RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CLTCL1P53675 1640 aa16.07■□□□□ 0.16
VPS29-208ENST00000550267 PTCH1Q13635 1447 aa16.06■□□□□ 0.16
VPS29-208ENST00000550267 FNBP4Q8N3X1 1017 aaPredicted RBP16.06■□□□□ 0.16
VPS29-208ENST00000550267 ATRNO75882 1429 aa16.05■□□□□ 0.16
VPS29-208ENST00000550267 ROBO2Q9HCK4 1378 aa16.05■□□□□ 0.16
VPS29-208ENST00000550267 COL22A1Q8NFW1 1626 aaPredicted RBP16.02■□□□□ 0.16
VPS29-208ENST00000550267 DCAF8Q5TAQ9 597 aa16.01■□□□□ 0.15
VPS29-208ENST00000550267 TMEM106CQ9BVX2 250 aa16.01■□□□□ 0.15
VPS29-208ENST00000550267 MYOM2P54296 1465 aa16.01■□□□□ 0.15
VPS29-208ENST00000550267 BCL9LQ86UU0 1499 aa15.99■□□□□ 0.15
VPS29-208ENST00000550267 PRAG1Q86YV5 1406 aa15.99■□□□□ 0.15
VPS29-208ENST00000550267 VGFO15240 615 aaPredicted RBP15.98■□□□□ 0.15
VPS29-208ENST00000550267 SRCAPQ6ZRS2 3230 aa15.98■□□□□ 0.15
VPS29-208ENST00000550267 KIF1BO60333 1816 aa15.98■□□□□ 0.15
VPS29-208ENST00000550267 HFM1A2PYH4 1435 aa15.97■□□□□ 0.15
VPS29-208ENST00000550267 ESCO1Q5FWF5 840 aa15.97■□□□□ 0.15
VPS29-208ENST00000550267 CCDC125Q86Z20 511 aa15.97■□□□□ 0.15
VPS29-208ENST00000550267 PXDNQ92626 1479 aa15.97■□□□□ 0.15
VPS29-208ENST00000550267 NPHP3Q7Z494 1330 aa15.96■□□□□ 0.15
VPS29-208ENST00000550267 XPCQ01831 940 aaPredicted RBP15.96■□□□□ 0.15
VPS29-208ENST00000550267 FAM163AQ96GL9 167 aaPredicted RBP15.96■□□□□ 0.15
VPS29-208ENST00000550267 PCDH10Q9P2E7 1040 aa15.96■□□□□ 0.15
VPS29-208ENST00000550267 LCE2DQ5TA82 110 aaPredicted RBP15.95■□□□□ 0.14
VPS29-208ENST00000550267 GJD4Q96KN9 370 aaPredicted RBP15.95■□□□□ 0.14
VPS29-208ENST00000550267 FOXO3O43524 673 aa15.94■□□□□ 0.14
VPS29-208ENST00000550267 PYGBP11216 843 aa15.94■□□□□ 0.14
VPS29-208ENST00000550267 PPARGC1BQ86YN6 1023 aaKnown RBP15.94■□□□□ 0.14
VPS29-208ENST00000550267 CDC42BPGQ6DT37 1551 aa15.94■□□□□ 0.14
VPS29-208ENST00000550267 MARF1Q9Y4F3 1742 aaKnown RBP15.94■□□□□ 0.14
VPS29-208ENST00000550267 RPGRIP1LQ68CZ1 1315 aa15.92■□□□□ 0.14
VPS29-208ENST00000550267 GLI3P10071 1580 aa15.92■□□□□ 0.14
VPS29-208ENST00000550267 NUTM2FA1L443 756 aa15.91■□□□□ 0.14
VPS29-208ENST00000550267 RALGAPBQ86X10 1494 aa15.91■□□□□ 0.14
VPS29-208ENST00000550267 VASPP50552 380 aaPredicted RBP15.9■□□□□ 0.14
VPS29-208ENST00000550267 BLMP54132 1417 aaPredicted RBP15.9■□□□□ 0.14
VPS29-208ENST00000550267 NAIPQ13075 1403 aa15.9■□□□□ 0.14
VPS29-208ENST00000550267 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.9■□□□□ 0.14
VPS29-208ENST00000550267 EP400Q96L91 3159 aa15.9■□□□□ 0.14
VPS29-208ENST00000550267 SLIT2O94813 1529 aa15.89■□□□□ 0.13
VPS29-208ENST00000550267 DEFB132Q7Z7B7 95 aa15.89■□□□□ 0.13
VPS29-208ENST00000550267 UNC5CLQ8IV45 518 aa15.89■□□□□ 0.13
VPS29-208ENST00000550267 PPLO60437 1756 aa15.89■□□□□ 0.13
VPS29-208ENST00000550267 LRPPRCP42704 1394 aaKnown RBP15.88■□□□□ 0.13
VPS29-208ENST00000550267 PLCG2P16885 1265 aa15.88■□□□□ 0.13
VPS29-208ENST00000550267 WAPLQ7Z5K2 1190 aa15.88■□□□□ 0.13
VPS29-208ENST00000550267 IRX5P78411 483 aaPredicted RBP15.87■□□□□ 0.13
VPS29-208ENST00000550267 STK26Q9P289 416 aa15.87■□□□□ 0.13
VPS29-208ENST00000550267 SPATA31A3Q5VYP0 1347 aa15.87■□□□□ 0.13
VPS29-208ENST00000550267 KLHL34Q8N239 644 aa15.86■□□□□ 0.13
VPS29-208ENST00000550267 ADGRF5Q8IZF2 1346 aa15.86■□□□□ 0.13
VPS29-208ENST00000550267 PLEKHH1Q9ULM0 1364 aa15.85■□□□□ 0.13
VPS29-208ENST00000550267 USP32Q8NFA0 1604 aa15.84■□□□□ 0.13
VPS29-208ENST00000550267 GSE1Q14687 1217 aa15.84■□□□□ 0.13
VPS29-208ENST00000550267 SEPT12Q8IYM1 358 aa15.84■□□□□ 0.13
VPS29-208ENST00000550267 BRWD3Q6RI45 1802 aa15.84■□□□□ 0.13
VPS29-208ENST00000550267 TECPR2O15040 1411 aa15.84■□□□□ 0.13
VPS29-208ENST00000550267 SF3B2Q13435 895 aaKnown RBP15.83■□□□□ 0.12
VPS29-208ENST00000550267 KRT28Q7Z3Y7 464 aa15.83■□□□□ 0.12
VPS29-208ENST00000550267 PCDHB8Q9UN66 801 aa15.83■□□□□ 0.12
VPS29-208ENST00000550267 CCDC144AA2RUR9 1427 aa15.83■□□□□ 0.12
VPS29-208ENST00000550267 RRBP1Q9P2E9 1410 aaKnown RBP15.83■□□□□ 0.12
VPS29-208ENST00000550267 TMEM132EQ6IEE7 984 aa15.82■□□□□ 0.12
VPS29-208ENST00000550267 KIF1AQ12756 1690 aa15.82■□□□□ 0.12
VPS29-208ENST00000550267 FMN2Q9NZ56 1722 aa15.82■□□□□ 0.12
VPS29-208ENST00000550267 HAP1P54257 671 aaPredicted RBP15.81■□□□□ 0.12
VPS29-208ENST00000550267 VPS72Q15906 364 aa15.81■□□□□ 0.12
VPS29-208ENST00000550267 CABLES1Q8TDN4 633 aa15.81■□□□□ 0.12
VPS29-208ENST00000550267 OCEL1Q9H607 264 aa15.81■□□□□ 0.12
VPS29-208ENST00000550267 LRP5O75197 1615 aa15.8■□□□□ 0.12
VPS29-208ENST00000550267 ABCC11Q96J66 1382 aa15.8■□□□□ 0.12
VPS29-208ENST00000550267 RGL3Q3MIN7 710 aa15.8■□□□□ 0.12
VPS29-208ENST00000550267 CCDC9Q9Y3X0 531 aaKnown RBP15.8■□□□□ 0.12
VPS29-208ENST00000550267 KNDC1Q76NI1 1749 aa15.8■□□□□ 0.12
VPS29-208ENST00000550267 TNS3Q68CZ2 1445 aa15.78■□□□□ 0.12
VPS29-208ENST00000550267 KRT27Q7Z3Y8 459 aa15.78■□□□□ 0.12
VPS29-208ENST00000550267 SLAIN1Q8ND83 568 aa15.78■□□□□ 0.12
VPS29-208ENST00000550267 PLCH1Q4KWH8 1693 aa15.78■□□□□ 0.12
VPS29-208ENST00000550267 PSDA5PKW4 1024 aaPredicted RBP15.77■□□□□ 0.12
VPS29-208ENST00000550267 ONECUT3O60422 494 aaPredicted RBP15.77■□□□□ 0.12
VPS29-208ENST00000550267 PHF8Q9UPP1 1060 aa15.77■□□□□ 0.12
VPS29-208ENST00000550267 SPATA31E1Q6ZUB1 1445 aa15.77■□□□□ 0.11
VPS29-208ENST00000550267 YTHDC2Q9H6S0 1430 aaKnown RBP15.77■□□□□ 0.11
VPS29-208ENST00000550267 CHRM1P11229 460 aaPredicted RBP15.76■□□□□ 0.11
VPS29-208ENST00000550267 IFT172Q9UG01 1749 aa15.76■□□□□ 0.11
VPS29-208ENST00000550267 NWD2Q9ULI1 1742 aa15.76■□□□□ 0.11
VPS29-208ENST00000550267 ANKRD30BQ9BXX2 1392 aa15.75■□□□□ 0.11
VPS29-208ENST00000550267 PSME1Q06323 249 aa15.75■□□□□ 0.11
VPS29-208ENST00000550267 LMOD2Q6P5Q4 547 aa15.75■□□□□ 0.11
VPS29-208ENST00000550267 ZNF467Q7Z7K2 595 aaPredicted RBP15.75■□□□□ 0.11
VPS29-208ENST00000550267 PIK3C2GO75747 1445 aa15.75■□□□□ 0.11
VPS29-208ENST00000550267 ABCA3Q99758 1704 aa15.74■□□□□ 0.11
VPS29-208ENST00000550267 A0A0G2JS52 829 aa15.74■□□□□ 0.11
VPS29-208ENST00000550267 BAG6P46379 1132 aa15.74■□□□□ 0.11
VPS29-208ENST00000550267 MYT1Q01538 1121 aa15.74■□□□□ 0.11
VPS29-208ENST00000550267 SBNO1A3KN83 1393 aa15.74■□□□□ 0.11
VPS29-208ENST00000550267 NRXN1Q9ULB1 1477 aa15.73■□□□□ 0.11
VPS29-208ENST00000550267 RGPD8O14715 1765 aaPredicted RBP15.73■□□□□ 0.11
VPS29-208ENST00000550267 FAM83GA6ND36 823 aa15.73■□□□□ 0.11
VPS29-208ENST00000550267 HRCP23327 699 aa15.73■□□□□ 0.11
VPS29-208ENST00000550267 FAM98CQ17RN3 349 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms