RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 KCNF1Q9H3M0 494 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 IFT57Q9NWB7 429 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 RAD54L2Q9Y4B4 1467 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 MAGI3Q5TCQ9 1506 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 ANKRD65E5RJM6 399 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 TRIM66O15016 1216 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 TNNT1P13805 278 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 HMGN5P82970 282 aaKnown RBP8.83□□□□□ -1
LIMCH1-207ENST00000508466 CHAF1AQ13111 956 aaPredicted RBP8.83□□□□□ -1
LIMCH1-207ENST00000508466 FGD5Q6ZNL6 1462 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 FYCO1Q9BQS8 1478 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 KDM5CP41229 1560 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 U2AF1L5P0DN76 240 aaPredicted RBP8.83□□□□□ -1
LIMCH1-207ENST00000508466 HNRNPH2P55795 449 aaKnown RBP8.83□□□□□ -1
LIMCH1-207ENST00000508466 U2AF1Q01081 240 aaKnown RBP eCLIP8.83□□□□□ -1
LIMCH1-207ENST00000508466 NEK11Q8NG66 645 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 PRIMPOLQ96LW4 560 aa8.83□□□□□ -1
LIMCH1-207ENST00000508466 NEK4P51957 841 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 TERF2Q15554 542 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 GPATCH11Q8N954 259 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 RGS22Q8NE09 1264 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 ABCA5Q8WWZ7 1642 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 PTMSP20962 102 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 CAMK4Q16566 473 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 C10orf67Q8IYJ2 551 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 UPF3BQ9BZI7 483 aaKnown RBP8.82□□□□□ -1
LIMCH1-207ENST00000508466 SLC52A1Q9NWF4 448 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 CTNNA3Q9UI47 895 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 TDRD9Q8NDG6 1382 aaKnown RBP8.82□□□□□ -1
LIMCH1-207ENST00000508466 HNRNPMP52272 730 aaKnown RBP eCLIP8.82□□□□□ -1
LIMCH1-207ENST00000508466 USP48Q86UV5 1035 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 TRMT1Q9NXH9 659 aaKnown RBP8.82□□□□□ -1
LIMCH1-207ENST00000508466 OGFRQ9NZT2 677 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 RSPH14Q9UHP6 348 aa8.82□□□□□ -1
LIMCH1-207ENST00000508466 ABCC5O15440 1437 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 RSPH4AQ5TD94 716 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 FBXW7Q969H0 707 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 ZCCHC17Q9NP64 241 aaKnown RBP8.81□□□□□ -1
LIMCH1-207ENST00000508466 MCM5P33992 734 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 NUCB2P80303 420 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 FKBP5Q13451 457 aaPredicted RBP8.81□□□□□ -1
LIMCH1-207ENST00000508466 CARD14Q9BXL6 1004 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 PZPP20742 1482 aa8.81□□□□□ -1
LIMCH1-207ENST00000508466 THOC2Q8NI27 1593 aaKnown RBP8.8□□□□□ -1
LIMCH1-207ENST00000508466 KIAA1107Q9UPP5 1409 aa8.8□□□□□ -1
LIMCH1-207ENST00000508466 NUCB1Q02818 461 aa8.8□□□□□ -1
LIMCH1-207ENST00000508466 CDK13Q14004 1512 aaKnown RBP8.8□□□□□ -1
LIMCH1-207ENST00000508466 NCOA3Q9Y6Q9 1424 aa8.8□□□□□ -1
LIMCH1-207ENST00000508466 FIBPO43427 364 aa8.8□□□□□ -1
LIMCH1-207ENST00000508466 ARID5BQ14865 1188 aa8.8□□□□□ -1
LIMCH1-207ENST00000508466 DDX54Q8TDD1 881 aaKnown RBP8.8□□□□□ -1
LIMCH1-207ENST00000508466 THUMPD2Q9BTF0 503 aaKnown RBP8.8□□□□□ -1
LIMCH1-207ENST00000508466 MAGI2Q86UL8 1455 aa8.8□□□□□ -1
LIMCH1-207ENST00000508466 EFCAB5A4FU69 1503 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 GSPT1P15170 499 aaKnown RBP8.79□□□□□ -1
LIMCH1-207ENST00000508466 PPP4R3CPQ6ZMV5 832 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 DNAJC2Q99543 621 aaKnown RBP8.79□□□□□ -1
LIMCH1-207ENST00000508466 LCMT1Q9UIC8 334 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 CNPY2Q9Y2B0 182 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 CFAP43Q8NDM7 1665 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 INSRP06213 1382 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 A0A087WWV3 80 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 APPP05067 770 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 KMT5BQ4FZB7 885 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 GORABQ5T7V8 394 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 CCDC186Q7Z3E2 898 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 KCNG1Q9UIX4 513 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 DAPK1P53355 1430 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 ANKRD7Q92527 254 aa8.79□□□□□ -1
LIMCH1-207ENST00000508466 FBLN1P23142 703 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 MTHFSP49914 203 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 ELF2Q15723 593 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 MORC1Q86VD1 984 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 KIAA1524Q8TCG1 905 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 ZNF608Q9ULD9 1512 aaPredicted RBP8.78□□□□□ -1
LIMCH1-207ENST00000508466 SART3Q15020 963 aaKnown RBP8.78□□□□□ -1
LIMCH1-207ENST00000508466 ATF7IPQ6VMQ6 1270 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 KIF18AQ8NI77 898 aa8.78□□□□□ -1
LIMCH1-207ENST00000508466 FEZ2Q9UHY8 353 aaPredicted RBP8.78□□□□□ -1
LIMCH1-207ENST00000508466 ERBINQ96RT1 1412 aa8.77□□□□□ -1
LIMCH1-207ENST00000508466 USP27XA6NNY8 438 aa8.77□□□□□ -1
LIMCH1-207ENST00000508466 TPD52L1Q16890 204 aaPredicted RBP8.77□□□□□ -1
LIMCH1-207ENST00000508466 CKAP2LQ8IYA6 745 aa8.77□□□□□ -1
LIMCH1-207ENST00000508466 EPC1Q9H2F5 836 aa8.77□□□□□ -1
LIMCH1-207ENST00000508466 DIAPH3Q9NSV4 1193 aa8.77□□□□□ -1
LIMCH1-207ENST00000508466 ZNF215Q9UL58 517 aaPredicted RBP8.77□□□□□ -1
LIMCH1-207ENST00000508466 LUZP1Q86V48 1076 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 LRRN4CLQ8ND94 238 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 ZBTB40Q9NUA8 1239 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 DDX41Q9UJV9 622 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 HECW1Q76N89 1606 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 KIAA0586Q9BVV6 1533 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 CYP2E1P05181 493 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 FAM173BQ6P4H8 233 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 TMX3Q96JJ7 454 aa8.77□□□□□ -1.01
LIMCH1-207ENST00000508466 CCDC66A2RUB6 948 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 SOX12O15370 315 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 RAD51AP2Q09MP3 1159 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 E2F4Q16254 413 aa8.76□□□□□ -1.01
LIMCH1-207ENST00000508466 SIRT2Q8IXJ6 389 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms