RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 TTC21BQ7Z4L5 1316 aa26.21■■□□□ 1.79
RPS28-202ENST00000449223 MYBBP1AQ9BQG0 1328 aaKnown RBP26.21■■□□□ 1.79
RPS28-202ENST00000449223 IQSEC2Q5JU85 1478 aa26.21■■□□□ 1.79
RPS28-202ENST00000449223 SLAIN2Q9P270 581 aa26.19■■□□□ 1.78
RPS28-202ENST00000449223 TRPM3Q9HCF6 1732 aaPredicted RBP26.18■■□□□ 1.78
RPS28-202ENST00000449223 PIK3C2AO00443 1686 aa26.18■■□□□ 1.78
RPS28-202ENST00000449223 OVOS2A0A0J9YW53 1432 aa26.15■■□□□ 1.78
RPS28-202ENST00000449223 OVOS2Q6IE36 1432 aa26.15■■□□□ 1.78
RPS28-202ENST00000449223 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.15■■□□□ 1.78
RPS28-202ENST00000449223 USP31Q70CQ4 1352 aa26.15■■□□□ 1.78
RPS28-202ENST00000449223 BRINP3Q76B58 766 aa26.14■■□□□ 1.78
RPS28-202ENST00000449223 SCAF1Q9H7N4 1312 aaKnown RBP26.14■■□□□ 1.77
RPS28-202ENST00000449223 NLRP13Q86W25 1043 aa26.14■■□□□ 1.77
RPS28-202ENST00000449223 GGNBP2Q9H3C7 697 aa26.14■■□□□ 1.77
RPS28-202ENST00000449223 MORC1Q86VD1 984 aa26.13■■□□□ 1.77
RPS28-202ENST00000449223 NPHP3Q7Z494 1330 aa26.12■■□□□ 1.77
RPS28-202ENST00000449223 NHSL1Q5SYE7 1610 aa26.12■■□□□ 1.77
RPS28-202ENST00000449223 MARF1Q9Y4F3 1742 aaKnown RBP26.12■■□□□ 1.77
RPS28-202ENST00000449223 FOXO3O43524 673 aa26.12■■□□□ 1.77
RPS28-202ENST00000449223 CNGB1Q14028 1251 aaPredicted RBP26.12■■□□□ 1.77
RPS28-202ENST00000449223 NME9Q86XW9 330 aa26.12■■□□□ 1.77
RPS28-202ENST00000449223 PXDNQ92626 1479 aa26.11■■□□□ 1.77
RPS28-202ENST00000449223 PSME1Q06323 249 aa26.11■■□□□ 1.77
RPS28-202ENST00000449223 ALS2Q96Q42 1657 aa26.11■■□□□ 1.77
RPS28-202ENST00000449223 PPP2R1AP30153 589 aa26.1■■□□□ 1.77
RPS28-202ENST00000449223 SBNO1A3KN83 1393 aa26.08■■□□□ 1.77
RPS28-202ENST00000449223 AATKQ6ZMQ8 1374 aa26.07■■□□□ 1.76
RPS28-202ENST00000449223 COG3Q96JB2 828 aa26.07■■□□□ 1.76
RPS28-202ENST00000449223 ROBO1Q9Y6N7 1651 aa26.06■■□□□ 1.76
RPS28-202ENST00000449223 KRT28Q7Z3Y7 464 aa26.05■■□□□ 1.76
RPS28-202ENST00000449223 CCDC184Q52MB2 194 aa26.04■■□□□ 1.76
RPS28-202ENST00000449223 SMG6Q86US8 1419 aaKnown RBP26.03■■□□□ 1.76
RPS28-202ENST00000449223 AHDC1Q5TGY3 1603 aaPredicted RBP26.03■■□□□ 1.76
RPS28-202ENST00000449223 MRS2Q9HD23 443 aa26.03■■□□□ 1.76
RPS28-202ENST00000449223 ZRANB1Q9UGI0 708 aa26.03■■□□□ 1.76
RPS28-202ENST00000449223 SOS2Q07890 1332 aaPredicted RBP26.03■■□□□ 1.76
RPS28-202ENST00000449223 MAP2P11137 1827 aaKnown RBP26.02■■□□□ 1.76
RPS28-202ENST00000449223 TNS3Q68CZ2 1445 aa26.01■■□□□ 1.75
RPS28-202ENST00000449223 ABTB2Q8N961 1025 aa26.01■■□□□ 1.75
RPS28-202ENST00000449223 PAK3O75914 559 aaPredicted RBP25.99■■□□□ 1.75
RPS28-202ENST00000449223 SLIT3O75094 1523 aa25.99■■□□□ 1.75
RPS28-202ENST00000449223 TOM1O60784 492 aa25.98■■□□□ 1.75
RPS28-202ENST00000449223 MED1Q15648 1581 aaPredicted RBP25.98■■□□□ 1.75
RPS28-202ENST00000449223 NLRP6P59044 892 aa25.98■■□□□ 1.75
RPS28-202ENST00000449223 XPCQ01831 940 aaPredicted RBP25.98■■□□□ 1.75
RPS28-202ENST00000449223 SPATA31A3Q5VYP0 1347 aa25.97■■□□□ 1.75
RPS28-202ENST00000449223 TNNT2P45379 298 aaPredicted RBP25.97■■□□□ 1.75
RPS28-202ENST00000449223 DDX17Q92841 729 aaKnown RBP25.97■■□□□ 1.75
RPS28-202ENST00000449223 INSRP06213 1382 aa25.96■■□□□ 1.75
RPS28-202ENST00000449223 USP19O94966 1318 aa25.96■■□□□ 1.75
RPS28-202ENST00000449223 CERKQ8TCT0 537 aa25.96■■□□□ 1.75
RPS28-202ENST00000449223 ARHGEF10O15013 1369 aa25.96■■□□□ 1.75
RPS28-202ENST00000449223 PNPLA6Q8IY17 1366 aa25.96■■□□□ 1.75
RPS28-202ENST00000449223 CRYBG1Q9Y4K1 1723 aa25.95■■□□□ 1.75
RPS28-202ENST00000449223 NFAT5O94916 1531 aa25.95■■□□□ 1.75
RPS28-202ENST00000449223 MTHFSP49914 203 aa25.94■■□□□ 1.74
RPS28-202ENST00000449223 CDK12Q9NYV4 1490 aaPredicted RBP25.94■■□□□ 1.74
RPS28-202ENST00000449223 PNISRQ8TF01 805 aaKnown RBP25.93■■□□□ 1.74
RPS28-202ENST00000449223 POLKQ9UBT6 870 aa25.93■■□□□ 1.74
RPS28-202ENST00000449223 PHRF1Q9P1Y6 1649 aaKnown RBP25.93■■□□□ 1.74
RPS28-202ENST00000449223 COL3A1P02461 1466 aaPredicted RBP25.92■■□□□ 1.74
RPS28-202ENST00000449223 SHPRHQ149N8 1683 aa25.91■■□□□ 1.74
RPS28-202ENST00000449223 KIF24Q5T7B8 1368 aa25.91■■□□□ 1.74
RPS28-202ENST00000449223 KCNH5Q8NCM2 988 aa25.89■■□□□ 1.74
RPS28-202ENST00000449223 NUTM2GQ5VZR2 741 aa25.88■■□□□ 1.73
RPS28-202ENST00000449223 PEAK1Q9H792 1746 aa25.88■■□□□ 1.73
RPS28-202ENST00000449223 CFAP53Q96M91 514 aa25.88■■□□□ 1.73
RPS28-202ENST00000449223 COL16A1Q07092 1604 aaPredicted RBP25.87■■□□□ 1.73
RPS28-202ENST00000449223 LTN1O94822 1766 aa25.87■■□□□ 1.73
RPS28-202ENST00000449223 UBAP1LF5GYI3 381 aa25.87■■□□□ 1.73
RPS28-202ENST00000449223 PHLPP1O60346 1717 aa25.86■■□□□ 1.73
RPS28-202ENST00000449223 FBLN1P23142 703 aa25.86■■□□□ 1.73
RPS28-202ENST00000449223 EMILIN1Q9Y6C2 1016 aa25.86■■□□□ 1.73
RPS28-202ENST00000449223 ABCA3Q99758 1704 aa25.85■■□□□ 1.73
RPS28-202ENST00000449223 COL22A1Q8NFW1 1626 aaPredicted RBP25.85■■□□□ 1.73
RPS28-202ENST00000449223 RRS1Q15050 365 aaKnown RBP25.84■■□□□ 1.73
RPS28-202ENST00000449223 MAP3K19Q56UN5 1328 aa25.84■■□□□ 1.73
RPS28-202ENST00000449223 RTL1A6NKG5 1358 aa25.84■■□□□ 1.73
RPS28-202ENST00000449223 GCP02774 474 aa25.83■■□□□ 1.73
RPS28-202ENST00000449223 LMOD2Q6P5Q4 547 aa25.83■■□□□ 1.72
RPS28-202ENST00000449223 FLT4P35916 1363 aa25.82■■□□□ 1.72
RPS28-202ENST00000449223 LRRC59Q96AG4 307 aaKnown RBP25.82■■□□□ 1.72
RPS28-202ENST00000449223 ABCC6O95255 1503 aa25.81■■□□□ 1.72
RPS28-202ENST00000449223 FAM9BQ8IZU0 186 aa25.79■■□□□ 1.72
RPS28-202ENST00000449223 BLMP54132 1417 aaPredicted RBP25.78■■□□□ 1.72
RPS28-202ENST00000449223 CPDO75976 1380 aa25.78■■□□□ 1.72
RPS28-202ENST00000449223 ARHGEF25Q86VW2 580 aa25.78■■□□□ 1.72
RPS28-202ENST00000449223 PIP4K2BP78356 416 aa25.77■■□□□ 1.72
RPS28-202ENST00000449223 SOX12O15370 315 aa25.76■■□□□ 1.71
RPS28-202ENST00000449223 DIAPH1O60610 1272 aaKnown RBP25.76■■□□□ 1.71
RPS28-202ENST00000449223 WDR43Q15061 677 aaKnown RBP eCLIP25.76■■□□□ 1.71
RPS28-202ENST00000449223 PPM1GO15355 546 aaPredicted RBP25.75■■□□□ 1.71
RPS28-202ENST00000449223 RGPD1P0DJD0 1748 aa25.75■■□□□ 1.71
RPS28-202ENST00000449223 COL18A1P39060 1754 aa25.74■■□□□ 1.71
RPS28-202ENST00000449223 HOXC9P31274 260 aa25.73■■□□□ 1.71
RPS28-202ENST00000449223 ADAMTS8Q9UP79 889 aa25.73■■□□□ 1.71
RPS28-202ENST00000449223 NUDCQ9Y266 331 aa25.73■■□□□ 1.71
RPS28-202ENST00000449223 IL13P35225 146 aa25.73■■□□□ 1.71
RPS28-202ENST00000449223 AMPHP49418 695 aa25.73■■□□□ 1.71
RPS28-202ENST00000449223 IP6K1Q92551 441 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms