RNA–Protein interactions for RNA: ENST00000597777.1

FARP1-222, Transcript of FERM, ARH/RhoGEF and pleckstrin domain protein 1, human

Gene FARP1, Length 3,841 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FARP1-222	ENST00000597777	NCOA3	Q9Y6Q9	1424 aa		12.86	□□□□□ -0.35
FARP1-222	ENST00000597777	ADGRL3	Q9HAR2	1447 aa		12.86	□□□□□ -0.35
FARP1-222	ENST00000597777		A0A1W2PP64	1363 aa		12.86	□□□□□ -0.35
FARP1-222	ENST00000597777	BRD4	O60885	1362 aa	Predicted RBP	12.86	□□□□□ -0.35
FARP1-222	ENST00000597777	NUTM2F	A1L443	756 aa		12.86	□□□□□ -0.35
FARP1-222	ENST00000597777	CARD14	Q9BXL6	1004 aa		12.86	□□□□□ -0.35
FARP1-222	ENST00000597777	KIF20B	Q96Q89	1820 aa		12.85	□□□□□ -0.35
FARP1-222	ENST00000597777	CPSF1	Q10570	1443 aa	Known RBP	12.85	□□□□□ -0.35
FARP1-222	ENST00000597777	PPIP5K1	Q6PFW1	1433 aa		12.85	□□□□□ -0.35
FARP1-222	ENST00000597777	SPRYD3	Q8NCJ5	442 aa		12.85	□□□□□ -0.35
FARP1-222	ENST00000597777	BCL2L13	Q9BXK5	485 aa		12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	FANCI	Q9NVI1	1328 aa		12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	CGNL1	Q0VF96	1302 aa		12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	U2SURP	O15042	1029 aa	Known RBP	12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	NUDT16	Q96DE0	195 aa	Known RBP	12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	CCDC61	Q9Y6R9	512 aa		12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	NRK	Q7Z2Y5	1582 aa		12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	STRCP1	A6NGW2	1772 aa		12.84	□□□□□ -0.35
FARP1-222	ENST00000597777	CLUAP1	Q96AJ1	413 aa		12.83	□□□□□ -0.36
FARP1-222	ENST00000597777	PRKCSH	P14314	528 aa	Predicted RBP	12.82	□□□□□ -0.36
FARP1-222	ENST00000597777	NLRP13	Q86W25	1043 aa		12.82	□□□□□ -0.36
FARP1-222	ENST00000597777	CDCA7L	Q96GN5	454 aa		12.82	□□□□□ -0.36
FARP1-222	ENST00000597777	EDC4	Q6P2E9	1401 aa	Known RBP	12.82	□□□□□ -0.36
FARP1-222	ENST00000597777	TPRN	Q4KMQ1	711 aa		12.82	□□□□□ -0.36
FARP1-222	ENST00000597777	PRR36	Q9H6K5	1346 aa		12.81	□□□□□ -0.36
FARP1-222	ENST00000597777	CABP1	Q9NZU7	370 aa		12.81	□□□□□ -0.36
FARP1-222	ENST00000597777	PLEKHG3	A1L390	1219 aa		12.81	□□□□□ -0.36
FARP1-222	ENST00000597777	HSPA2	P54652	639 aa		12.81	□□□□□ -0.36
FARP1-222	ENST00000597777	DCC	P43146	1447 aa		12.81	□□□□□ -0.36
FARP1-222	ENST00000597777	EXOC6	Q8TAG9	804 aa		12.8	□□□□□ -0.36
FARP1-222	ENST00000597777	ZNF692	Q9BU19	519 aa	Predicted RBP	12.8	□□□□□ -0.36
FARP1-222	ENST00000597777	POLR3A	O14802	1390 aa	Predicted RBP	12.79	□□□□□ -0.36
FARP1-222	ENST00000597777	RGPD8	O14715	1765 aa	Predicted RBP	12.79	□□□□□ -0.36
FARP1-222	ENST00000597777	INSR	P06213	1382 aa		12.78	□□□□□ -0.36
FARP1-222	ENST00000597777	C14orf37	Q86TY3	774 aa		12.78	□□□□□ -0.36
FARP1-222	ENST00000597777	DMRT2	Q9Y5R5	561 aa		12.78	□□□□□ -0.36
FARP1-222	ENST00000597777	KIF1A	Q12756	1690 aa		12.77	□□□□□ -0.37
FARP1-222	ENST00000597777	USP54	Q70EL1	1684 aa		12.77	□□□□□ -0.37
FARP1-222	ENST00000597777	PPP2R1A	P30153	589 aa		12.76	□□□□□ -0.37
FARP1-222	ENST00000597777	RCAN3	Q9UKA8	241 aa		12.76	□□□□□ -0.37
FARP1-222	ENST00000597777	XIRP1	Q702N8	1843 aa	Known RBP	12.76	□□□□□ -0.37
FARP1-222	ENST00000597777	USP6	P35125	1406 aa		12.76	□□□□□ -0.37
FARP1-222	ENST00000597777	SSH2	Q76I76	1423 aa		12.76	□□□□□ -0.37
FARP1-222	ENST00000597777	PROSER2	Q86WR7	435 aa	Predicted RBP	12.75	□□□□□ -0.37
FARP1-222	ENST00000597777	LRRC7	Q96NW7	1537 aa		12.75	□□□□□ -0.37
FARP1-222	ENST00000597777	MORC1	Q86VD1	984 aa		12.74	□□□□□ -0.37
FARP1-222	ENST00000597777	DEK	P35659	375 aa	Known RBP	12.74	□□□□□ -0.37
FARP1-222	ENST00000597777	ACE	P12821	1306 aa		12.74	□□□□□ -0.37
FARP1-222	ENST00000597777	C19orf44	Q9H6X5	657 aa		12.74	□□□□□ -0.37
FARP1-222	ENST00000597777	TCERG1	O14776	1098 aa	Known RBP	12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	FYB1	O15117	783 aa		12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	PNISR	Q8TF01	805 aa	Known RBP	12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	TMEM94	Q12767	1356 aa		12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	NEFM	P07197	916 aa		12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	TTC21A	Q8NDW8	1320 aa		12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	APBB1	O00213	710 aa		12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	NOP58	Q9Y2X3	529 aa	Known RBP	12.73	□□□□□ -0.37
FARP1-222	ENST00000597777	ELL2	O00472	640 aa	Predicted RBP	12.71	□□□□□ -0.37
FARP1-222	ENST00000597777	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	NUDC	Q9Y266	331 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	SMG6	Q86US8	1419 aa	Known RBP	12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	TTC21B	Q7Z4L5	1316 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	C1orf167	Q5SNV9	1468 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	AATK	Q6ZMQ8	1374 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	OVOS2	A0A0J9YW53	1432 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	MST1R	Q04912	1400 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	OVOS2	Q6IE36	1432 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	PIK3C2A	O00443	1686 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	SHPRH	Q149N8	1683 aa		12.7	□□□□□ -0.38
FARP1-222	ENST00000597777	MSH6	P52701	1360 aa		12.69	□□□□□ -0.38
FARP1-222	ENST00000597777	USP31	Q70CQ4	1352 aa		12.69	□□□□□ -0.38
FARP1-222	ENST00000597777	HSP90AA1	P07900	732 aa	Known RBP	12.69	□□□□□ -0.38
FARP1-222	ENST00000597777	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.69	□□□□□ -0.38
FARP1-222	ENST00000597777	PHF8	Q9UPP1	1060 aa		12.69	□□□□□ -0.38
FARP1-222	ENST00000597777	BLM	P54132	1417 aa	Predicted RBP	12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	ERICH6B	Q5W0A0	696 aa		12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	NGDN	Q8NEJ9	315 aa	Known RBP	12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	APAF1	O14727	1248 aa		12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	GGNBP2	Q9H3C7	697 aa		12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	CADPS2	Q86UW7	1296 aa		12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	SLK	Q9H2G2	1235 aa	Predicted RBP	12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	MARF1	Q9Y4F3	1742 aa	Known RBP	12.68	□□□□□ -0.38
FARP1-222	ENST00000597777	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.67	□□□□□ -0.38
FARP1-222	ENST00000597777	ATF3	P18847	181 aa		12.67	□□□□□ -0.38
FARP1-222	ENST00000597777	LMOD2	Q6P5Q4	547 aa		12.67	□□□□□ -0.38
FARP1-222	ENST00000597777	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.67	□□□□□ -0.38
FARP1-222	ENST00000597777	COL3A1	P02461	1466 aa	Predicted RBP	12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	PAK3	O75914	559 aa	Predicted RBP	12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	COG3	Q96JB2	828 aa		12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	CRBN	Q96SW2	442 aa		12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	PMFBP1	Q8TBY8	1022 aa		12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	RBM33	Q96EV2	1170 aa	Known RBP	12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	CFAP53	Q96M91	514 aa		12.66	□□□□□ -0.38
FARP1-222	ENST00000597777	PNPLA6	Q8IY17	1366 aa		12.65	□□□□□ -0.38
FARP1-222	ENST00000597777	NME9	Q86XW9	330 aa		12.65	□□□□□ -0.38
FARP1-222	ENST00000597777	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.65	□□□□□ -0.38

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