RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CDCA8Q53HL2 280 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 CARD14Q9BXL6 1004 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 SLC12A5Q9H2X9 1139 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 PDE3BQ13370 1112 aa12.74□□□□□ -0.37
VPS39-214ENST00000614932 MAPK8IP2Q13387 824 aaPredicted RBP12.74□□□□□ -0.37
VPS39-214ENST00000614932 EIF3AQ14152 1382 aaKnown RBP12.74□□□□□ -0.37
VPS39-214ENST00000614932 LAMC1P11047 1609 aa12.74□□□□□ -0.37
VPS39-214ENST00000614932 XPCQ01831 940 aaPredicted RBP12.74□□□□□ -0.37
VPS39-214ENST00000614932 IDI1Q13907 227 aa12.74□□□□□ -0.37
VPS39-214ENST00000614932 CHMP5Q9NZZ3 219 aa12.74□□□□□ -0.37
VPS39-214ENST00000614932 NOL7Q9UMY1 257 aaKnown RBP12.74□□□□□ -0.37
VPS39-214ENST00000614932 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
VPS39-214ENST00000614932 IQGAP1P46940 1657 aa12.73□□□□□ -0.37
VPS39-214ENST00000614932 CLGNO14967 610 aa12.72□□□□□ -0.37
VPS39-214ENST00000614932 HECW2Q9P2P5 1572 aa12.72□□□□□ -0.37
VPS39-214ENST00000614932 NASPP49321 788 aaPredicted RBP12.72□□□□□ -0.37
VPS39-214ENST00000614932 TBC1D2Q9BYX2 928 aa12.72□□□□□ -0.37
VPS39-214ENST00000614932 MLH3Q9UHC1 1453 aa12.72□□□□□ -0.37
VPS39-214ENST00000614932 KCNJ4P48050 445 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 ATP2B3Q16720 1220 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 CERS3Q8IU89 383 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 HDAC5Q9UQL6 1122 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 MAP3K4Q9Y6R4 1608 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 KIF1BO60333 1816 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 KCNG1Q9UIX4 513 aa12.71□□□□□ -0.37
VPS39-214ENST00000614932 CNPY4Q8N129 248 aa12.7□□□□□ -0.38
VPS39-214ENST00000614932 ZNF771Q7L3S4 317 aaPredicted RBP12.7□□□□□ -0.38
VPS39-214ENST00000614932 ERVK-7P63135 1459 aa12.7□□□□□ -0.38
VPS39-214ENST00000614932 C14orf93Q9H972 538 aaKnown RBP12.7□□□□□ -0.38
VPS39-214ENST00000614932 CABP2Q9NPB3 220 aa12.69□□□□□ -0.38
VPS39-214ENST00000614932 AEBP1Q8IUX7 1158 aa12.69□□□□□ -0.38
VPS39-214ENST00000614932 STAG3Q9UJ98 1225 aa12.69□□□□□ -0.38
VPS39-214ENST00000614932 ABCC3O15438 1527 aa12.69□□□□□ -0.38
VPS39-214ENST00000614932 SKOR2Q2VWA4 1001 aaPredicted RBP12.68□□□□□ -0.38
VPS39-214ENST00000614932 MYRIPQ8NFW9 859 aa12.68□□□□□ -0.38
VPS39-214ENST00000614932 NLRP1Q9C000 1473 aa12.68□□□□□ -0.38
VPS39-214ENST00000614932 MCM5P33992 734 aa12.68□□□□□ -0.38
VPS39-214ENST00000614932 NEUROD2Q15784 382 aa12.68□□□□□ -0.38
VPS39-214ENST00000614932 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.68□□□□□ -0.38
VPS39-214ENST00000614932 SEC24BO95487 1268 aa12.67□□□□□ -0.38
VPS39-214ENST00000614932 ZNF710Q8N1W2 664 aa12.67□□□□□ -0.38
VPS39-214ENST00000614932 TSPOAP1O95153 1857 aa12.67□□□□□ -0.38
VPS39-214ENST00000614932 PSEN1P49768 467 aa12.67□□□□□ -0.38
VPS39-214ENST00000614932 SLC52A1Q9NWF4 448 aa12.67□□□□□ -0.38
VPS39-214ENST00000614932 APAF1O14727 1248 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 CNKSR2Q8WXI2 1034 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 MYOM2P54296 1465 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 APPP05067 770 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 SPRYD3Q8NCJ5 442 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 ZKSCAN5Q9Y2L8 839 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 CFAP74Q9C0B2 1584 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 DIP2CQ9Y2E4 1556 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 ADGRB3O60242 1522 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 ASXL1Q8IXJ9 1541 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 NEO1Q92859 1461 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 PLEKHH1Q9ULM0 1364 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 WWC1Q8IX03 1113 aa12.66□□□□□ -0.38
VPS39-214ENST00000614932 IGSF3O75054 1194 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 YY1AP1Q9H869 796 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 UPF2Q9HAU5 1272 aaKnown RBP12.65□□□□□ -0.38
VPS39-214ENST00000614932 SIGLEC1Q9BZZ2 1709 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 LMTK2Q8IWU2 1503 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 MINK1Q8N4C8 1332 aaPredicted RBP12.65□□□□□ -0.38
VPS39-214ENST00000614932 CCDC66A2RUB6 948 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 PTMSP20962 102 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 AXDND1Q5T1B0 1012 aaPredicted RBP12.65□□□□□ -0.38
VPS39-214ENST00000614932 MORC1Q86VD1 984 aa12.65□□□□□ -0.38
VPS39-214ENST00000614932 PIK3C2GO75747 1445 aa12.64□□□□□ -0.39
VPS39-214ENST00000614932 HSP90B1P14625 803 aaKnown RBP12.64□□□□□ -0.39
VPS39-214ENST00000614932 C20orf194Q5TEA3 1177 aa12.64□□□□□ -0.39
VPS39-214ENST00000614932 RRP7AQ9Y3A4 280 aaKnown RBP12.64□□□□□ -0.39
VPS39-214ENST00000614932 NSD3Q9BZ95 1437 aa12.64□□□□□ -0.39
VPS39-214ENST00000614932 SRPK2P78362 688 aaKnown RBP12.64□□□□□ -0.39
VPS39-214ENST00000614932 SPINK5Q9NQ38 1064 aaPredicted RBP12.64□□□□□ -0.39
VPS39-214ENST00000614932 MYOM1P52179 1685 aa12.64□□□□□ -0.39
VPS39-214ENST00000614932 SYNMO15061 1565 aa12.63□□□□□ -0.39
VPS39-214ENST00000614932 SOX12O15370 315 aa12.63□□□□□ -0.39
VPS39-214ENST00000614932 ZNF622Q969S3 477 aaKnown RBP eCLIP12.63□□□□□ -0.397e-7■■■□□ 14.8
VPS39-214ENST00000614932 TIGD1Q96MW7 591 aa12.63□□□□□ -0.39
VPS39-214ENST00000614932 TBC1D32Q96NH3 1257 aa12.63□□□□□ -0.39
VPS39-214ENST00000614932 GEMIN8Q9NWZ8 242 aaKnown RBP12.63□□□□□ -0.39
VPS39-214ENST00000614932 KDM5AP29375 1690 aaKnown RBP12.63□□□□□ -0.39
VPS39-214ENST00000614932 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
VPS39-214ENST00000614932 BLMP54132 1417 aaPredicted RBP12.63□□□□□ -0.39
VPS39-214ENST00000614932 GTF2F1P35269 517 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS39-214ENST00000614932 NGEFQ8N5V2 710 aa12.62□□□□□ -0.39
VPS39-214ENST00000614932 CAMSAP1Q5T5Y3 1602 aa12.62□□□□□ -0.39
VPS39-214ENST00000614932 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
VPS39-214ENST00000614932 PRIMPOLQ96LW4 560 aa12.62□□□□□ -0.39
VPS39-214ENST00000614932 DMRT2Q9Y5R5 561 aa12.62□□□□□ -0.39
VPS39-214ENST00000614932 TSPYL1Q9H0U9 437 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 TRIM6-TRIM34B2RNG4 842 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 HMGN5P82970 282 aaKnown RBP12.61□□□□□ -0.39
VPS39-214ENST00000614932 PDLIM2Q96JY6 352 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 PRAM1Q96QH2 718 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 TRIM34Q9BYJ4 488 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 IFT172Q9UG01 1749 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 NRXN1Q9ULB1 1477 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 RIMBP3CA6NJZ7 1639 aa12.61□□□□□ -0.39
VPS39-214ENST00000614932 RIMBP3BA6NNM3 1639 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms