RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CABP1Q9NZU7 370 aa13.05□□□□□ -0.32
VPS53-220ENST00000576149 SETD1AO15047 1707 aaKnown RBP13.05□□□□□ -0.32
VPS53-220ENST00000576149 PLEKHF1Q96S99 279 aa13.04□□□□□ -0.32
VPS53-220ENST00000576149 CANXP27824 592 aaKnown RBP13.03□□□□□ -0.32
VPS53-220ENST00000576149 WAPLQ7Z5K2 1190 aa13.03□□□□□ -0.32
VPS53-220ENST00000576149 NPM2Q86SE8 214 aaKnown RBP13.03□□□□□ -0.32
VPS53-220ENST00000576149 MYH16Q9H6N6 1097 aa13.03□□□□□ -0.32
VPS53-220ENST00000576149 PNPLA6Q8IY17 1366 aa13.03□□□□□ -0.32
VPS53-220ENST00000576149 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.32
VPS53-220ENST00000576149 PANK1Q8TE04 598 aa13.02□□□□□ -0.32
VPS53-220ENST00000576149 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS53-220ENST00000576149 CLUAP1Q96AJ1 413 aa13.02□□□□□ -0.33
VPS53-220ENST00000576149 ZMYM3Q14202 1370 aa13.02□□□□□ -0.33
VPS53-220ENST00000576149 ATP7BP35670 1465 aa13.02□□□□□ -0.33
VPS53-220ENST00000576149 COG6Q9Y2V7 657 aa13.01□□□□□ -0.33
VPS53-220ENST00000576149 FRAT1Q92837 279 aaPredicted RBP13.01□□□□□ -0.33
VPS53-220ENST00000576149 NRXN3Q9Y4C0 1643 aa13.01□□□□□ -0.33
VPS53-220ENST00000576149 IGHDP01880 384 aa13□□□□□ -0.33
VPS53-220ENST00000576149 TMPOP42166 694 aaKnown RBP13□□□□□ -0.33
VPS53-220ENST00000576149 KIF20BQ96Q89 1820 aa13□□□□□ -0.33
VPS53-220ENST00000576149 DIAPH1O60610 1272 aaKnown RBP13□□□□□ -0.33
VPS53-220ENST00000576149 AAMPQ13685 434 aa13□□□□□ -0.33
VPS53-220ENST00000576149 KIF13AQ9H1H9 1805 aa12.99□□□□□ -0.33
VPS53-220ENST00000576149 CT47B1P0C2W7 299 aaPredicted RBP12.99□□□□□ -0.33
VPS53-220ENST00000576149 FAM161AQ3B820 660 aa12.99□□□□□ -0.33
VPS53-220ENST00000576149 ESF1Q9H501 851 aaKnown RBP12.99□□□□□ -0.33
VPS53-220ENST00000576149 TRIM35Q9UPQ4 493 aa12.99□□□□□ -0.33
VPS53-220ENST00000576149 MAPK8IP3Q9UPT6 1336 aa12.99□□□□□ -0.33
VPS53-220ENST00000576149 METP08581 1390 aa12.98□□□□□ -0.33
VPS53-220ENST00000576149 C8orf34Q49A92 452 aa12.98□□□□□ -0.33
VPS53-220ENST00000576149 PNNQ9H307 717 aaKnown RBP12.98□□□□□ -0.33
VPS53-220ENST00000576149 WASLO00401 505 aaPredicted RBP12.98□□□□□ -0.33
VPS53-220ENST00000576149 RLBP1P12271 317 aa12.98□□□□□ -0.33
VPS53-220ENST00000576149 IL16Q14005 1332 aa12.97□□□□□ -0.33
VPS53-220ENST00000576149 RGS3P49796 1198 aa12.97□□□□□ -0.33
VPS53-220ENST00000576149 HDGFP51858 240 aaKnown RBP12.97□□□□□ -0.33
VPS53-220ENST00000576149 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.97□□□□□ -0.33
VPS53-220ENST00000576149 SIRT1Q96EB6 747 aa12.97□□□□□ -0.33
VPS53-220ENST00000576149 BCL2L13Q9BXK5 485 aa12.97□□□□□ -0.33
VPS53-220ENST00000576149 CPSF1Q10570 1443 aaKnown RBP12.97□□□□□ -0.33
VPS53-220ENST00000576149 CDC42BPGQ6DT37 1551 aa12.97□□□□□ -0.33
VPS53-220ENST00000576149 TECPR2O15040 1411 aa12.96□□□□□ -0.33
VPS53-220ENST00000576149 FAM135BQ49AJ0 1406 aa12.96□□□□□ -0.33
VPS53-220ENST00000576149 POLKQ9UBT6 870 aa12.96□□□□□ -0.33
VPS53-220ENST00000576149 TNNQ9UQP3 1299 aa12.96□□□□□ -0.33
VPS53-220ENST00000576149 FCHSD2O94868 740 aa12.96□□□□□ -0.34
VPS53-220ENST00000576149 TSR2Q969E8 191 aaKnown RBP12.96□□□□□ -0.34
VPS53-220ENST00000576149 TNRQ92752 1358 aa12.95□□□□□ -0.34
VPS53-220ENST00000576149 EDC4Q6P2E9 1401 aaKnown RBP12.95□□□□□ -0.34
VPS53-220ENST00000576149 PPIP5K1Q6PFW1 1433 aa12.95□□□□□ -0.34
VPS53-220ENST00000576149 RIPK4P57078 832 aa12.95□□□□□ -0.34
VPS53-220ENST00000576149 TXNDC2Q86VQ3 553 aa12.95□□□□□ -0.34
VPS53-220ENST00000576149 EXOSC9Q06265 439 aaKnown RBP12.94□□□□□ -0.34
VPS53-220ENST00000576149 PMFBP1Q8TBY8 1022 aa12.94□□□□□ -0.34
VPS53-220ENST00000576149 DDRGK1Q96HY6 314 aa12.94□□□□□ -0.34
VPS53-220ENST00000576149 KNDC1Q76NI1 1749 aa12.94□□□□□ -0.34
VPS53-220ENST00000576149 ZKSCAN2Q63HK3 967 aa12.93□□□□□ -0.34
VPS53-220ENST00000576149 NUDT16Q96DE0 195 aaKnown RBP12.93□□□□□ -0.34
VPS53-220ENST00000576149 PCDHB15Q9Y5E8 787 aa12.93□□□□□ -0.34
VPS53-220ENST00000576149 TMEM2Q9UHN6 1383 aa12.93□□□□□ -0.34
VPS53-220ENST00000576149 FBLN1P23142 703 aa12.93□□□□□ -0.34
VPS53-220ENST00000576149 NBR1Q14596 966 aa12.93□□□□□ -0.34
VPS53-220ENST00000576149 RSPH6AQ9H0K4 717 aa12.93□□□□□ -0.34
VPS53-220ENST00000576149 CPS1P31327 1500 aa12.92□□□□□ -0.34
VPS53-220ENST00000576149 LRRC7Q96NW7 1537 aa12.92□□□□□ -0.34
VPS53-220ENST00000576149 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
VPS53-220ENST00000576149 MVPQ14764 893 aaKnown RBP12.92□□□□□ -0.34
VPS53-220ENST00000576149 AATKQ6ZMQ8 1374 aa12.91□□□□□ -0.34
VPS53-220ENST00000576149 PPM1GO15355 546 aaPredicted RBP12.91□□□□□ -0.34
VPS53-220ENST00000576149 DZIP1LQ8IYY4 767 aaKnown RBP12.91□□□□□ -0.34
VPS53-220ENST00000576149 SMC4Q9NTJ3 1288 aa12.91□□□□□ -0.34
VPS53-220ENST00000576149 PRKAR2BP31323 418 aa12.91□□□□□ -0.34
VPS53-220ENST00000576149 NME9Q86XW9 330 aa12.91□□□□□ -0.34
VPS53-220ENST00000576149 SSH1Q8WYL5 1049 aa12.91□□□□□ -0.34
VPS53-220ENST00000576149 UBR1Q8IWV7 1749 aa12.91□□□□□ -0.34
VPS53-220ENST00000576149 FTSJ3Q8IY81 847 aaKnown RBP12.9□□□□□ -0.34
VPS53-220ENST00000576149 EMILIN1Q9Y6C2 1016 aa12.9□□□□□ -0.34
VPS53-220ENST00000576149 CDK12Q9NYV4 1490 aaPredicted RBP12.89□□□□□ -0.35
VPS53-220ENST00000576149 MAP2P11137 1827 aaKnown RBP12.89□□□□□ -0.35
VPS53-220ENST00000576149 NEFMP07197 916 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 RWDD1Q9H446 243 aaPredicted RBP12.89□□□□□ -0.35
VPS53-220ENST00000576149 NCKAP5LQ9HCH0 1330 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 MON2Q7Z3U7 1717 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 ADAMTS13Q76LX8 1427 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 PDIA4P13667 645 aaKnown RBP12.89□□□□□ -0.35
VPS53-220ENST00000576149 TRIM27P14373 513 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 IL13P35225 146 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 C14orf37Q86TY3 774 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
VPS53-220ENST00000576149 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 ROBO2Q9HCK4 1378 aa12.89□□□□□ -0.35
VPS53-220ENST00000576149 ATF7IPQ6VMQ6 1270 aa12.88□□□□□ -0.35
VPS53-220ENST00000576149 COG3Q96JB2 828 aa12.88□□□□□ -0.35
VPS53-220ENST00000576149 NFE2L2Q16236 605 aa12.88□□□□□ -0.35
VPS53-220ENST00000576149 PHACTR3Q96KR7 559 aa12.88□□□□□ -0.35
VPS53-220ENST00000576149 PRR36Q9H6K5 1346 aa12.88□□□□□ -0.35
VPS53-220ENST00000576149 HMOX1P09601 288 aa12.87□□□□□ -0.35
VPS53-220ENST00000576149 AKAP12Q02952 1782 aa12.87□□□□□ -0.35
VPS53-220ENST00000576149 PLEKHG1Q9ULL1 1385 aa12.87□□□□□ -0.35
VPS53-220ENST00000576149 ALDH1L2Q3SY69 923 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms