RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZC3H13Q5T200 1668 aaKnown RBP16.68■□□□□ 0.26
CLN3-210ENST00000563874 L1TD1Q5T7N2 865 aaKnown RBP16.68■□□□□ 0.26
CLN3-210ENST00000563874 HDAC1Q13547 482 aaPredicted RBP16.67■□□□□ 0.26
CLN3-210ENST00000563874 RRAGDQ9NQL2 400 aaPredicted RBP16.67■□□□□ 0.26
CLN3-210ENST00000563874 PANK2Q9BZ23 570 aa16.66■□□□□ 0.26
CLN3-210ENST00000563874 LNPKQ9C0E8 428 aa16.66■□□□□ 0.26
CLN3-210ENST00000563874 LMTK2Q8IWU2 1503 aa16.66■□□□□ 0.26
CLN3-210ENST00000563874 PPLO60437 1756 aa16.66■□□□□ 0.26
CLN3-210ENST00000563874 XRCC6P12956 609 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLN3-210ENST00000563874 MINK1Q8N4C8 1332 aaPredicted RBP16.66■□□□□ 0.26
CLN3-210ENST00000563874 VGFO15240 615 aaPredicted RBP16.66■□□□□ 0.26
CLN3-210ENST00000563874 RPGRIP1LQ68CZ1 1315 aa16.65■□□□□ 0.26
CLN3-210ENST00000563874 NSD2O96028 1365 aa16.65■□□□□ 0.26
CLN3-210ENST00000563874 GOLGA6L3A6NEY3 463 aa16.65■□□□□ 0.26
CLN3-210ENST00000563874 CT47B1P0C2W7 299 aaPredicted RBP16.65■□□□□ 0.26
CLN3-210ENST00000563874 CHMP5Q9NZZ3 219 aa16.65■□□□□ 0.26
CLN3-210ENST00000563874 FBLN1P23142 703 aa16.65■□□□□ 0.26
CLN3-210ENST00000563874 GLI2P10070 1586 aa16.65■□□□□ 0.26
CLN3-210ENST00000563874 SMC5Q8IY18 1101 aa16.64■□□□□ 0.25
CLN3-210ENST00000563874 FYB1O15117 783 aa16.64■□□□□ 0.25
CLN3-210ENST00000563874 HSCBQ8IWL3 235 aa16.64■□□□□ 0.25
CLN3-210ENST00000563874 ZBTB40Q9NUA8 1239 aa16.64■□□□□ 0.25
CLN3-210ENST00000563874 USP32Q8NFA0 1604 aa16.64■□□□□ 0.25
CLN3-210ENST00000563874 AEBP2Q6ZN18 517 aaPredicted RBP16.64■□□□□ 0.25
CLN3-210ENST00000563874 ADGRB2O60241 1585 aa16.63■□□□□ 0.25
CLN3-210ENST00000563874 TRAK2O60296 914 aa16.63■□□□□ 0.25
CLN3-210ENST00000563874 ABCC11Q96J66 1382 aa16.62■□□□□ 0.25
CLN3-210ENST00000563874 NCBP3Q53F19 620 aaKnown RBP16.62■□□□□ 0.25
CLN3-210ENST00000563874 IDI1Q13907 227 aa16.61■□□□□ 0.25
CLN3-210ENST00000563874 DIAPH1O60610 1272 aaKnown RBP16.61■□□□□ 0.25
CLN3-210ENST00000563874 C1orf115Q9H7X2 142 aa16.61■□□□□ 0.25
CLN3-210ENST00000563874 RAPGEF3O95398 923 aa16.61■□□□□ 0.25
CLN3-210ENST00000563874 PUS7Q96PZ0 661 aaKnown RBP16.61■□□□□ 0.25
CLN3-210ENST00000563874 PRAM1Q96QH2 718 aa16.6■□□□□ 0.25
CLN3-210ENST00000563874 FRMPD1Q5SYB0 1578 aa16.6■□□□□ 0.25
CLN3-210ENST00000563874 TRHP20396 242 aaPredicted RBP16.6■□□□□ 0.25
CLN3-210ENST00000563874 THUMPD2Q9BTF0 503 aaKnown RBP16.6■□□□□ 0.25
CLN3-210ENST00000563874 FSD2A1L4K1 749 aa16.59■□□□□ 0.25
CLN3-210ENST00000563874 IPO8O15397 1037 aaKnown RBP16.59■□□□□ 0.25
CLN3-210ENST00000563874 NUCB1Q02818 461 aa16.59■□□□□ 0.25
CLN3-210ENST00000563874 RSPH6AQ9H0K4 717 aa16.59■□□□□ 0.25
CLN3-210ENST00000563874 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
CLN3-210ENST00000563874 FOXD4L1Q9NU39 408 aa16.59■□□□□ 0.25
CLN3-210ENST00000563874 ELL2O00472 640 aaPredicted RBP16.59■□□□□ 0.25
CLN3-210ENST00000563874 TERF2IPQ9NYB0 399 aa16.59■□□□□ 0.25
CLN3-210ENST00000563874 ARHGEF28Q8N1W1 1705 aaKnown RBP16.58■□□□□ 0.25
CLN3-210ENST00000563874 CHD1LQ86WJ1 897 aa16.58■□□□□ 0.24
CLN3-210ENST00000563874 ZNF692Q9BU19 519 aaPredicted RBP16.58■□□□□ 0.24
CLN3-210ENST00000563874 ABCC3O15438 1527 aa16.58■□□□□ 0.24
CLN3-210ENST00000563874 ANKRD45Q5TZF3 282 aa16.58■□□□□ 0.24
CLN3-210ENST00000563874 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.58■□□□□ 0.24
CLN3-210ENST00000563874 COL3A1P02461 1466 aaPredicted RBP16.57■□□□□ 0.24
CLN3-210ENST00000563874 PRKAR2BP31323 418 aa16.57■□□□□ 0.24
CLN3-210ENST00000563874 CAMSAP1Q5T5Y3 1602 aa16.57■□□□□ 0.24
CLN3-210ENST00000563874 IL16Q14005 1332 aa16.57■□□□□ 0.24
CLN3-210ENST00000563874 NPM1P06748 294 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-210ENST00000563874 HMOX1P09601 288 aa16.56■□□□□ 0.24
CLN3-210ENST00000563874 POGZQ7Z3K3 1410 aa16.56■□□□□ 0.24
CLN3-210ENST00000563874 KLHL34Q8N239 644 aa16.56■□□□□ 0.24
CLN3-210ENST00000563874 CABP1Q9NZU7 370 aa16.56■□□□□ 0.24
CLN3-210ENST00000563874 HSP90AB1P08238 724 aaKnown RBP16.56■□□□□ 0.24
CLN3-210ENST00000563874 NEXMIFQ5QGS0 1516 aa16.55■□□□□ 0.24
CLN3-210ENST00000563874 RBM25P49756 843 aaKnown RBP16.54■□□□□ 0.24
CLN3-210ENST00000563874 PHACTR3Q96KR7 559 aa16.54■□□□□ 0.24
CLN3-210ENST00000563874 SIGLEC1Q9BZZ2 1709 aa16.54■□□□□ 0.24
CLN3-210ENST00000563874 CD2BP2O95400 341 aaKnown RBP16.54■□□□□ 0.24
CLN3-210ENST00000563874 TSPYL6Q8N831 410 aa16.54■□□□□ 0.24
CLN3-210ENST00000563874 HECW2Q9P2P5 1572 aa16.54■□□□□ 0.24
CLN3-210ENST00000563874 TNPO1Q92973 898 aaKnown RBP16.54■□□□□ 0.24
CLN3-210ENST00000563874 HSP90AA1P07900 732 aaKnown RBP16.53■□□□□ 0.24
CLN3-210ENST00000563874 HDGFL2Q7Z4V5 671 aaPredicted RBP16.53■□□□□ 0.24
CLN3-210ENST00000563874 RBM42Q9BTD8 480 aaKnown RBP16.53■□□□□ 0.24
CLN3-210ENST00000563874 CDK19Q9BWU1 502 aa16.53■□□□□ 0.24
CLN3-210ENST00000563874 DDX11L8A8MPP1 907 aa16.52■□□□□ 0.24
CLN3-210ENST00000563874 ALDH1L2Q3SY69 923 aa16.52■□□□□ 0.24
CLN3-210ENST00000563874 MLH3Q9UHC1 1453 aa16.52■□□□□ 0.24
CLN3-210ENST00000563874 ZBTB7BO15156 539 aaPredicted RBP16.52■□□□□ 0.23
CLN3-210ENST00000563874 ATAD2Q6PL18 1390 aa16.52■□□□□ 0.23
CLN3-210ENST00000563874 CD163L1Q9NR16 1453 aa16.52■□□□□ 0.23
CLN3-210ENST00000563874 FCHSD2O94868 740 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 DDIT3P35638 169 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 PPIP5K1Q6PFW1 1433 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 MRE11P49959 708 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 BMP2KLQ5H9B9 411 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 KIF2CQ99661 725 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 GRPEL1Q9HAV7 217 aa16.51■□□□□ 0.23
CLN3-210ENST00000563874 PNNQ9H307 717 aaKnown RBP16.5■□□□□ 0.23
CLN3-210ENST00000563874 VAMP4O75379 141 aa16.5■□□□□ 0.23
CLN3-210ENST00000563874 TBC1D9Q6ZT07 1266 aa16.5■□□□□ 0.23
CLN3-210ENST00000563874 SNX21Q969T3 373 aa16.5■□□□□ 0.23
CLN3-210ENST00000563874 POLKQ9UBT6 870 aa16.5■□□□□ 0.23
CLN3-210ENST00000563874 SIRT2Q8IXJ6 389 aa16.49■□□□□ 0.23
CLN3-210ENST00000563874 NCOA3Q9Y6Q9 1424 aa16.49■□□□□ 0.23
CLN3-210ENST00000563874 PNPLA6Q8IY17 1366 aa16.49■□□□□ 0.23
CLN3-210ENST00000563874 MRPL50Q8N5N7 158 aaKnown RBP16.49■□□□□ 0.23
CLN3-210ENST00000563874 PTPRMP28827 1452 aa16.48■□□□□ 0.23
CLN3-210ENST00000563874 GAS2L3Q86XJ1 694 aa16.48■□□□□ 0.23
CLN3-210ENST00000563874 NAP1L5Q96NT1 182 aaPredicted RBP16.48■□□□□ 0.23
CLN3-210ENST00000563874 EMILIN1Q9Y6C2 1016 aa16.48■□□□□ 0.23
CLN3-210ENST00000563874 LRRC7Q96NW7 1537 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms