RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ATMINO43313 823 aaPredicted RBP8.21□□□□□ -1.1
USP39-213ENST00000467885 ATF3P18847 181 aa8.21□□□□□ -1.1
USP39-213ENST00000467885 C14orf37Q86TY3 774 aa8.21□□□□□ -1.1
USP39-213ENST00000467885 PROM2Q8N271 834 aa8.21□□□□□ -1.1
USP39-213ENST00000467885 SLAIN2Q9P270 581 aa8.21□□□□□ -1.1
USP39-213ENST00000467885 CHD2O14647 1828 aaKnown RBP8.21□□□□□ -1.1
USP39-213ENST00000467885 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.2□□□□□ -1.1
USP39-213ENST00000467885 LRRC7Q96NW7 1537 aa8.2□□□□□ -1.1
USP39-213ENST00000467885 ESCO1Q5FWF5 840 aa8.2□□□□□ -1.1
USP39-213ENST00000467885 CADPS2Q86UW7 1296 aa8.2□□□□□ -1.1
USP39-213ENST00000467885 PMFBP1Q8TBY8 1022 aa8.2□□□□□ -1.1
USP39-213ENST00000467885 METRNQ9UJH8 293 aa8.2□□□□□ -1.1
USP39-213ENST00000467885 CPS1P31327 1500 aa8.19□□□□□ -1.1
USP39-213ENST00000467885 TULP4Q9NRJ4 1543 aa8.19□□□□□ -1.1
USP39-213ENST00000467885 AMER1Q5JTC6 1135 aaPredicted RBP8.19□□□□□ -1.1
USP39-213ENST00000467885 TERF2IPQ9NYB0 399 aa8.19□□□□□ -1.1
USP39-213ENST00000467885 PHF8Q9UPP1 1060 aa8.19□□□□□ -1.1
USP39-213ENST00000467885 XRN1Q8IZH2 1706 aaKnown RBP8.19□□□□□ -1.1
USP39-213ENST00000467885 ACEP12821 1306 aa8.19□□□□□ -1.1
USP39-213ENST00000467885 ATAD2Q6PL18 1390 aa8.19□□□□□ -1.1
USP39-213ENST00000467885 FYB1O15117 783 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 FOXO3O43524 673 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 POTEJP0CG39 1038 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 C7P10643 843 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 MIER1Q8N108 512 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 SLC39A7Q92504 469 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 TSPYL2Q9H2G4 693 aaPredicted RBP8.18□□□□□ -1.1
USP39-213ENST00000467885 ADGRL3Q9HAR2 1447 aa8.18□□□□□ -1.1
USP39-213ENST00000467885 POLR1AO95602 1720 aaPredicted RBP8.17□□□□□ -1.1
USP39-213ENST00000467885 POTEMA6NI47 508 aa8.17□□□□□ -1.1
USP39-213ENST00000467885 HDGFL2Q7Z4V5 671 aaPredicted RBP8.17□□□□□ -1.1
USP39-213ENST00000467885 CERKQ8TCT0 537 aa8.17□□□□□ -1.1
USP39-213ENST00000467885 KNSTRNQ9Y448 316 aa8.17□□□□□ -1.1
USP39-213ENST00000467885 CPSF1Q10570 1443 aaKnown RBP8.17□□□□□ -1.1
USP39-213ENST00000467885 NKTRP30414 1462 aaKnown RBP8.17□□□□□ -1.1
USP39-213ENST00000467885 NWD1Q149M9 1564 aa8.17□□□□□ -1.1
USP39-213ENST00000467885 LTBP4Q8N2S1 1624 aa8.17□□□□□ -1.1
USP39-213ENST00000467885 ARHGEF28Q8N1W1 1705 aaKnown RBP8.17□□□□□ -1.1
USP39-213ENST00000467885 STRCP1A6NGW2 1772 aa8.17□□□□□ -1.1
USP39-213ENST00000467885 MSH6P52701 1360 aa8.16□□□□□ -1.1
USP39-213ENST00000467885 NGDNQ8NEJ9 315 aaKnown RBP8.16□□□□□ -1.1
USP39-213ENST00000467885 KNDC1Q76NI1 1749 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 CD163L1Q9NR16 1453 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 PPIP5K1Q6PFW1 1433 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 ANKARQ7Z5J8 1434 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 POLR3AO14802 1390 aaPredicted RBP8.15□□□□□ -1.1
USP39-213ENST00000467885 ANKRD36BQ8N2N9 1353 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 NINLQ9Y2I6 1382 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 PSME1Q06323 249 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 POTEGQ6S5H5 508 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 BRINP3Q76B58 766 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 KRT28Q7Z3Y7 464 aa8.15□□□□□ -1.1
USP39-213ENST00000467885 DDX17Q92841 729 aaKnown RBP8.15□□□□□ -1.1
USP39-213ENST00000467885 PRKRIP1Q9H875 184 aaPredicted RBP8.15□□□□□ -1.1
USP39-213ENST00000467885 C1orf167Q5SNV9 1468 aa8.14□□□□□ -1.11
USP39-213ENST00000467885 SSH2Q76I76 1423 aa8.14□□□□□ -1.11
USP39-213ENST00000467885 TTC21BQ7Z4L5 1316 aa8.14□□□□□ -1.11
USP39-213ENST00000467885 CC2D1BQ5T0F9 858 aaKnown RBP8.14□□□□□ -1.11
USP39-213ENST00000467885 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP39-213ENST00000467885 ATP7BP35670 1465 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 DCCP43146 1447 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 MST1RQ04912 1400 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 A0A1W2PP64 1363 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 KTN1Q86UP2 1357 aaKnown RBP8.13□□□□□ -1.11
USP39-213ENST00000467885 TOM1O60784 492 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 ATN1P54259 1190 aaPredicted RBP8.13□□□□□ -1.11
USP39-213ENST00000467885 KIF12Q96FN5 646 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 GGNBP2Q9H3C7 697 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 QRICH2Q9H0J4 1663 aa8.13□□□□□ -1.11
USP39-213ENST00000467885 NPC1L1Q9UHC9 1359 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 ANP32CO43423 234 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 FBLN1P23142 703 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 XPCQ01831 940 aaPredicted RBP8.12□□□□□ -1.11
USP39-213ENST00000467885 CNGB1Q14028 1251 aaPredicted RBP8.12□□□□□ -1.11
USP39-213ENST00000467885 RALBP1Q15311 655 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 CCDC184Q52MB2 194 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 NME9Q86XW9 330 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 ADGRB2O60241 1585 aa8.12□□□□□ -1.11
USP39-213ENST00000467885 SOS2Q07890 1332 aaPredicted RBP8.11□□□□□ -1.11
USP39-213ENST00000467885 CGNL1Q0VF96 1302 aa8.11□□□□□ -1.11
USP39-213ENST00000467885 MAMSTRQ6ZN01 415 aa8.11□□□□□ -1.11
USP39-213ENST00000467885 MORC1Q86VD1 984 aa8.11□□□□□ -1.11
USP39-213ENST00000467885 UBAP1LF5GYI3 381 aa8.1□□□□□ -1.11
USP39-213ENST00000467885 PPP2R1AP30153 589 aa8.1□□□□□ -1.11
USP39-213ENST00000467885 ABTB2Q8N961 1025 aa8.1□□□□□ -1.11
USP39-213ENST00000467885 USP6P35125 1406 aa8.1□□□□□ -1.11
USP39-213ENST00000467885 BRD4O60885 1362 aaPredicted RBP8.1□□□□□ -1.11
USP39-213ENST00000467885 TTC21AQ8NDW8 1320 aa8.09□□□□□ -1.11
USP39-213ENST00000467885 NLRP6P59044 892 aa8.09□□□□□ -1.11
USP39-213ENST00000467885 BMP2KQ9NSY1 1161 aaPredicted RBP8.09□□□□□ -1.11
USP39-213ENST00000467885 TRPC6Q9Y210 931 aa8.09□□□□□ -1.11
USP39-213ENST00000467885 USP32Q8NFA0 1604 aa8.09□□□□□ -1.11
USP39-213ENST00000467885 EDC4Q6P2E9 1401 aaKnown RBP8.09□□□□□ -1.11
USP39-213ENST00000467885 NSD3Q9BZ95 1437 aa8.09□□□□□ -1.11
USP39-213ENST00000467885 CDC42BPGQ6DT37 1551 aa8.09□□□□□ -1.11
USP39-213ENST00000467885 USP31Q70CQ4 1352 aa8.09□□□□□ -1.12
USP39-213ENST00000467885 SPATA31A3Q5VYP0 1347 aa8.08□□□□□ -1.12
USP39-213ENST00000467885 NPHP3Q7Z494 1330 aa8.08□□□□□ -1.12
USP39-213ENST00000467885 CCER2I3L3R5 266 aa8.08□□□□□ -1.12
USP39-213ENST00000467885 MTHFSP49914 203 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms