RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W MATALPHA2P0CY08 210 aa16.36■□□□□ 0.21
DEP1YAL013W HMLALPHA2P0CY09 210 aa16.36■□□□□ 0.21
DEP1YAL013W MSM1P22438 575 aa16.36■□□□□ 0.21
DEP1YAL013W MYO3P36006 1272 aa16.36■□□□□ 0.21
DEP1YAL013W UFD2P54860 961 aa16.36■□□□□ 0.21
DEP1YAL013W CRF1Q04930 467 aa16.36■□□□□ 0.21
DEP1YAL013W RPL19AP0CX82 189 aaKnown RBP16.35■□□□□ 0.21
DEP1YAL013W RPL19BP0CX83 189 aaPredicted RBP16.35■□□□□ 0.21
DEP1YAL013W SSA1P10591 642 aaKnown RBP16.35■□□□□ 0.21
DEP1YAL013W UTP7P40055 554 aaKnown RBP16.35■□□□□ 0.21
DEP1YAL013W YPL260WQ08977 551 aa16.35■□□□□ 0.21
DEP1YAL013W TSR3Q12094 313 aaKnown RBP16.35■□□□□ 0.21
DEP1YAL013W MTC3P53077 123 aa16.34■□□□□ 0.21
DEP1YAL013W BDH2P39713 417 aa16.33■□□□□ 0.2
DEP1YAL013W CTF18P49956 741 aa16.33■□□□□ 0.2
DEP1YAL013W SQS1P53866 767 aaKnown RBP16.33■□□□□ 0.2
DEP1YAL013W HDA1P53973 706 aa16.33■□□□□ 0.2
DEP1YAL013W HRQ1Q05549 1077 aa16.33■□□□□ 0.2
DEP1YAL013W YLR407WQ06070 228 aa16.33■□□□□ 0.2
DEP1YAL013W EST2Q06163 884 aa16.33■□□□□ 0.2
DEP1YAL013W ESF1Q06344 628 aaKnown RBP16.33■□□□□ 0.2
DEP1YAL013W RAD61Q99359 647 aa16.33■□□□□ 0.2
DEP1YAL013W ANP1P32629 500 aa16.32■□□□□ 0.2
DEP1YAL013W PSK2Q08217 1101 aa16.32■□□□□ 0.2
DEP1YAL013W YHL017WP38745 532 aa16.31■□□□□ 0.2
DEP1YAL013W DJP1P40564 432 aa16.31■□□□□ 0.2
DEP1YAL013W YKE2P52553 114 aa16.31■□□□□ 0.2
DEP1YAL013W ARP5P53946 755 aa16.31■□□□□ 0.2
DEP1YAL013W MRD1Q06106 887 aaKnown RBP16.31■□□□□ 0.2
DEP1YAL013W PCL8Q08966 492 aa16.31■□□□□ 0.2
DEP1YAL013W BIK1P11709 440 aa16.3■□□□□ 0.2
DEP1YAL013W GLC3P32775 704 aa16.3■□□□□ 0.2
DEP1YAL013W STV1P37296 890 aa16.3■□□□□ 0.2
DEP1YAL013W PTK2P47116 818 aaKnown RBP16.3■□□□□ 0.2
DEP1YAL013W EAF7P53911 425 aaKnown RBP16.3■□□□□ 0.2
DEP1YAL013W KEL3Q08979 651 aaPredicted RBP16.3■□□□□ 0.2
DEP1YAL013W YPL150WQ12152 901 aa16.3■□□□□ 0.2
DEP1YAL013W GAP1P19145 602 aaPredicted RBP16.29■□□□□ 0.2
DEP1YAL013W MSP1P28737 362 aa16.29■□□□□ 0.2
DEP1YAL013W TFC6Q06339 672 aa16.29■□□□□ 0.2
DEP1YAL013W MPH3P0CE00 602 aa16.28■□□□□ 0.2
DEP1YAL013W TTI1P36097 1038 aa16.28■□□□□ 0.2
DEP1YAL013W VID27P40157 782 aa16.28■□□□□ 0.2
DEP1YAL013W HYR1P40581 163 aaKnown RBP16.28■□□□□ 0.2
DEP1YAL013W MSH4P40965 878 aaPredicted RBP16.28■□□□□ 0.2
DEP1YAL013W HAP5Q02516 242 aa16.28■□□□□ 0.2
DEP1YAL013W TRM44Q02648 567 aaKnown RBP16.28■□□□□ 0.2
DEP1YAL013W ELG1Q12050 791 aa16.28■□□□□ 0.2
DEP1YAL013W VPS4P52917 437 aa16.27■□□□□ 0.2
DEP1YAL013W YGR117CP53270 476 aa16.27■□□□□ 0.2
DEP1YAL013W HST1P53685 503 aa16.27■□□□□ 0.2
DEP1YAL013W UBP10P53874 792 aaPredicted RBP16.27■□□□□ 0.2
DEP1YAL013W YLR278CQ05854 1341 aa16.26■□□□□ 0.19
DEP1YAL013W ROX1P25042 368 aa16.26■□□□□ 0.19
DEP1YAL013W SNF7P39929 240 aaKnown RBP16.26■□□□□ 0.19
DEP1YAL013W CPA2P03965 1118 aaKnown RBP16.25■□□□□ 0.19
DEP1YAL013W PRO3P32263 286 aaKnown RBP16.25■□□□□ 0.19
DEP1YAL013W TIM50Q02776 476 aa16.25■□□□□ 0.19
DEP1YAL013W MYO5Q04439 1219 aaKnown RBP16.25■□□□□ 0.19
DEP1YAL013W MAK31P23059 88 aa16.24■□□□□ 0.19
DEP1YAL013W PRX1P34227 261 aaKnown RBP16.24■□□□□ 0.19
DEP1YAL013W SLI15P38283 698 aa16.24■□□□□ 0.19
DEP1YAL013W FET4P40988 552 aa16.24■□□□□ 0.19
DEP1YAL013W AAD16Q02895 342 aa16.24■□□□□ 0.19
DEP1YAL013W ISW2Q08773 1120 aa16.24■□□□□ 0.19
DEP1YAL013W RIT1P23796 513 aa16.23■□□□□ 0.19
DEP1YAL013W SIS2P36024 562 aa16.23■□□□□ 0.19
DEP1YAL013W AKR1P39010 764 aa16.23■□□□□ 0.19
DEP1YAL013W CBP3P21560 335 aa16.22■□□□□ 0.19
DEP1YAL013W MBR1P23493 339 aa16.22■□□□□ 0.19
DEP1YAL013W PRE8P23639 250 aa16.22■□□□□ 0.19
DEP1YAL013W EPL1P43572 832 aa16.22■□□□□ 0.19
DEP1YAL013W SKG3Q06315 1026 aa16.22■□□□□ 0.19
DEP1YAL013W KIN1P13185 1064 aa16.21■□□□□ 0.19
DEP1YAL013W PFK2P16862 959 aaKnown RBP RIP-Chip data16.21■□□□□ 0.19not detected
DEP1YAL013W RTG2P32608 588 aaKnown RBP16.21■□□□□ 0.19
DEP1YAL013W CSM2P40465 213 aa16.21■□□□□ 0.19
DEP1YAL013W CIR1P42940 261 aa16.21■□□□□ 0.19
DEP1YAL013W SEN54Q02825 467 aaPredicted RBP16.21■□□□□ 0.19
DEP1YAL013W HPR1P17629 752 aaKnown RBP16.2■□□□□ 0.18
DEP1YAL013W SRM1P21827 482 aa16.2■□□□□ 0.18
DEP1YAL013W BMH2P34730 273 aaKnown RBP16.2■□□□□ 0.18
DEP1YAL013W ENT3P47160 408 aa16.2■□□□□ 0.18
DEP1YAL013W ADP1P25371 1049 aa16.19■□□□□ 0.18
DEP1YAL013W BUD6P41697 788 aa16.19■□□□□ 0.18
DEP1YAL013W SWI4P25302 1093 aaKnown RBP16.18■□□□□ 0.18
DEP1YAL013W MAL31P38156 614 aa16.18■□□□□ 0.18
DEP1YAL013W MAL33P38157 468 aa16.18■□□□□ 0.18
DEP1YAL013W VPS8P39702 1274 aa16.18■□□□□ 0.18
DEP1YAL013W ALG2P43636 503 aa16.18■□□□□ 0.18
DEP1YAL013W PEX14P53112 341 aa16.18■□□□□ 0.18
DEP1YAL013W RPT6Q01939 405 aaKnown RBP16.18■□□□□ 0.18
DEP1YAL013W YOR111WQ99210 232 aa16.18■□□□□ 0.18
DEP1YAL013W RNR3P21672 869 aaKnown RBP16.17■□□□□ 0.18
DEP1YAL013W RAD53P22216 821 aa16.17■□□□□ 0.18
DEP1YAL013W ELM1P32801 640 aa16.17■□□□□ 0.18
DEP1YAL013W EMP47P43555 445 aa16.17■□□□□ 0.18
DEP1YAL013W YGL081WP53156 320 aa16.17■□□□□ 0.18
DEP1YAL013W PEX19Q07418 342 aa16.17■□□□□ 0.18
DEP1YAL013W MYO1P08964 1928 aa16.17■□□□□ 0.18
Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms