RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 WDR43Q15061 677 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS50-210ENST00000471188 MPNDQ8N594 471 aa5.26□□□□□ -1.57
VPS50-210ENST00000471188 KHSRPQ92945 711 aaKnown RBP eCLIP5.26□□□□□ -1.571e-6■■■□□ 17.9
VPS50-210ENST00000471188 NOL7Q9UMY1 257 aaKnown RBP5.26□□□□□ -1.57
VPS50-210ENST00000471188 KDM2AQ9Y2K7 1162 aa5.26□□□□□ -1.57
VPS50-210ENST00000471188 ROCK2O75116 1388 aaKnown RBP5.26□□□□□ -1.57
VPS50-210ENST00000471188 KCNJ4P48050 445 aa5.26□□□□□ -1.57
VPS50-210ENST00000471188 MYOM3Q5VTT5 1437 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 SPATA31E1Q6ZUB1 1445 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 ZNF500O60304 480 aaPredicted RBP5.25□□□□□ -1.57
VPS50-210ENST00000471188 TAF3Q5VWG9 929 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 CERS3Q8IU89 383 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 ZKSCAN5Q9Y2L8 839 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 ST20-MTHFSA0A0A6YYL1 179 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 CAVIN1Q6NZI2 390 aaKnown RBP5.25□□□□□ -1.57
VPS50-210ENST00000471188 UHRF1BP1LA0JNW5 1464 aa5.25□□□□□ -1.57
VPS50-210ENST00000471188 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS50-210ENST00000471188 PTMSP20962 102 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 ATP2B3Q16720 1220 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 ARSIQ5FYB1 569 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 RSPH4AQ5TD94 716 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 PANK1Q8TE04 598 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 CLUAP1Q96AJ1 413 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 CFAP44Q96MT7 982 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 RIMBP2O15034 1052 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 DOK7Q18PE1 504 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 DUSP27Q5VZP5 1158 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 RNF214Q8ND24 703 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 UPF1Q92900 1129 aaKnown RBP eCLIP5.24□□□□□ -1.57
VPS50-210ENST00000471188 ADAMTS8Q9UP79 889 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 HOXB3P14651 431 aaPredicted RBP5.24□□□□□ -1.57
VPS50-210ENST00000471188 IRX3P78415 501 aaPredicted RBP5.24□□□□□ -1.57
VPS50-210ENST00000471188 PDCL2Q8N4E4 241 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 PDZRN3Q9UPQ7 1066 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 MIA2Q96PC5 1412 aa5.24□□□□□ -1.57
VPS50-210ENST00000471188 ERBB3P21860 1342 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 KIAA2012Q0VF49 1180 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 HS1BP3Q53T59 392 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 CCDC39Q9UFE4 941 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 CGNL1Q0VF96 1302 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 FHOD3Q2V2M9 1422 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 MCTP1Q6DN14 999 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 KIF3AQ9Y496 699 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 CTTNBP2Q8WZ74 1663 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 RAD54L2Q9Y4B4 1467 aa5.23□□□□□ -1.57
VPS50-210ENST00000471188 U2AF2P26368 475 aaKnown RBP eCLIP5.22□□□□□ -1.574e-6■■■□□ 18.1
VPS50-210ENST00000471188 CCDC146Q8IYE0 955 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 MYRIPQ8NFW9 859 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 PMFBP1Q8TBY8 1022 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 TRERF1Q96PN7 1200 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 NUDT7P0C024 238 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 SSFA2P28290 1259 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 RBSNQ9H1K0 784 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 PRIM1P49642 420 aaKnown RBP5.22□□□□□ -1.57
VPS50-210ENST00000471188 HMGN5P82970 282 aaKnown RBP5.22□□□□□ -1.57
VPS50-210ENST00000471188 VARS2Q5ST30 1063 aaKnown RBP5.22□□□□□ -1.57
VPS50-210ENST00000471188 HS3ST6Q96QI5 342 aa5.22□□□□□ -1.57
VPS50-210ENST00000471188 RAB3GAP1Q15042 981 aa5.21□□□□□ -1.57
VPS50-210ENST00000471188 KLHL40Q2TBA0 621 aa5.21□□□□□ -1.57
VPS50-210ENST00000471188 NBPF1Q3BBV0 1214 aa5.21□□□□□ -1.57
VPS50-210ENST00000471188 DHX37Q8IY37 1157 aaKnown RBP5.21□□□□□ -1.57
VPS50-210ENST00000471188 EIF3AQ14152 1382 aaKnown RBP5.21□□□□□ -1.57
VPS50-210ENST00000471188 NLRP1Q9C000 1473 aa5.21□□□□□ -1.57
VPS50-210ENST00000471188 PCF11O94913 1555 aaKnown RBP5.21□□□□□ -1.57
VPS50-210ENST00000471188 ERICH4A6NGS2 130 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 GTPBP6O43824 516 aaPredicted RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 MCM5P33992 734 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 ZSCAN23Q3MJ62 389 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 SECISBP2LQ93073 1101 aaKnown RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 ZBTB9Q96C00 473 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 CFAP43Q8NDM7 1665 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 RPRD2Q5VT52 1461 aaKnown RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 CCDC66A2RUB6 948 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 PTGER2P43116 358 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 TNNT3P45378 269 aaPredicted RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 PLCB2Q00722 1185 aa5.21□□□□□ -1.58
VPS50-210ENST00000471188 CHAF1AQ13111 956 aaPredicted RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 DNAJC2Q99543 621 aaKnown RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 RWDD1Q9H446 243 aaPredicted RBP5.21□□□□□ -1.58
VPS50-210ENST00000471188 GAPVD1Q14C86 1478 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 BCORL1Q5H9F3 1711 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 ANKRD30BQ9BXX2 1392 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 PLEKHH1Q9ULM0 1364 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 ARID3CA6NKF2 412 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 TRIM6-TRIM34B2RNG4 842 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 BCL2L13Q9BXK5 485 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 TRIM34Q9BYJ4 488 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 BCL2L12Q9HB09 334 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 RBM27Q9P2N5 1060 aaKnown RBP5.2□□□□□ -1.58
VPS50-210ENST00000471188 ABCC10Q5T3U5 1492 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 BAG4O95429 457 aaKnown RBP5.2□□□□□ -1.58
VPS50-210ENST00000471188 DSG2Q14126 1118 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 PLPP6Q8IY26 295 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 C17orf53Q8N3J3 647 aaPredicted RBP5.2□□□□□ -1.58
VPS50-210ENST00000471188 PRIMPOLQ96LW4 560 aa5.2□□□□□ -1.58
VPS50-210ENST00000471188 POLR1AO95602 1720 aaPredicted RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 SYCE3A1L190 88 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 APAF1O14727 1248 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 SLFN5Q08AF3 891 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 NEUROD2Q15784 382 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms