RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RTF1Q92541 710 aaKnown RBP15.5■□□□□ 0.07
LIG1-221ENST00000613670 NECTIN2Q92692 538 aa15.5■□□□□ 0.07
LIG1-221ENST00000613670 ANTXR1Q9H6X2 564 aa15.5■□□□□ 0.07
LIG1-221ENST00000613670 INTS3Q68E01 1043 aaKnown RBP15.5■□□□□ 0.07
LIG1-221ENST00000613670 CIZ1Q9ULV3 898 aaPredicted RBP15.5■□□□□ 0.07
LIG1-221ENST00000613670 LMOD3Q0VAK6 560 aa15.49■□□□□ 0.07
LIG1-221ENST00000613670 DCTN1Q14203 1278 aa15.49■□□□□ 0.07
LIG1-221ENST00000613670 KIAA1211Q6ZU35 1233 aa15.49■□□□□ 0.07
LIG1-221ENST00000613670 CLCN1P35523 988 aa15.49■□□□□ 0.07
LIG1-221ENST00000613670 NPC1L1Q9UHC9 1359 aa15.49■□□□□ 0.07
LIG1-221ENST00000613670 HMMRO75330 724 aa15.49■□□□□ 0.07
LIG1-221ENST00000613670 HAP1P54257 671 aaPredicted RBP15.48■□□□□ 0.07
LIG1-221ENST00000613670 NUCB1Q02818 461 aa15.48■□□□□ 0.07
LIG1-221ENST00000613670 C14orf93Q9H972 538 aaKnown RBP15.48■□□□□ 0.07
LIG1-221ENST00000613670 REC8O95072 547 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 OS9Q13438 667 aaPredicted RBP15.47■□□□□ 0.07
LIG1-221ENST00000613670 SMC5Q8IY18 1101 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 ANO2Q9NQ90 1003 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 CCDC173Q0VFZ6 552 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 CCDC27Q2M243 656 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 COG3Q96JB2 828 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 CDK19Q9BWU1 502 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 SMARCA5O60264 1052 aaPredicted RBP15.47■□□□□ 0.07
LIG1-221ENST00000613670 NEK4P51957 841 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 RABEP1Q15276 862 aa15.47■□□□□ 0.07
LIG1-221ENST00000613670 ZBTB40Q9NUA8 1239 aa15.46■□□□□ 0.07
LIG1-221ENST00000613670 ISY1Q9ULR0 285 aaKnown RBP15.46■□□□□ 0.07
LIG1-221ENST00000613670 PRDM15P57071 1507 aaPredicted RBP15.46■□□□□ 0.07
LIG1-221ENST00000613670 BMP2KLQ5H9B9 411 aa15.46■□□□□ 0.07
LIG1-221ENST00000613670 PLCH2O75038 1416 aa15.46■□□□□ 0.06
LIG1-221ENST00000613670 GAS2L2Q8NHY3 880 aa15.45■□□□□ 0.06
LIG1-221ENST00000613670 STK31Q9BXU1 1019 aa15.45■□□□□ 0.06
LIG1-221ENST00000613670 TRPM1Q7Z4N2 1603 aa15.45■□□□□ 0.06
LIG1-221ENST00000613670 FCHSD2O94868 740 aa15.44■□□□□ 0.06
LIG1-221ENST00000613670 RAPGEF3O95398 923 aa15.44■□□□□ 0.06
LIG1-221ENST00000613670 KCNJ4P48050 445 aa15.44■□□□□ 0.06
LIG1-221ENST00000613670 RRS1Q15050 365 aaKnown RBP15.44■□□□□ 0.06
LIG1-221ENST00000613670 KIAA2012Q0VF49 1180 aa15.44■□□□□ 0.06
LIG1-221ENST00000613670 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.44■□□□□ 0.06
LIG1-221ENST00000613670 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.44■□□□□ 0.06
LIG1-221ENST00000613670 SAMD9LQ8IVG5 1584 aa15.44■□□□□ 0.06
LIG1-221ENST00000613670 BAG4O95429 457 aaKnown RBP15.43■□□□□ 0.06
LIG1-221ENST00000613670 TSPYL6Q8N831 410 aa15.43■□□□□ 0.06
LIG1-221ENST00000613670 FYB1O15117 783 aa15.43■□□□□ 0.06
LIG1-221ENST00000613670 SYAP1Q96A49 352 aaPredicted RBP15.43■□□□□ 0.06
LIG1-221ENST00000613670 EMILIN1Q9Y6C2 1016 aa15.43■□□□□ 0.06
LIG1-221ENST00000613670 PKNOX2Q96KN3 472 aa15.43■□□□□ 0.06
LIG1-221ENST00000613670 NFE2L2Q16236 605 aa15.42■□□□□ 0.06
LIG1-221ENST00000613670 FAM83GA6ND36 823 aa15.42■□□□□ 0.06
LIG1-221ENST00000613670 RRP9O43818 475 aaKnown RBP15.42■□□□□ 0.06
LIG1-221ENST00000613670 ZSCAN30Q86W11 494 aa15.42■□□□□ 0.06
LIG1-221ENST00000613670 C16orf71Q8IYS4 520 aaPredicted RBP15.42■□□□□ 0.06
LIG1-221ENST00000613670 TRIM35Q9UPQ4 493 aa15.42■□□□□ 0.06
LIG1-221ENST00000613670 ALDH1L2Q3SY69 923 aa15.42■□□□□ 0.06
LIG1-221ENST00000613670 CDC42BPAQ5VT25 1732 aa15.42■□□□□ 0.06
LIG1-221ENST00000613670 ARHGEF5Q12774 1597 aa15.41■□□□□ 0.06
LIG1-221ENST00000613670 RBM27Q9P2N5 1060 aaKnown RBP15.41■□□□□ 0.06
LIG1-221ENST00000613670 WAPLQ7Z5K2 1190 aa15.4■□□□□ 0.06
LIG1-221ENST00000613670 GAS2L3Q86XJ1 694 aa15.4■□□□□ 0.06
LIG1-221ENST00000613670 SYCE3A1L190 88 aa15.4■□□□□ 0.06
LIG1-221ENST00000613670 TPM2P07951 284 aa15.4■□□□□ 0.06
LIG1-221ENST00000613670 XPCQ01831 940 aaPredicted RBP15.4■□□□□ 0.06
LIG1-221ENST00000613670 IDI1Q13907 227 aa15.4■□□□□ 0.06
LIG1-221ENST00000613670 RAB3GAP1Q15042 981 aa15.4■□□□□ 0.06
LIG1-221ENST00000613670 SNX21Q969T3 373 aa15.39■□□□□ 0.05
LIG1-221ENST00000613670 LTV1Q96GA3 475 aaPredicted RBP15.39■□□□□ 0.05
LIG1-221ENST00000613670 MAST1Q9Y2H9 1570 aa15.39■□□□□ 0.05
LIG1-221ENST00000613670 PTPRTO14522 1441 aa15.39■□□□□ 0.05
LIG1-221ENST00000613670 SULT6B1Q6IMI4 303 aa15.39■□□□□ 0.05
LIG1-221ENST00000613670 MIS18AQ9NYP9 233 aa15.39■□□□□ 0.05
LIG1-221ENST00000613670 SLC4A2P04920 1241 aa15.39■□□□□ 0.05
LIG1-221ENST00000613670 PHACTR3Q96KR7 559 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 CHMP3Q9Y3E7 222 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 ERVK-7P63135 1459 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 FKBP5Q13451 457 aaPredicted RBP15.38■□□□□ 0.05
LIG1-221ENST00000613670 MBIPQ9NS73 344 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 ABCA8O94911 1581 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 ABCC11Q96J66 1382 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 ABCC2Q92887 1545 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 ADGRL1O94910 1474 aa15.38■□□□□ 0.05
LIG1-221ENST00000613670 FSD2A1L4K1 749 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 RBM25P49756 843 aaKnown RBP15.37■□□□□ 0.05
LIG1-221ENST00000613670 GOLGA6L4A6NEF3 574 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 TSHZ3Q63HK5 1081 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 CD2BP2O95400 341 aaKnown RBP15.37■□□□□ 0.05
LIG1-221ENST00000613670 NME9Q86XW9 330 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 EXOC6BQ9Y2D4 811 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 ANKRD36BQ8N2N9 1353 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 RPGRIP1LQ68CZ1 1315 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 ATP10AO60312 1499 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 DRC7Q8IY82 874 aa15.37■□□□□ 0.05
LIG1-221ENST00000613670 MCM10Q7L590 875 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 C8orf58Q8NAV2 365 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 TSPYL4Q9UJ04 414 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 FANCAO15360 1455 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 ATAD2Q6PL18 1390 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 KLHL40Q2TBA0 621 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 UPF3BQ9BZI7 483 aaKnown RBP15.36■□□□□ 0.05
LIG1-221ENST00000613670 ERC2O15083 957 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 ZNF428Q96B54 188 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms