RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 PDE3BQ13370 1112 aa10.68□□□□□ -0.7
SMC4-212ENST00000470240 VARS2Q5ST30 1063 aaKnown RBP10.68□□□□□ -0.7
SMC4-212ENST00000470240 PTCD2Q8WV60 388 aaKnown RBP10.68□□□□□ -0.7
SMC4-212ENST00000470240 SCAF11Q99590 1463 aaKnown RBP10.68□□□□□ -0.7
SMC4-212ENST00000470240 LRPPRCP42704 1394 aaKnown RBP10.67□□□□□ -0.7
SMC4-212ENST00000470240 MFSD10Q14728 455 aa10.67□□□□□ -0.7
SMC4-212ENST00000470240 NBPF1Q3BBV0 1214 aa10.67□□□□□ -0.7
SMC4-212ENST00000470240 AFAP1Q8N556 730 aa10.67□□□□□ -0.7
SMC4-212ENST00000470240 SYNMO15061 1565 aa10.66□□□□□ -0.7
SMC4-212ENST00000470240 KIF3BO15066 747 aa10.66□□□□□ -0.7
SMC4-212ENST00000470240 IRX6P78412 446 aaPredicted RBP10.66□□□□□ -0.7
SMC4-212ENST00000470240 MYOM2P54296 1465 aa10.66□□□□□ -0.7
SMC4-212ENST00000470240 EFCAB6Q5THR3 1501 aa10.65□□□□□ -0.7
SMC4-212ENST00000470240 DISP3Q9P2K9 1392 aa10.65□□□□□ -0.71
SMC4-212ENST00000470240 KDM5AP29375 1690 aaKnown RBP10.64□□□□□ -0.71
SMC4-212ENST00000470240 TESK2Q96S53 571 aa10.64□□□□□ -0.71
SMC4-212ENST00000470240 KNSTRNQ9Y448 316 aa10.64□□□□□ -0.71
SMC4-212ENST00000470240 HECW2Q9P2P5 1572 aa10.64□□□□□ -0.71
SMC4-212ENST00000470240 LMTK2Q8IWU2 1503 aa10.63□□□□□ -0.71
SMC4-212ENST00000470240 POTEB3A0JP26 581 aa10.63□□□□□ -0.71
SMC4-212ENST00000470240 POTEBQ6S5H4 581 aa10.63□□□□□ -0.71
SMC4-212ENST00000470240 KIDINS220Q9ULH0 1771 aa10.62□□□□□ -0.71
SMC4-212ENST00000470240 MAP3K4Q9Y6R4 1608 aa10.62□□□□□ -0.71
SMC4-212ENST00000470240 OXER1Q8TDS5 423 aa10.62□□□□□ -0.71
SMC4-212ENST00000470240 PANK3Q9H999 370 aa10.62□□□□□ -0.71
SMC4-212ENST00000470240 RBM19Q9Y4C8 960 aaKnown RBP10.62□□□□□ -0.71
SMC4-212ENST00000470240 CD109Q6YHK3 1445 aa10.61□□□□□ -0.71
SMC4-212ENST00000470240 POGZQ7Z3K3 1410 aa10.61□□□□□ -0.71
SMC4-212ENST00000470240 WDR70Q9NW82 654 aa10.61□□□□□ -0.71
SMC4-212ENST00000470240 LHX6Q9UPM6 363 aa10.61□□□□□ -0.71
SMC4-212ENST00000470240 MROH1Q8NDA8 1641 aa10.61□□□□□ -0.71
SMC4-212ENST00000470240 PPRC1Q5VV67 1664 aaKnown RBP10.6□□□□□ -0.71
SMC4-212ENST00000470240 PER1O15534 1290 aaPredicted RBP10.6□□□□□ -0.71
SMC4-212ENST00000470240 MAP3K9P80192 1104 aa10.6□□□□□ -0.71
SMC4-212ENST00000470240 WDR43Q15061 677 aaKnown RBP eCLIP10.6□□□□□ -0.715e-20■■■■■ 85.2
SMC4-212ENST00000470240 CC2D1BQ5T0F9 858 aaKnown RBP10.6□□□□□ -0.71
SMC4-212ENST00000470240 CCDC136Q96JN2 1154 aa10.6□□□□□ -0.71
SMC4-212ENST00000470240 NEO1Q92859 1461 aa10.6□□□□□ -0.71
SMC4-212ENST00000470240 MLH3Q9UHC1 1453 aa10.6□□□□□ -0.71
SMC4-212ENST00000470240 RNF123Q5XPI4 1314 aa10.59□□□□□ -0.71
SMC4-212ENST00000470240 BLMP54132 1417 aaPredicted RBP10.59□□□□□ -0.71
SMC4-212ENST00000470240 ASXL1Q8IXJ9 1541 aa10.59□□□□□ -0.71
SMC4-212ENST00000470240 IFT172Q9UG01 1749 aa10.59□□□□□ -0.71
SMC4-212ENST00000470240 ERICH6Q7L0X2 663 aa10.59□□□□□ -0.71
SMC4-212ENST00000470240 ABCA6Q8N139 1617 aa10.58□□□□□ -0.72
SMC4-212ENST00000470240 SETBP1Q9Y6X0 1596 aa10.58□□□□□ -0.72
SMC4-212ENST00000470240 NPC1L1Q9UHC9 1359 aa10.58□□□□□ -0.72
SMC4-212ENST00000470240 PLSCR2Q9NRY7 297 aa10.58□□□□□ -0.72
SMC4-212ENST00000470240 FANCIQ9NVI1 1328 aa10.58□□□□□ -0.72
SMC4-212ENST00000470240 PSDA5PKW4 1024 aaPredicted RBP10.57□□□□□ -0.72
SMC4-212ENST00000470240 B4GALNT3Q6L9W6 998 aa10.57□□□□□ -0.72
SMC4-212ENST00000470240 ZNF687Q8N1G0 1237 aa10.57□□□□□ -0.72
SMC4-212ENST00000470240 RCAN3Q9UKA8 241 aa10.57□□□□□ -0.72
SMC4-212ENST00000470240 MYO3AQ8NEV4 1616 aa10.57□□□□□ -0.72
SMC4-212ENST00000470240 ADGRB3O60242 1522 aa10.57□□□□□ -0.72
SMC4-212ENST00000470240 RPGRIP1LQ68CZ1 1315 aa10.57□□□□□ -0.72
SMC4-212ENST00000470240 ZC3H13Q5T200 1668 aaKnown RBP10.57□□□□□ -0.72
SMC4-212ENST00000470240 PLCB2Q00722 1185 aa10.56□□□□□ -0.72
SMC4-212ENST00000470240 EMILIN3Q9NT22 766 aa10.56□□□□□ -0.72
SMC4-212ENST00000470240 PIK3C2GO75747 1445 aa10.56□□□□□ -0.72
SMC4-212ENST00000470240 SBNO2Q9Y2G9 1366 aa10.55□□□□□ -0.72
SMC4-212ENST00000470240 MROH2AA6NES4 1674 aa10.55□□□□□ -0.72
SMC4-212ENST00000470240 RRP1P56182 461 aaKnown RBP10.55□□□□□ -0.72
SMC4-212ENST00000470240 ANP32EQ9BTT0 268 aa10.55□□□□□ -0.72
SMC4-212ENST00000470240 NRXN1Q9ULB1 1477 aa10.55□□□□□ -0.72
SMC4-212ENST00000470240 MYOM1P52179 1685 aa10.54□□□□□ -0.72
SMC4-212ENST00000470240 EVI5O60447 810 aa10.54□□□□□ -0.72
SMC4-212ENST00000470240 PPLO60437 1756 aa10.54□□□□□ -0.72
SMC4-212ENST00000470240 CAMSAP1Q5T5Y3 1602 aa10.54□□□□□ -0.72
SMC4-212ENST00000470240 KDM4FA0A1W2PPD8 638 aa10.53□□□□□ -0.72
SMC4-212ENST00000470240 CAMK2BQ13554 666 aa10.53□□□□□ -0.72
SMC4-212ENST00000470240 NGEFQ8N5V2 710 aa10.53□□□□□ -0.72
SMC4-212ENST00000470240 ABCC3O15438 1527 aa10.53□□□□□ -0.72
SMC4-212ENST00000470240 UGGT1Q9NYU2 1555 aa10.52□□□□□ -0.72
SMC4-212ENST00000470240 PPP2R1AP30153 589 aa10.52□□□□□ -0.73
SMC4-212ENST00000470240 PPP4R3BQ5MIZ7 849 aa10.52□□□□□ -0.73
SMC4-212ENST00000470240 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.73
SMC4-212ENST00000470240 KRTAP3-2Q9BYR7 98 aa10.52□□□□□ -0.73
SMC4-212ENST00000470240 CENPJQ9HC77 1338 aaPredicted RBP10.52□□□□□ -0.73
SMC4-212ENST00000470240 NOS1P29475 1434 aa10.51□□□□□ -0.73
SMC4-212ENST00000470240 E2F4Q16254 413 aa10.51□□□□□ -0.73
SMC4-212ENST00000470240 GGT6Q6P531 493 aa10.51□□□□□ -0.73
SMC4-212ENST00000470240 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.51□□□□□ -0.73
SMC4-212ENST00000470240 FRMPD1Q5SYB0 1578 aa10.51□□□□□ -0.73
SMC4-212ENST00000470240 QRICH2Q9H0J4 1663 aa10.5□□□□□ -0.73
SMC4-212ENST00000470240 NPATQ14207 1427 aa10.5□□□□□ -0.73
SMC4-212ENST00000470240 ERVK-7P63135 1459 aa10.5□□□□□ -0.73
SMC4-212ENST00000470240 CFAP70Q5T0N1 1121 aa10.5□□□□□ -0.73
SMC4-212ENST00000470240 DIP2CQ9Y2E4 1556 aa10.49□□□□□ -0.73
SMC4-212ENST00000470240 DPYSL4O14531 572 aa10.49□□□□□ -0.73
SMC4-212ENST00000470240 HAP1P54257 671 aaPredicted RBP10.49□□□□□ -0.73
SMC4-212ENST00000470240 ZNF454Q8N9F8 522 aa10.49□□□□□ -0.73
SMC4-212ENST00000470240 SALL2Q9Y467 1007 aaPredicted RBP10.49□□□□□ -0.73
SMC4-212ENST00000470240 ADGRF5Q8IZF2 1346 aa10.49□□□□□ -0.73
SMC4-212ENST00000470240 ARHGAP31Q2M1Z3 1444 aa10.48□□□□□ -0.73
SMC4-212ENST00000470240 RICTORQ6R327 1708 aa10.47□□□□□ -0.73
SMC4-212ENST00000470240 ANP32AP39687 249 aaKnown RBP10.47□□□□□ -0.73
SMC4-212ENST00000470240 PBX2P40425 430 aa10.47□□□□□ -0.73
SMC4-212ENST00000470240 PUS7Q96PZ0 661 aaKnown RBP10.47□□□□□ -0.73
SMC4-212ENST00000470240 GLI2P10070 1586 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms