RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PANK1Q8TE04 598 aa24■■□□□ 1.43
PRPF40B-208ENST00000548436 TNRQ92752 1358 aa24■■□□□ 1.43
PRPF40B-208ENST00000548436 UBR1Q8IWV7 1749 aa24■■□□□ 1.43
PRPF40B-208ENST00000548436 MAP2P11137 1827 aaKnown RBP23.99■■□□□ 1.43
PRPF40B-208ENST00000548436 CANXP27824 592 aaKnown RBP23.99■■□□□ 1.43
PRPF40B-208ENST00000548436 TXNDC2Q86VQ3 553 aa23.99■■□□□ 1.43
PRPF40B-208ENST00000548436 WASLO00401 505 aaPredicted RBP23.98■■□□□ 1.43
PRPF40B-208ENST00000548436 TMPOP42166 694 aaKnown RBP23.98■■□□□ 1.43
PRPF40B-208ENST00000548436 FRAT1Q92837 279 aaPredicted RBP23.98■■□□□ 1.43
PRPF40B-208ENST00000548436 MYH16Q9H6N6 1097 aa23.98■■□□□ 1.43
PRPF40B-208ENST00000548436 DIAPH1O60610 1272 aaKnown RBP23.98■■□□□ 1.43
PRPF40B-208ENST00000548436 COG6Q9Y2V7 657 aa23.97■■□□□ 1.43
PRPF40B-208ENST00000548436 NPM2Q86SE8 214 aaKnown RBP23.96■■□□□ 1.43
PRPF40B-208ENST00000548436 TRIM35Q9UPQ4 493 aa23.96■■□□□ 1.43
PRPF40B-208ENST00000548436 CPSF1Q10570 1443 aaKnown RBP23.96■■□□□ 1.43
PRPF40B-208ENST00000548436 FBLN1P23142 703 aa23.96■■□□□ 1.43
PRPF40B-208ENST00000548436 PPIP5K1Q6PFW1 1433 aa23.95■■□□□ 1.43
PRPF40B-208ENST00000548436 BCL2L13Q9BXK5 485 aa23.95■■□□□ 1.42
PRPF40B-208ENST00000548436 TECPR2O15040 1411 aa23.94■■□□□ 1.42
PRPF40B-208ENST00000548436 MAPK8IP3Q9UPT6 1336 aa23.94■■□□□ 1.42
PRPF40B-208ENST00000548436 IGHDP01880 384 aa23.94■■□□□ 1.42
PRPF40B-208ENST00000548436 HDGFP51858 240 aaKnown RBP23.94■■□□□ 1.42
PRPF40B-208ENST00000548436 FAM135BQ49AJ0 1406 aa23.94■■□□□ 1.42
PRPF40B-208ENST00000548436 CDC42BPGQ6DT37 1551 aa23.94■■□□□ 1.42
PRPF40B-208ENST00000548436 CPS1P31327 1500 aa23.93■■□□□ 1.42
PRPF40B-208ENST00000548436 POLKQ9UBT6 870 aa23.93■■□□□ 1.42
PRPF40B-208ENST00000548436 TMEM2Q9UHN6 1383 aa23.93■■□□□ 1.42
PRPF40B-208ENST00000548436 CLUAP1Q96AJ1 413 aa23.93■■□□□ 1.42
PRPF40B-208ENST00000548436 TNNQ9UQP3 1299 aa23.93■■□□□ 1.42
PRPF40B-208ENST00000548436 EDC4Q6P2E9 1401 aaKnown RBP23.92■■□□□ 1.42
PRPF40B-208ENST00000548436 TSR2Q969E8 191 aaKnown RBP23.92■■□□□ 1.42
PRPF40B-208ENST00000548436 SIRT1Q96EB6 747 aa23.92■■□□□ 1.42
PRPF40B-208ENST00000548436 RLBP1P12271 317 aa23.91■■□□□ 1.42
PRPF40B-208ENST00000548436 NUDT16Q96DE0 195 aaKnown RBP23.91■■□□□ 1.42
PRPF40B-208ENST00000548436 ZBTB47Q9UFB7 747 aaPredicted RBP23.91■■□□□ 1.42
PRPF40B-208ENST00000548436 MON2Q7Z3U7 1717 aa23.91■■□□□ 1.42
PRPF40B-208ENST00000548436 NCKAP5LQ9HCH0 1330 aa23.91■■□□□ 1.42
PRPF40B-208ENST00000548436 LRRC7Q96NW7 1537 aa23.9■■□□□ 1.42
PRPF40B-208ENST00000548436 AKAP12Q02952 1782 aa23.89■■□□□ 1.42
PRPF40B-208ENST00000548436 PPM1GO15355 546 aaPredicted RBP23.89■■□□□ 1.41
PRPF40B-208ENST00000548436 RIPK4P57078 832 aa23.88■■□□□ 1.41
PRPF40B-208ENST00000548436 NME9Q86XW9 330 aa23.88■■□□□ 1.41
PRPF40B-208ENST00000548436 RGS3P49796 1198 aa23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 PNNQ9H307 717 aaKnown RBP23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 ZRANB1Q9UGI0 708 aa23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 ADAMTS13Q76LX8 1427 aa23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 ITSN1Q15811 1721 aa23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 FCHSD2O94868 740 aa23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 EXOSC9Q06265 439 aaKnown RBP23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 CCDC61Q9Y6R9 512 aa23.87■■□□□ 1.41
PRPF40B-208ENST00000548436 CT47B1P0C2W7 299 aaPredicted RBP23.86■■□□□ 1.41
PRPF40B-208ENST00000548436 IL16Q14005 1332 aa23.86■■□□□ 1.41
PRPF40B-208ENST00000548436 ROBO2Q9HCK4 1378 aa23.86■■□□□ 1.41
PRPF40B-208ENST00000548436 RSPH6AQ9H0K4 717 aa23.85■■□□□ 1.41
PRPF40B-208ENST00000548436 C8orf34Q49A92 452 aa23.85■■□□□ 1.41
PRPF40B-208ENST00000548436 EMILIN1Q9Y6C2 1016 aa23.85■■□□□ 1.41
PRPF40B-208ENST00000548436 C3P01024 1663 aa23.84■■□□□ 1.41
PRPF40B-208ENST00000548436 LTKP29376 864 aa23.83■■□□□ 1.41
PRPF40B-208ENST00000548436 FAM161AQ3B820 660 aa23.83■■□□□ 1.41
PRPF40B-208ENST00000548436 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.83■■□□□ 1.41
PRPF40B-208ENST00000548436 PRR36Q9H6K5 1346 aa23.83■■□□□ 1.41
PRPF40B-208ENST00000548436 PRKAR2BP31323 418 aa23.83■■□□□ 1.41
PRPF40B-208ENST00000548436 CEBPAP49715 358 aaPredicted RBP23.82■■□□□ 1.4
PRPF40B-208ENST00000548436 AAMPQ13685 434 aa23.82■■□□□ 1.4
PRPF40B-208ENST00000548436 PCDHB15Q9Y5E8 787 aa23.81■■□□□ 1.4
PRPF40B-208ENST00000548436 CDK12Q9NYV4 1490 aaPredicted RBP23.81■■□□□ 1.4
PRPF40B-208ENST00000548436 AATKQ6ZMQ8 1374 aa23.81■■□□□ 1.4
PRPF40B-208ENST00000548436 PLEKHG1Q9ULL1 1385 aa23.81■■□□□ 1.4
PRPF40B-208ENST00000548436 ZKSCAN2Q63HK3 967 aa23.8■■□□□ 1.4
PRPF40B-208ENST00000548436 HMOX1P09601 288 aa23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 IL13P35225 146 aa23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 VIRMAQ69YN4 1812 aaKnown RBP23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 SSH1Q8WYL5 1049 aa23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 COG3Q96JB2 828 aa23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 PHACTR3Q96KR7 559 aa23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 SMC4Q9NTJ3 1288 aa23.79■■□□□ 1.4
PRPF40B-208ENST00000548436 MVPQ14764 893 aaKnown RBP23.77■■□□□ 1.4
PRPF40B-208ENST00000548436 PMFBP1Q8TBY8 1022 aa23.77■■□□□ 1.4
PRPF40B-208ENST00000548436 DZIP1LQ8IYY4 767 aaKnown RBP23.77■■□□□ 1.4
PRPF40B-208ENST00000548436 ZNF692Q9BU19 519 aaPredicted RBP23.77■■□□□ 1.4
PRPF40B-208ENST00000548436 TOPAZ1Q8N9V7 1692 aa23.76■■□□□ 1.39
PRPF40B-208ENST00000548436 RRS1Q15050 365 aaKnown RBP23.75■■□□□ 1.39
PRPF40B-208ENST00000548436 DLG5Q8TDM6 1919 aa23.75■■□□□ 1.39
PRPF40B-208ENST00000548436 NRKQ7Z2Y5 1582 aa23.75■■□□□ 1.39
PRPF40B-208ENST00000548436 PTPRUQ92729 1446 aa23.74■■□□□ 1.39
PRPF40B-208ENST00000548436 NEFMP07197 916 aa23.74■■□□□ 1.39
PRPF40B-208ENST00000548436 TRIM27P14373 513 aa23.74■■□□□ 1.39
PRPF40B-208ENST00000548436 NFE2L2Q16236 605 aa23.74■■□□□ 1.39
PRPF40B-208ENST00000548436 FTSJ3Q8IY81 847 aaKnown RBP23.74■■□□□ 1.39
PRPF40B-208ENST00000548436 SLC26A8Q96RN1 970 aa23.73■■□□□ 1.39
PRPF40B-208ENST00000548436 NBR1Q14596 966 aa23.72■■□□□ 1.39
PRPF40B-208ENST00000548436 NOB1Q9ULX3 412 aaKnown RBP23.71■■□□□ 1.39
PRPF40B-208ENST00000548436 FER1L4A9Z1Z3 1794 aa23.71■■□□□ 1.39
PRPF40B-208ENST00000548436 ATF7IPQ6VMQ6 1270 aa23.71■■□□□ 1.39
PRPF40B-208ENST00000548436 NUTM2FA1L443 756 aa23.7■■□□□ 1.38
PRPF40B-208ENST00000548436 SLIT1O75093 1534 aa23.7■■□□□ 1.38
PRPF40B-208ENST00000548436 ACEP12821 1306 aa23.7■■□□□ 1.38
PRPF40B-208ENST00000548436 DDRGK1Q96HY6 314 aa23.69■■□□□ 1.38
PRPF40B-208ENST00000548436 THUMPD2Q9BTF0 503 aaKnown RBP23.69■■□□□ 1.38
PRPF40B-208ENST00000548436 ARHGAP23Q9P227 1491 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms