9
VPS54	YDR027C	GLO4	Q12320	285 aa		3.17	□□□□□ -1.9
VPS54	YDR027C	ELM1	P32801	640 aa		3.16	□□□□□ -1.9
VPS54	YDR027C	MON2	P48563	1636 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS54	YDR027C	NSI1	Q12457	570 aa		3.16	□□□□□ -1.9
VPS54	YDR027C	PYC2	P32327	1180 aa	Known RBP	3.16	□□□□□ -1.9
VPS54	YDR027C	YOR223W	Q12015	292 aa		3.15	□□□□□ -1.91
VPS54	YDR027C	SDH1	Q00711	640 aa		3.15	□□□□□ -1.91
VPS54	YDR027C	HVG1	P0CE11	249 aa		3.14	□□□□□ -1.91
VPS54	YDR027C	YLL054C	Q12244	843 aa		3.14	□□□□□ -1.91
VPS54	YDR027C	INO80	P53115	1489 aa		3.14	□□□□□ -1.91
VPS54	YDR027C	MMM1	P41800	426 aa		3.14	□□□□□ -1.91
VPS54	YDR027C	ECM2	P38241	364 aa	Known RBP	3.13	□□□□□ -1.91
VPS54	YDR027C	BOL3	P39724	118 aa		3.13	□□□□□ -1.91
VPS54	YDR027C	CIT3	P43635	486 aa		3.13	□□□□□ -1.91
VPS54	YDR027C	GCD1	P09032	578 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS54	YDR027C	WHI3	P34761	661 aa	Known RBP	3.12	□□□□□ -1.91
VPS54	YDR027C	GPT2	P36148	743 aa		3.12	□□□□□ -1.91
VPS54	YDR027C	POL12	P38121	705 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS54	YDR027C	UBP5	P39944	805 aa		3.12	□□□□□ -1.91
VPS54	YDR027C	DOT1	Q04089	582 aa	Known RBP	3.12	□□□□□ -1.91
VPS54	YDR027C	ECL1	P48235	211 aa		3.11	□□□□□ -1.91
VPS54	YDR027C	YOR059C	Q08448	450 aa	Known RBP	3.11	□□□□□ -1.91
VPS54	YDR027C	RNQ1	P25367	405 aa		3.11	□□□□□ -1.91
VPS54	YDR027C	SEG2	P34250	1132 aa		3.11	□□□□□ -1.91
VPS54	YDR027C	SEA4	P38164	1038 aa		3.11	□□□□□ -1.91
VPS54	YDR027C	GLO3	P38682	493 aa	Known RBP	3.11	□□□□□ -1.91
VPS54	YDR027C	UFD2	P54860	961 aa		3.11	□□□□□ -1.91
VPS54	YDR027C	LRG1	P35688	1017 aa		3.1	□□□□□ -1.91
VPS54	YDR027C	GCV1	P48015	400 aa		3.1	□□□□□ -1.91
VPS54	YDR027C	RCM1	P53972	490 aa		3.1	□□□□□ -1.91
VPS54	YDR027C	KAR5	Q04746	504 aa		3.1	□□□□□ -1.91
VPS54	YDR027C	SUB2	Q07478	446 aa	Known RBP	3.1	□□□□□ -1.91
VPS54	YDR027C	NIT1	P40447	199 aa		3.1	□□□□□ -1.91
VPS54	YDR027C	DFG16	Q99234	619 aa		3.1	□□□□□ -1.91
VPS54	YDR027C	RPL34A	P87262	121 aa	Predicted RBP	3.09	□□□□□ -1.91
VPS54	YDR027C	CTR9	P89105	1077 aa		3.09	□□□□□ -1.91
VPS54	YDR027C	YIG1	Q08956	461 aa		3.09	□□□□□ -1.91
VPS54	YDR027C	NPR1	P22211	790 aa		3.09	□□□□□ -1.91
VPS54	YDR027C	QDR1	P40475	563 aa		3.09	□□□□□ -1.91
VPS54	YDR027C	PRP43	P53131	767 aa	Known RBP	3.09	□□□□□ -1.91
VPS54	YDR027C	RSC4	Q02206	625 aa		3.09	□□□□□ -1.91
VPS54	YDR027C	HTS1	P07263	546 aa	Known RBP	3.08	□□□□□ -1.92
VPS54	YDR027C	RIM11	P38615	370 aa		3.08	□□□□□ -1.92
VPS54	YDR027C	UTP22	P53254	1237 aa	Predicted RBP	3.08	□□□□□ -1.92
VPS54	YDR027C	MEC3	Q02574	474 aa		3.08	□□□□□ -1.92
VPS54	YDR027C	CMR1	Q12510	522 aa	Known RBP	3.08	□□□□□ -1.92
VPS54	YDR027C	COB	P00163	385 aa		3.07	□□□□□ -1.92
VPS54	YDR027C	RPS4A	P0CX35	261 aa	Known RBP	3.07	□□□□□ -1.92
VPS54	YDR027C	RPS4B	P0CX36	261 aa	Known RBP	3.07	□□□□□ -1.92
VPS54	YDR027C	HSP78	P33416	811 aa		3.07	□□□□□ -1.92
VPS54	YDR027C	GAS1	P22146	559 aa	Known RBP	3.07	□□□□□ -1.92
VPS54	YDR027C	REI1	P38344	393 aa	Predicted RBP	3.07	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 50.9 ms