RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 CERKQ8TCT0 537 aa21.36■■□□□ 1.01
NUP54-214ENST00000514307 CDC42BPGQ6DT37 1551 aa21.36■■□□□ 1.01
NUP54-214ENST00000514307 TMEM94Q12767 1356 aa21.36■■□□□ 1.01
NUP54-214ENST00000514307 NME9Q86XW9 330 aa21.34■■□□□ 1.01
NUP54-214ENST00000514307 NUDCQ9Y266 331 aa21.34■■□□□ 1.01
NUP54-214ENST00000514307 USP6P35125 1406 aa21.32■■□□□ 1
NUP54-214ENST00000514307 STRCP1A6NGW2 1772 aa21.32■■□□□ 1
NUP54-214ENST00000514307 FBXO41Q8TF61 875 aa21.31■■□□□ 1
NUP54-214ENST00000514307 ADAMTS8Q9UP79 889 aa21.31■■□□□ 1
NUP54-214ENST00000514307 MSH6P52701 1360 aa21.31■■□□□ 1
NUP54-214ENST00000514307 DCCP43146 1447 aa21.29■■□□□ 1
NUP54-214ENST00000514307 PAK3O75914 559 aaPredicted RBP21.28■■□□□ 1
NUP54-214ENST00000514307 AATKQ6ZMQ8 1374 aa21.27■■□□□ 1
NUP54-214ENST00000514307 PNNQ9H307 717 aaKnown RBP21.27■■□□□ 1
NUP54-214ENST00000514307 SSH2Q76I76 1423 aa21.27■■□□□ 1
NUP54-214ENST00000514307 ZBED9Q6R2W3 1325 aa21.27■□□□□ 0.99
NUP54-214ENST00000514307 NLRP6P59044 892 aa21.26■□□□□ 0.99
NUP54-214ENST00000514307 NGEFQ8N5V2 710 aa21.26■□□□□ 0.99
NUP54-214ENST00000514307 ABTB2Q8N961 1025 aa21.26■□□□□ 0.99
NUP54-214ENST00000514307 ORAI2Q96SN7 254 aa21.26■□□□□ 0.99
NUP54-214ENST00000514307 POLKQ9UBT6 870 aa21.26■□□□□ 0.99
NUP54-214ENST00000514307 FMN2Q9NZ56 1722 aa21.26■□□□□ 0.99
NUP54-214ENST00000514307 ZRANB1Q9UGI0 708 aa21.25■□□□□ 0.99
NUP54-214ENST00000514307 USP31Q70CQ4 1352 aa21.24■□□□□ 0.99
NUP54-214ENST00000514307 DIAPH1O60610 1272 aaKnown RBP21.24■□□□□ 0.99
NUP54-214ENST00000514307 ITSN1Q15811 1721 aa21.24■□□□□ 0.99
NUP54-214ENST00000514307 PPM1GO15355 546 aaPredicted RBP21.23■□□□□ 0.99
NUP54-214ENST00000514307 FOXO3O43524 673 aa21.23■□□□□ 0.99
NUP54-214ENST00000514307 KRT28Q7Z3Y7 464 aa21.23■□□□□ 0.99
NUP54-214ENST00000514307 TOPAZ1Q8N9V7 1692 aa21.22■□□□□ 0.99
NUP54-214ENST00000514307 C1orf167Q5SNV9 1468 aa21.22■□□□□ 0.99
NUP54-214ENST00000514307 NALCNQ8IZF0 1738 aa21.21■□□□□ 0.99
NUP54-214ENST00000514307 SLAIN2Q9P270 581 aa21.2■□□□□ 0.98
NUP54-214ENST00000514307 PNPLA6Q8IY17 1366 aa21.2■□□□□ 0.98
NUP54-214ENST00000514307 AKAP12Q02952 1782 aa21.19■□□□□ 0.98
NUP54-214ENST00000514307 U2AF1L5P0DN76 240 aaPredicted RBP21.19■□□□□ 0.98
NUP54-214ENST00000514307 U2AF1Q01081 240 aaKnown RBP eCLIP21.19■□□□□ 0.98
NUP54-214ENST00000514307 PDE3BQ13370 1112 aa21.19■□□□□ 0.98
NUP54-214ENST00000514307 LRRC7Q96NW7 1537 aa21.19■□□□□ 0.98
NUP54-214ENST00000514307 KCNH5Q8NCM2 988 aa21.18■□□□□ 0.98
NUP54-214ENST00000514307 RUNDC1Q96C34 613 aa21.18■□□□□ 0.98
NUP54-214ENST00000514307 MON2Q7Z3U7 1717 aa21.18■□□□□ 0.98
NUP54-214ENST00000514307 U2SURPO15042 1029 aaKnown RBP21.17■□□□□ 0.98
NUP54-214ENST00000514307 MST1RQ04912 1400 aa21.16■□□□□ 0.98
NUP54-214ENST00000514307 NPHP3Q7Z494 1330 aa21.16■□□□□ 0.98
NUP54-214ENST00000514307 XIRP1Q702N8 1843 aaKnown RBP21.15■□□□□ 0.98
NUP54-214ENST00000514307 IQSEC2Q5JU85 1478 aa21.15■□□□□ 0.98
NUP54-214ENST00000514307 NEFMP07197 916 aa21.15■□□□□ 0.98
NUP54-214ENST00000514307 EMILIN1Q9Y6C2 1016 aa21.15■□□□□ 0.98
NUP54-214ENST00000514307 OVOS2A0A0J9YW53 1432 aa21.14■□□□□ 0.98
NUP54-214ENST00000514307 BLMP54132 1417 aaPredicted RBP21.14■□□□□ 0.98
NUP54-214ENST00000514307 OVOS2Q6IE36 1432 aa21.14■□□□□ 0.98
NUP54-214ENST00000514307 FCHSD2O94868 740 aa21.14■□□□□ 0.97
NUP54-214ENST00000514307 FBLN1P23142 703 aa21.14■□□□□ 0.97
NUP54-214ENST00000514307 RRS1Q15050 365 aaKnown RBP21.14■□□□□ 0.97
NUP54-214ENST00000514307 NCBP3Q53F19 620 aaKnown RBP21.14■□□□□ 0.97
NUP54-214ENST00000514307 AMPHP49418 695 aa21.13■□□□□ 0.97
NUP54-214ENST00000514307 KIF20BQ96Q89 1820 aa21.13■□□□□ 0.97
NUP54-214ENST00000514307 ANKRD26Q9UPS8 1709 aa21.12■□□□□ 0.97
NUP54-214ENST00000514307 NUTM2GQ5VZR2 741 aa21.12■□□□□ 0.97
NUP54-214ENST00000514307 LMOD2Q6P5Q4 547 aa21.12■□□□□ 0.97
NUP54-214ENST00000514307 KIF24Q5T7B8 1368 aa21.1■□□□□ 0.97
NUP54-214ENST00000514307 APAF1O14727 1248 aa21.1■□□□□ 0.97
NUP54-214ENST00000514307 IL13P35225 146 aa21.1■□□□□ 0.97
NUP54-214ENST00000514307 CCDC146Q8IYE0 955 aa21.1■□□□□ 0.97
NUP54-214ENST00000514307 SALL2Q9Y467 1007 aaPredicted RBP21.1■□□□□ 0.97
NUP54-214ENST00000514307 RGPD8O14715 1765 aaPredicted RBP21.1■□□□□ 0.97
NUP54-214ENST00000514307 SOX12O15370 315 aa21.09■□□□□ 0.97
NUP54-214ENST00000514307 XPCQ01831 940 aaPredicted RBP21.09■□□□□ 0.97
NUP54-214ENST00000514307 SMG6Q86US8 1419 aaKnown RBP21.09■□□□□ 0.97
NUP54-214ENST00000514307 SBNO1A3KN83 1393 aa21.09■□□□□ 0.97
NUP54-214ENST00000514307 BRINP3Q76B58 766 aa21.08■□□□□ 0.97
NUP54-214ENST00000514307 UBAP1LF5GYI3 381 aa21.07■□□□□ 0.96
NUP54-214ENST00000514307 MAP3K19Q56UN5 1328 aa21.06■□□□□ 0.96
NUP54-214ENST00000514307 MAPK8IP3Q9UPT6 1336 aa21.06■□□□□ 0.96
NUP54-214ENST00000514307 NRKQ7Z2Y5 1582 aa21.06■□□□□ 0.96
NUP54-214ENST00000514307 TCP11L2Q8N4U5 519 aa21.06■□□□□ 0.96
NUP54-214ENST00000514307 CDK12Q9NYV4 1490 aaPredicted RBP21.06■□□□□ 0.96
NUP54-214ENST00000514307 KIF1AQ12756 1690 aa21.05■□□□□ 0.96
NUP54-214ENST00000514307 GCP02774 474 aa21.05■□□□□ 0.96
NUP54-214ENST00000514307 HSP90AB2PQ58FF8 381 aa21.04■□□□□ 0.96
NUP54-214ENST00000514307 FLT4P35916 1363 aa21.04■□□□□ 0.96
NUP54-214ENST00000514307 GOLGA2Q08379 1002 aa21.03■□□□□ 0.96
NUP54-214ENST00000514307 IP6K1Q92551 441 aa21.03■□□□□ 0.96
NUP54-214ENST00000514307 COL3A1P02461 1466 aaPredicted RBP21.02■□□□□ 0.96
NUP54-214ENST00000514307 EIF4A2Q14240 407 aaKnown RBP21.02■□□□□ 0.96
NUP54-214ENST00000514307 CCDC27Q2M243 656 aa21.02■□□□□ 0.96
NUP54-214ENST00000514307 PLEKHF1Q96S99 279 aa21.02■□□□□ 0.96
NUP54-214ENST00000514307 ARHGEF10O15013 1369 aa21.01■□□□□ 0.95
NUP54-214ENST00000514307 SENP3-EIF4A1A0A087X0R7 540 aa21.01■□□□□ 0.95
NUP54-214ENST00000514307 SPATA31A3Q5VYP0 1347 aa21.01■□□□□ 0.95
NUP54-214ENST00000514307 HOXC9P31274 260 aa21■□□□□ 0.95
NUP54-214ENST00000514307 PIP4K2BP78356 416 aa21■□□□□ 0.95
NUP54-214ENST00000514307 WDR63Q8IWG1 891 aa21■□□□□ 0.95
NUP54-214ENST00000514307 DDX17Q92841 729 aaKnown RBP20.99■□□□□ 0.95
NUP54-214ENST00000514307 RSPH6AQ9H0K4 717 aa20.99■□□□□ 0.95
NUP54-214ENST00000514307 USP19O94966 1318 aa20.99■□□□□ 0.95
NUP54-214ENST00000514307 SOS2Q07890 1332 aaPredicted RBP20.99■□□□□ 0.95
NUP54-214ENST00000514307 PRKAR2BP31323 418 aa20.98■□□□□ 0.95
NUP54-214ENST00000514307 ARHGEF25Q86VW2 580 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms