RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 NFKBIBQ15653 356 aa6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 CC2D1BQ5T0F9 858 aaKnown RBP6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 POTEBQ6S5H4 581 aa6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 CDCA7LQ96GN5 454 aa6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 SALL2Q9Y467 1007 aaPredicted RBP6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 MAPK8IP3Q9UPT6 1336 aa6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 ZMYM3Q14202 1370 aa6.41□□□□□ -1.38
HMGB3P16-201ENST00000508037 DUOX2Q9NRD8 1548 aa6.4□□□□□ -1.38
HMGB3P16-201ENST00000508037 SYNMO15061 1565 aa6.4□□□□□ -1.38
HMGB3P16-201ENST00000508037 HNRNPMP52272 730 aaKnown RBP eCLIP6.4□□□□□ -1.38
HMGB3P16-201ENST00000508037 UPF1Q92900 1129 aaKnown RBP eCLIP6.4□□□□□ -1.38
HMGB3P16-201ENST00000508037 CGNL1Q0VF96 1302 aa6.4□□□□□ -1.39
HMGB3P16-201ENST00000508037 DISP3Q9P2K9 1392 aa6.4□□□□□ -1.39
HMGB3P16-201ENST00000508037 ABCC2Q92887 1545 aa6.4□□□□□ -1.39
HMGB3P16-201ENST00000508037 RNF17Q9BXT8 1623 aaKnown RBP6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 E9PSI1 815 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 PLIN1O60240 522 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 PPP2R1AP30153 589 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 PDE3AQ14432 1141 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 DUSP27Q5VZP5 1158 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 OXER1Q8TDS5 423 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 UPF2Q9HAU5 1272 aaKnown RBP6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 LHX6Q9UPM6 363 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 ZNF521Q96K83 1311 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 NKTRP30414 1462 aaKnown RBP6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 ERCC6Q03468 1493 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 MAGI2Q86UL8 1455 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 ASXL1Q8IXJ9 1541 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 SAMD9LQ8IVG5 1584 aa6.39□□□□□ -1.39
HMGB3P16-201ENST00000508037 PSDA5PKW4 1024 aaPredicted RBP6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 SLFN5Q08AF3 891 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 NBPF1Q3BBV0 1214 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 RGL3Q3MIN7 710 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 L1TD1Q5T7N2 865 aaKnown RBP6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 ZNF687Q8N1G0 1237 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 IL27Q8NEV9 243 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 ADAMTS8Q9UP79 889 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 PLA2R1Q13018 1463 aa6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 SCAF11Q99590 1463 aaKnown RBP6.38□□□□□ -1.39
HMGB3P16-201ENST00000508037 ARHGAP5Q13017 1502 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 WDR7Q9Y4E6 1490 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 MAP3K9P80192 1104 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 C8orf34Q49A92 452 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 TRMT2AQ8IZ69 625 aaKnown RBP6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 FAM43AQ8N2R8 423 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 RSPH6AQ9H0K4 717 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 WDR70Q9NW82 654 aa6.37□□□□□ -1.39
HMGB3P16-201ENST00000508037 MYO5CQ9NQX4 1742 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 SYCP2Q9BX26 1530 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 PLEKHH1Q9ULM0 1364 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 SENP3-EIF4A1A0A087X0R7 540 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 PMFBP1Q8TBY8 1022 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 FRAT1Q92837 279 aaPredicted RBP6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 CDC42BPBQ9Y5S2 1711 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 IQGAP1P46940 1657 aa6.36□□□□□ -1.39
HMGB3P16-201ENST00000508037 NEURL4Q96JN8 1562 aa6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 KDM4FA0A1W2PPD8 638 aa6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 PRKCSHP14314 528 aaPredicted RBP6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 CANXP27824 592 aaKnown RBP6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 C20orf194Q5TEA3 1177 aa6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 KIAA1210Q9ULL0 1709 aa6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 MADDQ8WXG6 1647 aa6.35□□□□□ -1.39
HMGB3P16-201ENST00000508037 KANK1Q14678 1352 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 CENPJQ9HC77 1338 aaPredicted RBP6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 EVI5O60447 810 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 RGS3P49796 1198 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 CLUAP1Q96AJ1 413 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 KRTAP3-3Q9BYR6 98 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 KRTAP3-2Q9BYR7 98 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 TTC37Q6PGP7 1564 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 TRPM2O94759 1503 aa6.34□□□□□ -1.39
HMGB3P16-201ENST00000508037 RTEL1-TNFRSF6BF6WH68 1400 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 KDM5AP29375 1690 aaKnown RBP6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 PBX2P40425 430 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 CAMK2BQ13554 666 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 PPP4R3BQ5MIZ7 849 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 EFCAB2Q5VUJ9 269 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 ANO8Q9HCE9 1232 aaPredicted RBP6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 EMILIN3Q9NT22 766 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 BRPF3Q9ULD4 1205 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 SPHKAPQ2M3C7 1700 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 PTPRTO14522 1441 aa6.33□□□□□ -1.4
HMGB3P16-201ENST00000508037 POLR3AO14802 1390 aaPredicted RBP6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 VIRMAQ69YN4 1812 aaKnown RBP6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 FRAT2O75474 233 aaPredicted RBP6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 CT47B1P0C2W7 299 aaPredicted RBP6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 WDR63Q8IWG1 891 aa6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 RWDD1Q9H446 243 aaPredicted RBP6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 ISY1Q9ULR0 285 aaKnown RBP6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 PLCH2O75038 1416 aa6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 SHROOM2Q13796 1616 aa6.32□□□□□ -1.4
HMGB3P16-201ENST00000508037 SBNO2Q9Y2G9 1366 aa6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 MYOM2P54296 1465 aa6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 APAF1O14727 1248 aa6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 EIF5BO60841 1220 aaKnown RBP6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 PTMSP20962 102 aa6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 SLC4A3P48751 1232 aa6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 SPNS2Q8IVW8 549 aa6.31□□□□□ -1.4
HMGB3P16-201ENST00000508037 CFAP53Q96M91 514 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms