RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 RIMBP3CA6NJZ7 1639 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 RIMBP3BA6NNM3 1639 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 KDM6BO15054 1643 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 RIMBP3Q9UFD9 1639 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 DZIP1LQ8IYY4 767 aaKnown RBP9.45□□□□□ -0.9
TCF4-216ENST00000562680 MSH6P52701 1360 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 HSP90AB1P08238 724 aaKnown RBP9.45□□□□□ -0.9
TCF4-216ENST00000562680 ERVK-7P63135 1459 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 NEXNQ0ZGT2 675 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 NUTM2GQ5VZR2 741 aa9.45□□□□□ -0.9
TCF4-216ENST00000562680 SULT6B1Q6IMI4 303 aa9.44□□□□□ -0.9
TCF4-216ENST00000562680 PARD3Q8TEW0 1356 aa9.44□□□□□ -0.9
TCF4-216ENST00000562680 CLUAP1Q96AJ1 413 aa9.44□□□□□ -0.9
TCF4-216ENST00000562680 GPATCH3Q96I76 525 aa9.44□□□□□ -0.9
TCF4-216ENST00000562680 MCCP23508 829 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 NFE2L2Q16236 605 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 LMTK2Q8IWU2 1503 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 AMER1Q5JTC6 1135 aaPredicted RBP9.43□□□□□ -0.9
TCF4-216ENST00000562680 SPG7Q9UQ90 795 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 ANP32BQ92688 251 aaKnown RBP9.43□□□□□ -0.9
TCF4-216ENST00000562680 PRDM11Q9NQV5 511 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 ZFYVE9O95405 1425 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 ACEP12821 1306 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 PPIP5K1Q6PFW1 1433 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 SLC4A10Q6U841 1118 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 PRDM15P57071 1507 aaPredicted RBP9.43□□□□□ -0.9
TCF4-216ENST00000562680 PIK3C2GO75747 1445 aa9.43□□□□□ -0.9
TCF4-216ENST00000562680 PDE3AQ14432 1141 aa9.42□□□□□ -0.9
TCF4-216ENST00000562680 TSPOAP1O95153 1857 aa9.42□□□□□ -0.9
TCF4-216ENST00000562680 NME9Q86XW9 330 aa9.42□□□□□ -0.9
TCF4-216ENST00000562680 LRRIQ1Q96JM4 1722 aa9.42□□□□□ -0.9
TCF4-216ENST00000562680 HMGB2P26583 209 aaKnown RBP9.42□□□□□ -0.9
TCF4-216ENST00000562680 KLHL34Q8N239 644 aa9.42□□□□□ -0.9
TCF4-216ENST00000562680 DNAJC5Q9H3Z4 198 aa9.42□□□□□ -0.9
TCF4-216ENST00000562680 POLR3AO14802 1390 aaPredicted RBP9.41□□□□□ -0.9
TCF4-216ENST00000562680 KIF1BO60333 1816 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 NPHP3Q7Z494 1330 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 C19orf44Q9H6X5 657 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 CCDC30Q5VVM6 783 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 RBM19Q9Y4C8 960 aaKnown RBP9.41□□□□□ -0.9
TCF4-216ENST00000562680 ELL2O00472 640 aaPredicted RBP9.41□□□□□ -0.9
TCF4-216ENST00000562680 KCNA6P17658 529 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 PLEKHG1Q9ULL1 1385 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 INO80Q9ULG1 1556 aaPredicted RBP9.41□□□□□ -0.9
TCF4-216ENST00000562680 AMOTQ4VCS5 1084 aa9.41□□□□□ -0.9
TCF4-216ENST00000562680 TMPOP42166 694 aaKnown RBP9.4□□□□□ -0.9
TCF4-216ENST00000562680 AGLP35573 1532 aa9.4□□□□□ -0.9
TCF4-216ENST00000562680 MEX3CQ5U5Q3 659 aaKnown RBP9.4□□□□□ -0.9
TCF4-216ENST00000562680 ZNF530Q6P9A1 599 aaPredicted RBP9.4□□□□□ -0.9
TCF4-216ENST00000562680 CRBNQ96SW2 442 aa9.4□□□□□ -0.9
TCF4-216ENST00000562680 RRS1Q15050 365 aaKnown RBP9.4□□□□□ -0.91
TCF4-216ENST00000562680 PLA2R1Q13018 1463 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 KRT28Q7Z3Y7 464 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 ZNF330Q9Y3S2 320 aaPredicted RBP9.39□□□□□ -0.91
TCF4-216ENST00000562680 PIK3R4Q99570 1358 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 BCL2L13Q9BXK5 485 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 GOLGA6L22H0YM25 854 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 INSRP06213 1382 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 FYB1O15117 783 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 FKBP5Q13451 457 aaPredicted RBP9.39□□□□□ -0.91
TCF4-216ENST00000562680 COG6Q9Y2V7 657 aa9.39□□□□□ -0.91
TCF4-216ENST00000562680 HSP90AB4PQ58FF6 505 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 NOP58Q9Y2X3 529 aaKnown RBP9.38□□□□□ -0.91
TCF4-216ENST00000562680 FOXO3O43524 673 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 TWISTNBQ3B726 338 aaPredicted RBP9.38□□□□□ -0.91
TCF4-216ENST00000562680 EXOC6Q8TAG9 804 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 IL16Q14005 1332 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 EDC4Q6P2E9 1401 aaKnown RBP9.38□□□□□ -0.91
TCF4-216ENST00000562680 KCNJ4P48050 445 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 EXOSC9Q06265 439 aaKnown RBP9.38□□□□□ -0.91
TCF4-216ENST00000562680 SLFN5Q08AF3 891 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 CCDC184Q52MB2 194 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 TOM1L2Q6ZVM7 507 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 WWC1Q8IX03 1113 aa9.38□□□□□ -0.91
TCF4-216ENST00000562680 KIAA1211Q6ZU35 1233 aa9.37□□□□□ -0.91
TCF4-216ENST00000562680 GNAI3P08754 354 aa9.37□□□□□ -0.91
TCF4-216ENST00000562680 EIF2S2P20042 333 aaKnown RBP9.37□□□□□ -0.91
TCF4-216ENST00000562680 IFT57Q9NWB7 429 aa9.37□□□□□ -0.91
TCF4-216ENST00000562680 KDM5CP41229 1560 aa9.37□□□□□ -0.91
TCF4-216ENST00000562680 UGGT1Q9NYU2 1555 aa9.37□□□□□ -0.91
TCF4-216ENST00000562680 PER1O15534 1290 aaPredicted RBP9.36□□□□□ -0.91
TCF4-216ENST00000562680 HSP90B1P14625 803 aaKnown RBP9.36□□□□□ -0.91
TCF4-216ENST00000562680 C9orf78Q9NZ63 289 aaPredicted RBP9.36□□□□□ -0.91
TCF4-216ENST00000562680 GNAT3A8MTJ3 354 aa9.36□□□□□ -0.91
TCF4-216ENST00000562680 CDCA7LQ96GN5 454 aa9.36□□□□□ -0.91
TCF4-216ENST00000562680 TMX4Q9H1E5 349 aaPredicted RBP9.36□□□□□ -0.91
TCF4-216ENST00000562680 A0A1W2PP64 1363 aa9.36□□□□□ -0.91
TCF4-216ENST00000562680 RNF17Q9BXT8 1623 aaKnown RBP9.36□□□□□ -0.91
TCF4-216ENST00000562680 DIP2CQ9Y2E4 1556 aa9.36□□□□□ -0.91
TCF4-216ENST00000562680 EMILIN1Q9Y6C2 1016 aa9.36□□□□□ -0.91
TCF4-216ENST00000562680 PLIN1O60240 522 aa9.36□□□□□ -0.91
TCF4-216ENST00000562680 PLEKHG3A1L390 1219 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 HSCBQ8IWL3 235 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 ZMYND15Q9H091 742 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 FAM135BQ49AJ0 1406 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 SPHKAPQ2M3C7 1700 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 CFAP65Q6ZU64 1925 aaKnown RBP9.35□□□□□ -0.91
TCF4-216ENST00000562680 FLT4P35916 1363 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 CCDC27Q2M243 656 aa9.35□□□□□ -0.91
TCF4-216ENST00000562680 GORABQ5T7V8 394 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms