RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TRAK2O60296 914 aa15.62■□□□□ 0.09
LDLR-205ENST00000557933 TRHP20396 242 aaPredicted RBP15.62■□□□□ 0.09
LDLR-205ENST00000557933 DZIP1LQ8IYY4 767 aaKnown RBP15.62■□□□□ 0.09
LDLR-205ENST00000557933 SSH1Q8WYL5 1049 aa15.62■□□□□ 0.09
LDLR-205ENST00000557933 MVPQ14764 893 aaKnown RBP15.62■□□□□ 0.09
LDLR-205ENST00000557933 SLC52A1Q9NWF4 448 aa15.62■□□□□ 0.09
LDLR-205ENST00000557933 SETBP1Q9Y6X0 1596 aa15.62■□□□□ 0.09
LDLR-205ENST00000557933 CFAP65Q6ZU64 1925 aaKnown RBP15.61■□□□□ 0.09
LDLR-205ENST00000557933 ADAMTSL3P82987 1691 aa15.61■□□□□ 0.09
LDLR-205ENST00000557933 RBM42Q9BTD8 480 aaKnown RBP15.61■□□□□ 0.09
LDLR-205ENST00000557933 NEXMIFQ5QGS0 1516 aa15.61■□□□□ 0.09
LDLR-205ENST00000557933 ZKSCAN2Q63HK3 967 aa15.61■□□□□ 0.09
LDLR-205ENST00000557933 THUMPD2Q9BTF0 503 aaKnown RBP15.61■□□□□ 0.09
LDLR-205ENST00000557933 NOB1Q9ULX3 412 aaKnown RBP15.61■□□□□ 0.09
LDLR-205ENST00000557933 C3P01024 1663 aa15.6■□□□□ 0.09
LDLR-205ENST00000557933 IQGAP1P46940 1657 aa15.6■□□□□ 0.09
LDLR-205ENST00000557933 TMEM57Q8N5G2 664 aa15.6■□□□□ 0.09
LDLR-205ENST00000557933 RSPH6AQ9H0K4 717 aa15.59■□□□□ 0.09
LDLR-205ENST00000557933 CD2BP2O95400 341 aaKnown RBP15.58■□□□□ 0.08
LDLR-205ENST00000557933 HSP90AA1P07900 732 aaKnown RBP15.58■□□□□ 0.08
LDLR-205ENST00000557933 MYOM1P52179 1685 aa15.57■□□□□ 0.08
LDLR-205ENST00000557933 L1TD1Q5T7N2 865 aaKnown RBP15.57■□□□□ 0.08
LDLR-205ENST00000557933 UBE2Q2Q8WVN8 375 aa15.57■□□□□ 0.08
LDLR-205ENST00000557933 PNNQ9H307 717 aaKnown RBP15.57■□□□□ 0.08
LDLR-205ENST00000557933 MYO5BQ9ULV0 1848 aa15.56■□□□□ 0.08
LDLR-205ENST00000557933 HSCBQ8IWL3 235 aa15.56■□□□□ 0.08
LDLR-205ENST00000557933 CFAP53Q96M91 514 aa15.56■□□□□ 0.08
LDLR-205ENST00000557933 MYO3AQ8NEV4 1616 aa15.56■□□□□ 0.08
LDLR-205ENST00000557933 APBB1O00213 710 aa15.55■□□□□ 0.08
LDLR-205ENST00000557933 ZMYM3Q14202 1370 aa15.55■□□□□ 0.08
LDLR-205ENST00000557933 ERBB4Q15303 1308 aa15.55■□□□□ 0.08
LDLR-205ENST00000557933 SRPK2P78362 688 aaKnown RBP15.55■□□□□ 0.08
LDLR-205ENST00000557933 GAS2L3Q86XJ1 694 aa15.55■□□□□ 0.08
LDLR-205ENST00000557933 MYH16Q9H6N6 1097 aa15.55■□□□□ 0.08
LDLR-205ENST00000557933 POLR3AO14802 1390 aaPredicted RBP15.54■□□□□ 0.08
LDLR-205ENST00000557933 ZBTB7CA1YPR0 619 aa15.54■□□□□ 0.08
LDLR-205ENST00000557933 HSP90AB1P08238 724 aaKnown RBP15.54■□□□□ 0.08
LDLR-205ENST00000557933 CHMP5Q9NZZ3 219 aa15.54■□□□□ 0.08
LDLR-205ENST00000557933 UBR1Q8IWV7 1749 aa15.54■□□□□ 0.08
LDLR-205ENST00000557933 RIPK4P57078 832 aa15.53■□□□□ 0.08
LDLR-205ENST00000557933 ANKRD45Q5TZF3 282 aa15.53■□□□□ 0.08
LDLR-205ENST00000557933 ZNF142P52746 1687 aaPredicted RBP15.53■□□□□ 0.08
LDLR-205ENST00000557933 CHAMP1Q96JM3 812 aa15.52■□□□□ 0.08
LDLR-205ENST00000557933 MINK1Q8N4C8 1332 aaPredicted RBP15.52■□□□□ 0.07
LDLR-205ENST00000557933 HMOX1P09601 288 aa15.52■□□□□ 0.07
LDLR-205ENST00000557933 TNPO1Q92973 898 aaKnown RBP15.52■□□□□ 0.07
LDLR-205ENST00000557933 ATF7IPQ6VMQ6 1270 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 WDR63Q8IWG1 891 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 ATAD2Q6PL18 1390 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 TMPOP42166 694 aaKnown RBP15.51■□□□□ 0.07
LDLR-205ENST00000557933 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.51■□□□□ 0.07
LDLR-205ENST00000557933 ARID3AQ99856 593 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 TRIM35Q9UPQ4 493 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 A2ML1A8K2U0 1454 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 NPC1L1Q9UHC9 1359 aa15.51■□□□□ 0.07
LDLR-205ENST00000557933 GRPEL1Q9HAV7 217 aa15.5■□□□□ 0.07
LDLR-205ENST00000557933 FSD2A1L4K1 749 aa15.49■□□□□ 0.07
LDLR-205ENST00000557933 TPRNQ4KMQ1 711 aa15.49■□□□□ 0.07
LDLR-205ENST00000557933 FOXD4L5Q5VV16 416 aaPredicted RBP15.49■□□□□ 0.07
LDLR-205ENST00000557933 FOXD4L4Q8WXT5 416 aaPredicted RBP15.49■□□□□ 0.07
LDLR-205ENST00000557933 SETD1AO15047 1707 aaKnown RBP15.49■□□□□ 0.07
LDLR-205ENST00000557933 NCLP19338 710 aaKnown RBP15.49■□□□□ 0.07
LDLR-205ENST00000557933 ADGRB1O14514 1584 aa15.48■□□□□ 0.07
LDLR-205ENST00000557933 PHF23Q9BUL5 403 aaPredicted RBP15.48■□□□□ 0.07
LDLR-205ENST00000557933 TNRQ92752 1358 aa15.48■□□□□ 0.07
LDLR-205ENST00000557933 SSFA2P28290 1259 aa15.47■□□□□ 0.07
LDLR-205ENST00000557933 RIMS1Q86UR5 1692 aaKnown RBP15.47■□□□□ 0.07
LDLR-205ENST00000557933 VSIG10Q8N0Z9 540 aa15.47■□□□□ 0.07
LDLR-205ENST00000557933 TSPYL6Q8N831 410 aa15.47■□□□□ 0.07
LDLR-205ENST00000557933 ZNF692Q9BU19 519 aaPredicted RBP15.47■□□□□ 0.07
LDLR-205ENST00000557933 DDX19BQ9UMR2 479 aa15.47■□□□□ 0.07
LDLR-205ENST00000557933 SLIT1O75093 1534 aa15.46■□□□□ 0.07
LDLR-205ENST00000557933 IDI1Q13907 227 aa15.45■□□□□ 0.06
LDLR-205ENST00000557933 NINLQ9Y2I6 1382 aa15.45■□□□□ 0.06
LDLR-205ENST00000557933 TRIM44Q96DX7 344 aaPredicted RBP15.45■□□□□ 0.06
LDLR-205ENST00000557933 ESF1Q9H501 851 aaKnown RBP15.45■□□□□ 0.06
LDLR-205ENST00000557933 ZBTB40Q9NUA8 1239 aa15.44■□□□□ 0.06
LDLR-205ENST00000557933 ARHGAP23Q9P227 1491 aa15.44■□□□□ 0.06
LDLR-205ENST00000557933 CHD1LQ86WJ1 897 aa15.44■□□□□ 0.06
LDLR-205ENST00000557933 PKP1Q13835 747 aa15.44■□□□□ 0.06
LDLR-205ENST00000557933 GAS2L2Q8NHY3 880 aa15.44■□□□□ 0.06
LDLR-205ENST00000557933 ESPNB1AK53 854 aa15.43■□□□□ 0.06
LDLR-205ENST00000557933 DCTN1Q14203 1278 aa15.43■□□□□ 0.06
LDLR-205ENST00000557933 KNDC1Q76NI1 1749 aa15.43■□□□□ 0.06
LDLR-205ENST00000557933 NRXN3Q9Y4C0 1643 aa15.43■□□□□ 0.06
LDLR-205ENST00000557933 MRE11P49959 708 aa15.43■□□□□ 0.06
LDLR-205ENST00000557933 C16orf71Q8IYS4 520 aaPredicted RBP15.43■□□□□ 0.06
LDLR-205ENST00000557933 PHACTR3Q96KR7 559 aa15.43■□□□□ 0.06
LDLR-205ENST00000557933 IQSEC2Q5JU85 1478 aa15.42■□□□□ 0.06
LDLR-205ENST00000557933 PRKAR2BP31323 418 aa15.42■□□□□ 0.06
LDLR-205ENST00000557933 SMC5Q8IY18 1101 aa15.42■□□□□ 0.06
LDLR-205ENST00000557933 SBNO2Q9Y2G9 1366 aa15.42■□□□□ 0.06
LDLR-205ENST00000557933 VIRMAQ69YN4 1812 aaKnown RBP15.42■□□□□ 0.06
LDLR-205ENST00000557933 VGFO15240 615 aaPredicted RBP15.42■□□□□ 0.06
LDLR-205ENST00000557933 FOXD4L6Q3SYB3 417 aaPredicted RBP15.42■□□□□ 0.06
LDLR-205ENST00000557933 FOXD4L3Q6VB84 417 aaPredicted RBP15.42■□□□□ 0.06
LDLR-205ENST00000557933 TBC1D9Q6ZT07 1266 aa15.42■□□□□ 0.06
LDLR-205ENST00000557933 FAM83GA6ND36 823 aa15.41■□□□□ 0.06
LDLR-205ENST00000557933 PLEKHF1Q96S99 279 aa15.41■□□□□ 0.06
LDLR-205ENST00000557933 C14orf93Q9H972 538 aaKnown RBP15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms