RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 NISCHQ9Y2I1 1504 aa45.16■■■■■ 4.82
RPS28-202ENST00000449223 CCDC180Q9P1Z9 1646 aa39.77■■■■□ 3.96
RPS28-202ENST00000449223 ZCCHC6Q5VYS8 1495 aaKnown RBP37.86■■■■□ 3.65
RPS28-202ENST00000449223 ABCC9O60706 1549 aa37.79■■■■□ 3.64
RPS28-202ENST00000449223 DCAF1Q9Y4B6 1507 aa37.49■■■■□ 3.59
RPS28-202ENST00000449223 MYO15BQ96JP2 1530 aa37.3■■■■□ 3.56
RPS28-202ENST00000449223 NACADO15069 1562 aa37.11■■■■□ 3.53
RPS28-202ENST00000449223 DCAF8L2P0C7V8 631 aa37.07■■■■□ 3.53
RPS28-202ENST00000449223 RB1CC1Q8TDY2 1594 aa36.89■■■■□ 3.5
RPS28-202ENST00000449223 SCRIBQ14160 1630 aa36.25■■■■□ 3.39
RPS28-202ENST00000449223 UNC13AQ9UPW8 1703 aa36.11■■■■□ 3.37
RPS28-202ENST00000449223 SHROOM4Q9ULL8 1493 aa36.09■■■■□ 3.37
RPS28-202ENST00000449223 BICRAQ9NZM4 1560 aa35.76■■■■□ 3.32
RPS28-202ENST00000449223 PABPN1Q86U42 306 aaKnown RBP eCLIP35.42■■■■□ 3.26
RPS28-202ENST00000449223 CECR2Q9BXF3 1484 aa35.01■■■■□ 3.2
RPS28-202ENST00000449223 BAZ1AQ9NRL2 1556 aaPredicted RBP34.94■■■■□ 3.18
RPS28-202ENST00000449223 SMARCA4P51532 1647 aa34.83■■■■□ 3.17
RPS28-202ENST00000449223 MROH2BQ7Z745 1585 aa34.79■■■■□ 3.16
RPS28-202ENST00000449223 RSF1Q96T23 1441 aaPredicted RBP34.75■■■■□ 3.15
RPS28-202ENST00000449223 EIF4G1Q04637 1599 aaKnown RBP34.71■■■■□ 3.15
RPS28-202ENST00000449223 PEG3Q9GZU2 1588 aa34.55■■■■□ 3.12
RPS28-202ENST00000449223 WIZO95785 1651 aa34.46■■■■□ 3.11
RPS28-202ENST00000449223 SUPT5HO00267 1087 aaKnown RBP34.45■■■■□ 3.11
RPS28-202ENST00000449223 SMARCA2P51531 1590 aa34.4■■■■□ 3.1
RPS28-202ENST00000449223 ATAD2BQ9ULI0 1458 aa34.37■■■■□ 3.09
RPS28-202ENST00000449223 CC2D2AQ9P2K1 1620 aa34.3■■■■□ 3.08
RPS28-202ENST00000449223 NCAPD3P42695 1498 aa34.23■■■■□ 3.07
RPS28-202ENST00000449223 TOP2AP11388 1531 aaKnown RBP34.19■■■■□ 3.06
RPS28-202ENST00000449223 HMGXB3Q12766 1538 aa34.18■■■■□ 3.06
RPS28-202ENST00000449223 BAZ1BQ9UIG0 1483 aaKnown RBP34.11■■■■□ 3.05
RPS28-202ENST00000449223 DNAJC5BQ9UF47 199 aa33.77■■■■□ 3
RPS28-202ENST00000449223 CCDC88BA6NC98 1476 aa33.74■■■□□ 2.99
RPS28-202ENST00000449223 CFTRP13569 1480 aa33.29■■■□□ 2.92
RPS28-202ENST00000449223 CADPSQ9ULU8 1353 aa33.24■■■□□ 2.91
RPS28-202ENST00000449223 PRDM2Q13029 1718 aa33.18■■■□□ 2.9
RPS28-202ENST00000449223 LAMC3Q9Y6N6 1575 aa33.17■■■□□ 2.9
RPS28-202ENST00000449223 NESP48681 1621 aa33.02■■■□□ 2.88
RPS28-202ENST00000449223 PDS5BQ9NTI5 1447 aa32.85■■■□□ 2.85
RPS28-202ENST00000449223 FANCD2Q9BXW9 1451 aa32.85■■■□□ 2.85
RPS28-202ENST00000449223 CHIC1Q5VXU3 224 aa32.82■■■□□ 2.85
RPS28-202ENST00000449223 ABCC8Q09428 1581 aa32.79■■■□□ 2.84
RPS28-202ENST00000449223 KIF21AQ7Z4S6 1674 aa32.72■■■□□ 2.83
RPS28-202ENST00000449223 WRNQ14191 1432 aaPredicted RBP eCLIP32.72■■■□□ 2.835e-8■■□□□ 13
RPS28-202ENST00000449223 CEP164Q9UPV0 1460 aa32.72■■■□□ 2.83
RPS28-202ENST00000449223 SYNJ1O43426 1573 aa32.62■■■□□ 2.81
RPS28-202ENST00000449223 BIVM-ERCC5R4GMW8 1640 aa32.61■■■□□ 2.81
RPS28-202ENST00000449223 TOP2BQ02880 1626 aa32.6■■■□□ 2.81
RPS28-202ENST00000449223 CUX1P39880 1505 aa32.58■■■□□ 2.81
RPS28-202ENST00000449223 TRIM41Q8WV44 630 aa32.54■■■□□ 2.8
RPS28-202ENST00000449223 DNMBPQ6XZF7 1577 aa32.52■■■□□ 2.8
RPS28-202ENST00000449223 ERCC6Q03468 1493 aa32.49■■■□□ 2.79
RPS28-202ENST00000449223 URB2Q14146 1524 aaKnown RBP32.48■■■□□ 2.79
RPS28-202ENST00000449223 MRC2Q9UBG0 1479 aa32.47■■■□□ 2.79
RPS28-202ENST00000449223 TOPBP1Q92547 1522 aa32.45■■■□□ 2.79
RPS28-202ENST00000449223 THOC2Q8NI27 1593 aaKnown RBP32.4■■■□□ 2.78
RPS28-202ENST00000449223 WDR62O43379 1518 aa32.38■■■□□ 2.77
RPS28-202ENST00000449223 FGD5Q6ZNL6 1462 aa32.3■■■□□ 2.76
RPS28-202ENST00000449223 POLA1P09884 1462 aaPredicted RBP32.25■■■□□ 2.75
RPS28-202ENST00000449223 CUX2O14529 1486 aa32.09■■■□□ 2.73
RPS28-202ENST00000449223 SOGA1O94964 1423 aa32.08■■■□□ 2.73
RPS28-202ENST00000449223 WDR97A6NE52 1622 aa32.08■■■□□ 2.73
RPS28-202ENST00000449223 ABCA10Q8WWZ4 1543 aa32.08■■■□□ 2.73
RPS28-202ENST00000449223 TARBP1Q13395 1621 aaKnown RBP32.07■■■□□ 2.72
RPS28-202ENST00000449223 EEA1Q15075 1411 aa32.05■■■□□ 2.72
RPS28-202ENST00000449223 RAD54L2Q9Y4B4 1467 aa32.04■■■□□ 2.72
RPS28-202ENST00000449223 IFT140Q96RY7 1462 aa32■■■□□ 2.71
RPS28-202ENST00000449223 KIF27Q86VH2 1401 aa31.96■■■□□ 2.71
RPS28-202ENST00000449223 RUSC2Q8N2Y8 1516 aa31.94■■■□□ 2.7
RPS28-202ENST00000449223 ABCA5Q8WWZ7 1642 aa31.89■■■□□ 2.7
RPS28-202ENST00000449223 GAPVD1Q14C86 1478 aa31.76■■■□□ 2.68
RPS28-202ENST00000449223 FAM9AQ8IZU1 332 aaPredicted RBP31.76■■■□□ 2.68
RPS28-202ENST00000449223 CSRNP3Q8WYN3 585 aa31.76■■■□□ 2.68
RPS28-202ENST00000449223 TDRD9Q8NDG6 1382 aaKnown RBP31.75■■■□□ 2.67
RPS28-202ENST00000449223 ZNF608Q9ULD9 1512 aaPredicted RBP31.74■■■□□ 2.67
RPS28-202ENST00000449223 ERICH3Q5RHP9 1530 aa31.72■■■□□ 2.67
RPS28-202ENST00000449223 EIF4G3O43432 1585 aaKnown RBP31.72■■■□□ 2.67
RPS28-202ENST00000449223 IGF1RP08069 1367 aa31.7■■■□□ 2.67
RPS28-202ENST00000449223 PBRM1Q86U86 1689 aa31.67■■■□□ 2.66
RPS28-202ENST00000449223 AQRO60306 1485 aaKnown RBP eCLIP31.67■■■□□ 2.661e-6■■■□□ 15.8
RPS28-202ENST00000449223 KIF21BO75037 1637 aa31.66■■■□□ 2.66
RPS28-202ENST00000449223 PRXQ9BXM0 1461 aa31.65■■■□□ 2.66
RPS28-202ENST00000449223 CUL7Q14999 1698 aa31.63■■■□□ 2.65
RPS28-202ENST00000449223 GRIN2BQ13224 1484 aa31.63■■■□□ 2.65
RPS28-202ENST00000449223 CARMIL1Q5VZK9 1371 aa31.52■■■□□ 2.64
RPS28-202ENST00000449223 GOLGA3Q08378 1498 aa31.5■■■□□ 2.63
RPS28-202ENST00000449223 ADAMTS12P58397 1594 aa31.48■■■□□ 2.63
RPS28-202ENST00000449223 MAGI1Q96QZ7 1491 aaPredicted RBP31.47■■■□□ 2.63
RPS28-202ENST00000449223 RAPGEF2Q9Y4G8 1499 aa31.47■■■□□ 2.63
RPS28-202ENST00000449223 FHAD1B1AJZ9 1412 aa31.44■■■□□ 2.62
RPS28-202ENST00000449223 SNAPC4Q5SXM2 1469 aa31.42■■■□□ 2.62
RPS28-202ENST00000449223 LOC105371045A0A1W2PR82 267 aa31.41■■■□□ 2.62
RPS28-202ENST00000449223 SYNJ2O15056 1496 aa31.31■■■□□ 2.6
RPS28-202ENST00000449223 TNIKQ9UKE5 1360 aa31.3■■■□□ 2.6
RPS28-202ENST00000449223 GRIN2AQ12879 1464 aa31.24■■■□□ 2.59
RPS28-202ENST00000449223 EHMT2Q96KQ7 1210 aa31.2■■■□□ 2.59
RPS28-202ENST00000449223 UBTFP17480 764 aaKnown RBP31.19■■■□□ 2.58
RPS28-202ENST00000449223 CTTNBP2Q8WZ74 1663 aa31.17■■■□□ 2.58
RPS28-202ENST00000449223 CHMP7Q8WUX9 453 aaPredicted RBP31.12■■■□□ 2.57
RPS28-202ENST00000449223 CHD1O14646 1710 aa31.11■■■□□ 2.57
RPS28-202ENST00000449223 NUP160Q12769 1436 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms