RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TMEM132EQ6IEE7 984 aa12.78□□□□□ -0.36
HDAC3-205ENST00000469550 ABCA3Q99758 1704 aa12.77□□□□□ -0.37
HDAC3-205ENST00000469550 SPATA31A3Q5VYP0 1347 aa12.77□□□□□ -0.37
HDAC3-205ENST00000469550 SLIT2O94813 1529 aa12.76□□□□□ -0.37
HDAC3-205ENST00000469550 FOXO3O43524 673 aa12.76□□□□□ -0.37
HDAC3-205ENST00000469550 NBR1Q14596 966 aa12.76□□□□□ -0.37
HDAC3-205ENST00000469550 RTL5Q5HYW3 569 aaPredicted RBP12.76□□□□□ -0.37
HDAC3-205ENST00000469550 ADGRB1O14514 1584 aa12.76□□□□□ -0.37
HDAC3-205ENST00000469550 ROCK2O75116 1388 aaKnown RBP12.76□□□□□ -0.37
HDAC3-205ENST00000469550 ANKARQ7Z5J8 1434 aa12.75□□□□□ -0.37
HDAC3-205ENST00000469550 NWD2Q9ULI1 1742 aa12.75□□□□□ -0.37
HDAC3-205ENST00000469550 TNS3Q68CZ2 1445 aa12.75□□□□□ -0.37
HDAC3-205ENST00000469550 SBNO1A3KN83 1393 aa12.74□□□□□ -0.37
HDAC3-205ENST00000469550 PNISRQ8TF01 805 aaKnown RBP12.74□□□□□ -0.37
HDAC3-205ENST00000469550 GLI3P10071 1580 aa12.74□□□□□ -0.37
HDAC3-205ENST00000469550 KTN1Q86UP2 1357 aaKnown RBP12.73□□□□□ -0.37
HDAC3-205ENST00000469550 XPCQ01831 940 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-205ENST00000469550 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
HDAC3-205ENST00000469550 PLCH1Q4KWH8 1693 aa12.73□□□□□ -0.37
HDAC3-205ENST00000469550 TRPM3Q9HCF6 1732 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-205ENST00000469550 CFAP70Q5T0N1 1121 aa12.72□□□□□ -0.37
HDAC3-205ENST00000469550 TCERG1O14776 1098 aaKnown RBP12.72□□□□□ -0.37
HDAC3-205ENST00000469550 PHF8Q9UPP1 1060 aa12.72□□□□□ -0.37
HDAC3-205ENST00000469550 RALGAPBQ86X10 1494 aa12.71□□□□□ -0.37
HDAC3-205ENST00000469550 NUTM2FA1L443 756 aa12.71□□□□□ -0.37
HDAC3-205ENST00000469550 KRT28Q7Z3Y7 464 aa12.71□□□□□ -0.37
HDAC3-205ENST00000469550 GJD4Q96KN9 370 aaPredicted RBP12.71□□□□□ -0.37
HDAC3-205ENST00000469550 USP47Q96K76 1375 aa12.71□□□□□ -0.37
HDAC3-205ENST00000469550 ALS2Q96Q42 1657 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 ARHGEF10O15013 1369 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 MS4A1P11836 297 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 PSME1Q06323 249 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 CCDC125Q86Z20 511 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 UNC5CLQ8IV45 518 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 STAC3Q96MF2 364 aa12.7□□□□□ -0.38
HDAC3-205ENST00000469550 EIF3AQ14152 1382 aaKnown RBP12.7□□□□□ -0.38
HDAC3-205ENST00000469550 TULP4Q9NRJ4 1543 aa12.69□□□□□ -0.38
HDAC3-205ENST00000469550 PRAM1Q96QH2 718 aa12.69□□□□□ -0.38
HDAC3-205ENST00000469550 NRAPQ86VF7 1730 aa12.69□□□□□ -0.38
HDAC3-205ENST00000469550 BRWD3Q6RI45 1802 aa12.69□□□□□ -0.38
HDAC3-205ENST00000469550 BRD4O60885 1362 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-205ENST00000469550 CRYBG1Q9Y4K1 1723 aa12.68□□□□□ -0.38
HDAC3-205ENST00000469550 ARHGEF28Q8N1W1 1705 aaKnown RBP12.68□□□□□ -0.38
HDAC3-205ENST00000469550 ITSN1Q15811 1721 aa12.67□□□□□ -0.38
HDAC3-205ENST00000469550 TMC1Q8TDI8 760 aa12.67□□□□□ -0.38
HDAC3-205ENST00000469550 RRP1P56182 461 aaKnown RBP12.66□□□□□ -0.38
HDAC3-205ENST00000469550 PDE3BQ13370 1112 aa12.66□□□□□ -0.38
HDAC3-205ENST00000469550 RALBP1Q15311 655 aa12.66□□□□□ -0.38
HDAC3-205ENST00000469550 KIAA1210Q9ULL0 1709 aa12.66□□□□□ -0.38
HDAC3-205ENST00000469550 COL14A1Q05707 1796 aaKnown RBP12.65□□□□□ -0.38
HDAC3-205ENST00000469550 VPS72Q15906 364 aa12.65□□□□□ -0.38
HDAC3-205ENST00000469550 POGKQ9P215 609 aa12.65□□□□□ -0.38
HDAC3-205ENST00000469550 BLMP54132 1417 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-205ENST00000469550 PPM1GO15355 546 aaPredicted RBP12.64□□□□□ -0.39
HDAC3-205ENST00000469550 ONECUT3O60422 494 aaPredicted RBP12.64□□□□□ -0.39
HDAC3-205ENST00000469550 MYBBP1AQ9BQG0 1328 aaKnown RBP12.64□□□□□ -0.39
HDAC3-205ENST00000469550 PRR36Q9H6K5 1346 aa12.64□□□□□ -0.39
HDAC3-205ENST00000469550 PDE4AP27815 886 aa12.63□□□□□ -0.39
HDAC3-205ENST00000469550 SAFB2Q14151 953 aaKnown RBP eCLIP12.63□□□□□ -0.39
HDAC3-205ENST00000469550 BACH2Q9BYV9 841 aa12.63□□□□□ -0.39
HDAC3-205ENST00000469550 INSRP06213 1382 aa12.63□□□□□ -0.39
HDAC3-205ENST00000469550 TOPAZ1Q8N9V7 1692 aa12.63□□□□□ -0.39
HDAC3-205ENST00000469550 GPRASP1Q5JY77 1395 aa12.62□□□□□ -0.39
HDAC3-205ENST00000469550 CABLES1Q8TDN4 633 aa12.62□□□□□ -0.39
HDAC3-205ENST00000469550 TRAK1Q9UPV9 953 aa12.62□□□□□ -0.39
HDAC3-205ENST00000469550 ATP7BP35670 1465 aa12.62□□□□□ -0.39
HDAC3-205ENST00000469550 WASLO00401 505 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-205ENST00000469550 PRKCSHP14314 528 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-205ENST00000469550 HAP1P54257 671 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-205ENST00000469550 RCAN3Q9UKA8 241 aa12.61□□□□□ -0.39
HDAC3-205ENST00000469550 DCAF11Q8TEB1 546 aa12.61□□□□□ -0.39
HDAC3-205ENST00000469550 ZRANB1Q9UGI0 708 aa12.61□□□□□ -0.39
HDAC3-205ENST00000469550 EXOC6Q8TAG9 804 aa12.6□□□□□ -0.39
HDAC3-205ENST00000469550 PMFBP1Q8TBY8 1022 aa12.6□□□□□ -0.39
HDAC3-205ENST00000469550 MINK1Q8N4C8 1332 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-205ENST00000469550 PHRF1Q9P1Y6 1649 aaKnown RBP12.6□□□□□ -0.39
HDAC3-205ENST00000469550 FAM83GA6ND36 823 aa12.6□□□□□ -0.39
HDAC3-205ENST00000469550 SEPT12Q8IYM1 358 aa12.6□□□□□ -0.39
HDAC3-205ENST00000469550 THSD7AQ9UPZ6 1657 aa12.59□□□□□ -0.39
HDAC3-205ENST00000469550 NEFMP07197 916 aa12.58□□□□□ -0.4
HDAC3-205ENST00000469550 DDRGK1Q96HY6 314 aa12.58□□□□□ -0.4
HDAC3-205ENST00000469550 EP400Q96L91 3159 aa12.58□□□□□ -0.4
HDAC3-205ENST00000469550 LMOD2Q6P5Q4 547 aa12.58□□□□□ -0.4
HDAC3-205ENST00000469550 KDM2AQ9Y2K7 1162 aa12.58□□□□□ -0.4
HDAC3-205ENST00000469550 RGPD1P0DJD0 1748 aa12.57□□□□□ -0.4
HDAC3-205ENST00000469550 POLR3AO14802 1390 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-205ENST00000469550 KRT27Q7Z3Y8 459 aa12.56□□□□□ -0.4
HDAC3-205ENST00000469550 NLRP13Q86W25 1043 aa12.56□□□□□ -0.4
HDAC3-205ENST00000469550 POLR3GLQ9BT43 218 aa12.56□□□□□ -0.4
HDAC3-205ENST00000469550 PARD3Q8TEW0 1356 aa12.56□□□□□ -0.4
HDAC3-205ENST00000469550 LRP5O75197 1615 aa12.56□□□□□ -0.4
HDAC3-205ENST00000469550 CARD11Q9BXL7 1154 aa12.56□□□□□ -0.4
HDAC3-205ENST00000469550 NGDNQ8NEJ9 315 aaKnown RBP12.55□□□□□ -0.4
HDAC3-205ENST00000469550 NPM2Q86SE8 214 aaKnown RBP12.54□□□□□ -0.4
HDAC3-205ENST00000469550 ANO8Q9HCE9 1232 aaPredicted RBP12.54□□□□□ -0.4
HDAC3-205ENST00000469550 BTG4Q9NY30 223 aa12.54□□□□□ -0.4
HDAC3-205ENST00000469550 CCDC9Q9Y3X0 531 aaKnown RBP12.54□□□□□ -0.4
HDAC3-205ENST00000469550 SPATA31A5Q5VU36 1347 aa12.54□□□□□ -0.4
HDAC3-205ENST00000469550 SPATA31A7Q8IWB4 1347 aa12.54□□□□□ -0.4
HDAC3-205ENST00000469550 NRKQ7Z2Y5 1582 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms