RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PLEKHF1Q96S99 279 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 KNDC1Q76NI1 1749 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 ZRANB1Q9UGI0 708 aa21.21■□□□□ 0.99
COL4A1-204ENST00000543140 TECPR2O15040 1411 aa21.21■□□□□ 0.99
COL4A1-204ENST00000543140 POLKQ9UBT6 870 aa21.2■□□□□ 0.98
COL4A1-204ENST00000543140 CCDC61Q9Y6R9 512 aa21.2■□□□□ 0.98
COL4A1-204ENST00000543140 CPSF1Q10570 1443 aaKnown RBP21.2■□□□□ 0.98
COL4A1-204ENST00000543140 SIRT1Q96EB6 747 aa21.2■□□□□ 0.98
COL4A1-204ENST00000543140 MAPK8IP3Q9UPT6 1336 aa21.19■□□□□ 0.98
COL4A1-204ENST00000543140 MAP2P11137 1827 aaKnown RBP21.19■□□□□ 0.98
COL4A1-204ENST00000543140 CPS1P31327 1500 aa21.19■□□□□ 0.98
COL4A1-204ENST00000543140 NUTM2FA1L443 756 aa21.19■□□□□ 0.98
COL4A1-204ENST00000543140 CANXP27824 592 aaKnown RBP21.19■□□□□ 0.98
COL4A1-204ENST00000543140 C3P01024 1663 aa21.19■□□□□ 0.98
COL4A1-204ENST00000543140 FRAT1Q92837 279 aaPredicted RBP21.19■□□□□ 0.98
COL4A1-204ENST00000543140 ADGRB2O60241 1585 aa21.19■□□□□ 0.98
COL4A1-204ENST00000543140 TMPOP42166 694 aaKnown RBP21.18■□□□□ 0.98
COL4A1-204ENST00000543140 PNPLA6Q8IY17 1366 aa21.18■□□□□ 0.98
COL4A1-204ENST00000543140 TCERG1O14776 1098 aaKnown RBP21.18■□□□□ 0.98
COL4A1-204ENST00000543140 EDC4Q6P2E9 1401 aaKnown RBP21.18■□□□□ 0.98
COL4A1-204ENST00000543140 PRR36Q9H6K5 1346 aa21.18■□□□□ 0.98
COL4A1-204ENST00000543140 BCL2L13Q9BXK5 485 aa21.17■□□□□ 0.98
COL4A1-204ENST00000543140 EID1Q9Y6B2 187 aa21.17■□□□□ 0.98
COL4A1-204ENST00000543140 PLEKHG1Q9ULL1 1385 aa21.17■□□□□ 0.98
COL4A1-204ENST00000543140 RARSP54136 660 aaKnown RBP21.16■□□□□ 0.98
COL4A1-204ENST00000543140 EMILIN1Q9Y6C2 1016 aa21.16■□□□□ 0.98
COL4A1-204ENST00000543140 PANK1Q8TE04 598 aa21.16■□□□□ 0.98
COL4A1-204ENST00000543140 ANP32EQ9BTT0 268 aa21.16■□□□□ 0.98
COL4A1-204ENST00000543140 MYH16Q9H6N6 1097 aa21.16■□□□□ 0.98
COL4A1-204ENST00000543140 TSR2Q969E8 191 aaKnown RBP21.15■□□□□ 0.98
COL4A1-204ENST00000543140 TRIM35Q9UPQ4 493 aa21.15■□□□□ 0.98
COL4A1-204ENST00000543140 KDM2BQ8NHM5 1336 aa21.15■□□□□ 0.98
COL4A1-204ENST00000543140 FER1L4A9Z1Z3 1794 aa21.15■□□□□ 0.98
COL4A1-204ENST00000543140 CDC42BPGQ6DT37 1551 aa21.14■□□□□ 0.97
COL4A1-204ENST00000543140 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.14■□□□□ 0.97
COL4A1-204ENST00000543140 RIPK4P57078 832 aa21.13■□□□□ 0.97
COL4A1-204ENST00000543140 NCBP3Q53F19 620 aaKnown RBP21.13■□□□□ 0.97
COL4A1-204ENST00000543140 COG6Q9Y2V7 657 aa21.13■□□□□ 0.97
COL4A1-204ENST00000543140 CENPQQ7L2Z9 268 aaPredicted RBP21.12■□□□□ 0.97
COL4A1-204ENST00000543140 PDE3AQ14432 1141 aa21.12■□□□□ 0.97
COL4A1-204ENST00000543140 COG3Q96JB2 828 aa21.12■□□□□ 0.97
COL4A1-204ENST00000543140 PTPRUQ92729 1446 aa21.11■□□□□ 0.97
COL4A1-204ENST00000543140 HMOX1P09601 288 aa21.11■□□□□ 0.97
COL4A1-204ENST00000543140 ITSN1Q15811 1721 aa21.11■□□□□ 0.97
COL4A1-204ENST00000543140 MON2Q7Z3U7 1717 aa21.11■□□□□ 0.97
COL4A1-204ENST00000543140 PRKAR2BP31323 418 aa21.11■□□□□ 0.97
COL4A1-204ENST00000543140 RRS1Q15050 365 aaKnown RBP21.11■□□□□ 0.97
COL4A1-204ENST00000543140 TNNQ9UQP3 1299 aa21.1■□□□□ 0.97
COL4A1-204ENST00000543140 FCHSD2O94868 740 aa21.1■□□□□ 0.97
COL4A1-204ENST00000543140 PDE4AP27815 886 aa21.1■□□□□ 0.97
COL4A1-204ENST00000543140 AMOTL2Q9Y2J4 779 aa21.1■□□□□ 0.97
COL4A1-204ENST00000543140 AKAP12Q02952 1782 aa21.1■□□□□ 0.97
COL4A1-204ENST00000543140 PNNQ9H307 717 aaKnown RBP21.09■□□□□ 0.97
COL4A1-204ENST00000543140 LRRC7Q96NW7 1537 aa21.09■□□□□ 0.97
COL4A1-204ENST00000543140 ZNF692Q9BU19 519 aaPredicted RBP21.09■□□□□ 0.97
COL4A1-204ENST00000543140 RSPH6AQ9H0K4 717 aa21.09■□□□□ 0.97
COL4A1-204ENST00000543140 MS4A1P11836 297 aa21.08■□□□□ 0.96
COL4A1-204ENST00000543140 EXOSC9Q06265 439 aaKnown RBP21.08■□□□□ 0.96
COL4A1-204ENST00000543140 ACEP12821 1306 aa21.07■□□□□ 0.96
COL4A1-204ENST00000543140 THEMISQ8N1K5 641 aaPredicted RBP21.07■□□□□ 0.96
COL4A1-204ENST00000543140 CLUAP1Q96AJ1 413 aa21.07■□□□□ 0.96
COL4A1-204ENST00000543140 PHACTR3Q96KR7 559 aa21.07■□□□□ 0.96
COL4A1-204ENST00000543140 SLIT1O75093 1534 aa21.06■□□□□ 0.96
COL4A1-204ENST00000543140 RLBP1P12271 317 aa21.06■□□□□ 0.96
COL4A1-204ENST00000543140 ARHGAP23Q9P227 1491 aa21.05■□□□□ 0.96
COL4A1-204ENST00000543140 NEFMP07197 916 aa21.05■□□□□ 0.96
COL4A1-204ENST00000543140 IL13P35225 146 aa21.05■□□□□ 0.96
COL4A1-204ENST00000543140 BACH2Q9BYV9 841 aa21.05■□□□□ 0.96
COL4A1-204ENST00000543140 ANP32AP39687 249 aaKnown RBP21.04■□□□□ 0.96
COL4A1-204ENST00000543140 ERICH6Q7L0X2 663 aa21.04■□□□□ 0.96
COL4A1-204ENST00000543140 NPM2Q86SE8 214 aaKnown RBP21.04■□□□□ 0.96
COL4A1-204ENST00000543140 TBX22Q9Y458 520 aa21.04■□□□□ 0.96
COL4A1-204ENST00000543140 AATKQ6ZMQ8 1374 aa21.03■□□□□ 0.96
COL4A1-204ENST00000543140 IGHDP01880 384 aa21.03■□□□□ 0.96
COL4A1-204ENST00000543140 TTC21BQ7Z4L5 1316 aa21.03■□□□□ 0.96
COL4A1-204ENST00000543140 CDK12Q9NYV4 1490 aaPredicted RBP21.03■□□□□ 0.96
COL4A1-204ENST00000543140 PMFBP1Q8TBY8 1022 aa21.02■□□□□ 0.95
COL4A1-204ENST00000543140 LAS1LQ9Y4W2 734 aaKnown RBP21.02■□□□□ 0.95
COL4A1-204ENST00000543140 RGS3P49796 1198 aa21.01■□□□□ 0.95
COL4A1-204ENST00000543140 PLEKHG3A1L390 1219 aa21.01■□□□□ 0.95
COL4A1-204ENST00000543140 THUMPD2Q9BTF0 503 aaKnown RBP21.01■□□□□ 0.95
COL4A1-204ENST00000543140 SMC4Q9NTJ3 1288 aa21.01■□□□□ 0.95
COL4A1-204ENST00000543140 IL16Q14005 1332 aa21.01■□□□□ 0.95
COL4A1-204ENST00000543140 TOPAZ1Q8N9V7 1692 aa21■□□□□ 0.95
COL4A1-204ENST00000543140 SOX12O15370 315 aa21■□□□□ 0.95
COL4A1-204ENST00000543140 NFE2L2Q16236 605 aa20.99■□□□□ 0.95
COL4A1-204ENST00000543140 SSH1Q8WYL5 1049 aa20.99■□□□□ 0.95
COL4A1-204ENST00000543140 USP6P35125 1406 aa20.98■□□□□ 0.95
COL4A1-204ENST00000543140 CT47B1P0C2W7 299 aaPredicted RBP20.98■□□□□ 0.95
COL4A1-204ENST00000543140 ZKSCAN2Q63HK3 967 aa20.98■□□□□ 0.95
COL4A1-204ENST00000543140 RGPD8O14715 1765 aaPredicted RBP20.97■□□□□ 0.95
COL4A1-204ENST00000543140 NRKQ7Z2Y5 1582 aa20.97■□□□□ 0.95
COL4A1-204ENST00000543140 FTSJ3Q8IY81 847 aaKnown RBP20.96■□□□□ 0.95
COL4A1-204ENST00000543140 IPO9Q96P70 1041 aaKnown RBP20.96■□□□□ 0.95
COL4A1-204ENST00000543140 KCNA6P17658 529 aa20.95■□□□□ 0.94
COL4A1-204ENST00000543140 PAK3O75914 559 aaPredicted RBP20.95■□□□□ 0.94
COL4A1-204ENST00000543140 PTCH1Q13635 1447 aa20.95■□□□□ 0.94
COL4A1-204ENST00000543140 NGDNQ8NEJ9 315 aaKnown RBP20.95■□□□□ 0.94
COL4A1-204ENST00000543140 PCDHB15Q9Y5E8 787 aa20.95■□□□□ 0.94
COL4A1-204ENST00000543140 DZIP1LQ8IYY4 767 aaKnown RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms