RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 STK26Q9P289 416 aa16.63■□□□□ 0.25
CPSF7-223ENST00000544669 YEATS2Q9ULM3 1422 aa16.63■□□□□ 0.25
CPSF7-223ENST00000544669 DDX19BQ9UMR2 479 aa16.63■□□□□ 0.25
CPSF7-223ENST00000544669 U2SURPO15042 1029 aaKnown RBP16.61■□□□□ 0.25
CPSF7-223ENST00000544669 ANKRD26Q9UPS8 1709 aa16.61■□□□□ 0.25
CPSF7-223ENST00000544669 KIF16BQ96L93 1317 aa16.61■□□□□ 0.25
CPSF7-223ENST00000544669 ATP7BP35670 1465 aa16.61■□□□□ 0.25
CPSF7-223ENST00000544669 ALDH1L2Q3SY69 923 aa16.61■□□□□ 0.25
CPSF7-223ENST00000544669 SIRT1Q96EB6 747 aa16.61■□□□□ 0.25
CPSF7-223ENST00000544669 ALKQ9UM73 1620 aa16.6■□□□□ 0.25
CPSF7-223ENST00000544669 NUTM2DQ5VT03 806 aaPredicted RBP16.6■□□□□ 0.25
CPSF7-223ENST00000544669 CDK19Q9BWU1 502 aa16.6■□□□□ 0.25
CPSF7-223ENST00000544669 LAS1LQ9Y4W2 734 aaKnown RBP16.59■□□□□ 0.25
CPSF7-223ENST00000544669 COL3A1P02461 1466 aaPredicted RBP16.59■□□□□ 0.25
CPSF7-223ENST00000544669 ARHGEF40Q8TER5 1519 aa16.59■□□□□ 0.25
CPSF7-223ENST00000544669 HDAC1Q13547 482 aaPredicted RBP16.59■□□□□ 0.25
CPSF7-223ENST00000544669 GGNBP2Q9H3C7 697 aa16.59■□□□□ 0.25
CPSF7-223ENST00000544669 MINK1Q8N4C8 1332 aaPredicted RBP16.58■□□□□ 0.25
CPSF7-223ENST00000544669 SMC4Q9NTJ3 1288 aa16.58■□□□□ 0.24
CPSF7-223ENST00000544669 BRPF1P55201 1214 aaPredicted RBP16.57■□□□□ 0.24
CPSF7-223ENST00000544669 SAFB2Q14151 953 aaKnown RBP eCLIP16.57■□□□□ 0.24
CPSF7-223ENST00000544669 CDC42BPGQ6DT37 1551 aa16.57■□□□□ 0.24
CPSF7-223ENST00000544669 EIF5BO60841 1220 aaKnown RBP16.56■□□□□ 0.24
CPSF7-223ENST00000544669 RIPK4P57078 832 aa16.56■□□□□ 0.24
CPSF7-223ENST00000544669 ATF7IPQ6VMQ6 1270 aa16.56■□□□□ 0.24
CPSF7-223ENST00000544669 NLRP1Q9C000 1473 aa16.56■□□□□ 0.24
CPSF7-223ENST00000544669 CD163L1Q9NR16 1453 aa16.56■□□□□ 0.24
CPSF7-223ENST00000544669 SKAP1Q86WV1 359 aa16.56■□□□□ 0.24
CPSF7-223ENST00000544669 LMOD3Q0VAK6 560 aa16.55■□□□□ 0.24
CPSF7-223ENST00000544669 TRIM35Q9UPQ4 493 aa16.55■□□□□ 0.24
CPSF7-223ENST00000544669 EXOSC9Q06265 439 aaKnown RBP16.54■□□□□ 0.24
CPSF7-223ENST00000544669 CABP1Q9NZU7 370 aa16.54■□□□□ 0.24
CPSF7-223ENST00000544669 PCDHB15Q9Y5E8 787 aa16.54■□□□□ 0.24
CPSF7-223ENST00000544669 SPATA31D1Q6ZQQ2 1576 aa16.54■□□□□ 0.24
CPSF7-223ENST00000544669 HAP1P54257 671 aaPredicted RBP16.54■□□□□ 0.24
CPSF7-223ENST00000544669 NFKBIBQ15653 356 aa16.54■□□□□ 0.24
CPSF7-223ENST00000544669 PDZRN3Q9UPQ7 1066 aa16.54■□□□□ 0.24
CPSF7-223ENST00000544669 PPIP5K1Q6PFW1 1433 aa16.53■□□□□ 0.24
CPSF7-223ENST00000544669 RLBP1P12271 317 aa16.53■□□□□ 0.24
CPSF7-223ENST00000544669 FAM69CQ0P6D2 419 aa16.53■□□□□ 0.24
CPSF7-223ENST00000544669 ARHGAP45Q92619 1136 aa16.53■□□□□ 0.24
CPSF7-223ENST00000544669 RIMS2Q9UQ26 1411 aa16.53■□□□□ 0.24
CPSF7-223ENST00000544669 VIRMAQ69YN4 1812 aaKnown RBP16.53■□□□□ 0.24
CPSF7-223ENST00000544669 AATKQ6ZMQ8 1374 aa16.53■□□□□ 0.24
CPSF7-223ENST00000544669 A2ML1A8K2U0 1454 aa16.52■□□□□ 0.24
CPSF7-223ENST00000544669 EDC4Q6P2E9 1401 aaKnown RBP16.52■□□□□ 0.24
CPSF7-223ENST00000544669 GSE1Q14687 1217 aa16.52■□□□□ 0.23
CPSF7-223ENST00000544669 ZNF692Q9BU19 519 aaPredicted RBP16.52■□□□□ 0.23
CPSF7-223ENST00000544669 FAM135BQ49AJ0 1406 aa16.51■□□□□ 0.23
CPSF7-223ENST00000544669 FBXO31Q5XUX0 539 aaPredicted RBP16.51■□□□□ 0.23
CPSF7-223ENST00000544669 ESF1Q9H501 851 aaKnown RBP16.51■□□□□ 0.23
CPSF7-223ENST00000544669 GNAI1P63096 354 aa16.5■□□□□ 0.23
CPSF7-223ENST00000544669 SSH1Q8WYL5 1049 aa16.5■□□□□ 0.23
CPSF7-223ENST00000544669 TRIM27P14373 513 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 BCL2L13Q9BXK5 485 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 WASLO00401 505 aaPredicted RBP16.49■□□□□ 0.23
CPSF7-223ENST00000544669 NFE2L2Q16236 605 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 ITPRIPQ8IWB1 547 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 SMC5Q8IY18 1101 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 CFAP44Q96MT7 982 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 KIF20BQ96Q89 1820 aa16.49■□□□□ 0.23
CPSF7-223ENST00000544669 TSR2Q969E8 191 aaKnown RBP16.48■□□□□ 0.23
CPSF7-223ENST00000544669 TBC1D32Q96NH3 1257 aa16.48■□□□□ 0.23
CPSF7-223ENST00000544669 CPSF1Q10570 1443 aaKnown RBP16.48■□□□□ 0.23
CPSF7-223ENST00000544669 USP19O94966 1318 aa16.48■□□□□ 0.23
CPSF7-223ENST00000544669 DIP2BQ9P265 1576 aa16.47■□□□□ 0.23
CPSF7-223ENST00000544669 CYB5RLQ6IPT4 315 aa16.47■□□□□ 0.23
CPSF7-223ENST00000544669 RSPH6AQ9H0K4 717 aa16.47■□□□□ 0.23
CPSF7-223ENST00000544669 IFT57Q9NWB7 429 aa16.47■□□□□ 0.23
CPSF7-223ENST00000544669 POLKQ9UBT6 870 aa16.47■□□□□ 0.23
CPSF7-223ENST00000544669 NOB1Q9ULX3 412 aaKnown RBP16.47■□□□□ 0.23
CPSF7-223ENST00000544669 MYO5BQ9ULV0 1848 aa16.47■□□□□ 0.23
CPSF7-223ENST00000544669 ZBTB40Q9NUA8 1239 aa16.46■□□□□ 0.23
CPSF7-223ENST00000544669 CCDC61Q9Y6R9 512 aa16.46■□□□□ 0.23
CPSF7-223ENST00000544669 CDK12Q9NYV4 1490 aaPredicted RBP16.46■□□□□ 0.22
CPSF7-223ENST00000544669 PRKAR2BP31323 418 aa16.45■□□□□ 0.22
CPSF7-223ENST00000544669 COG3Q96JB2 828 aa16.45■□□□□ 0.22
CPSF7-223ENST00000544669 TECPR2O15040 1411 aa16.45■□□□□ 0.22
CPSF7-223ENST00000544669 GCC1Q96CN9 775 aa16.45■□□□□ 0.22
CPSF7-223ENST00000544669 KIF24Q5T7B8 1368 aa16.44■□□□□ 0.22
CPSF7-223ENST00000544669 SLC4A3P48751 1232 aa16.43■□□□□ 0.22
CPSF7-223ENST00000544669 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.42■□□□□ 0.22
CPSF7-223ENST00000544669 API5Q9BZZ5 524 aaKnown RBP16.42■□□□□ 0.22
CPSF7-223ENST00000544669 IL13P35225 146 aa16.41■□□□□ 0.22
CPSF7-223ENST00000544669 TMEM57Q8N5G2 664 aa16.41■□□□□ 0.22
CPSF7-223ENST00000544669 PIK3R4Q99570 1358 aa16.41■□□□□ 0.22
CPSF7-223ENST00000544669 NUCB1Q02818 461 aa16.4■□□□□ 0.22
CPSF7-223ENST00000544669 NUDT16Q96DE0 195 aaKnown RBP16.4■□□□□ 0.22
CPSF7-223ENST00000544669 TNNQ9UQP3 1299 aa16.4■□□□□ 0.22
CPSF7-223ENST00000544669 LRRC7Q96NW7 1537 aa16.4■□□□□ 0.22
CPSF7-223ENST00000544669 WAPLQ7Z5K2 1190 aa16.4■□□□□ 0.22
CPSF7-223ENST00000544669 SEC24BO95487 1268 aa16.39■□□□□ 0.21
CPSF7-223ENST00000544669 ZNF853P0CG23 659 aa16.39■□□□□ 0.21
CPSF7-223ENST00000544669 KNDC1Q76NI1 1749 aa16.39■□□□□ 0.21
CPSF7-223ENST00000544669 C22orf23Q9BZE7 217 aa16.39■□□□□ 0.21
CPSF7-223ENST00000544669 SETD1AO15047 1707 aaKnown RBP16.38■□□□□ 0.21
CPSF7-223ENST00000544669 VAMP4O75379 141 aa16.38■□□□□ 0.21
CPSF7-223ENST00000544669 PTCH1Q13635 1447 aa16.38■□□□□ 0.21
CPSF7-223ENST00000544669 RIMBP3CA6NJZ7 1639 aa16.37■□□□□ 0.21
CPSF7-223ENST00000544669 RIMBP3BA6NNM3 1639 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms