RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 TMEM51Q9NW97 253 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 R3HCC1Q9Y3T6 440 aaKnown RBP3.51□□□□□ -1.85
LIG4-203ENST00000442234 KIF20AO95235 890 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 PLCG2P16885 1265 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 TMC1Q8TDI8 760 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 ZNF428Q96B54 188 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 AMOTL2Q9Y2J4 779 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 TMEM94Q12767 1356 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 LETM1O95202 739 aaPredicted RBP3.5□□□□□ -1.85
LIG4-203ENST00000442234 LHX8Q68G74 356 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 RGS22Q8NE09 1264 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 KIF21BO75037 1637 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 KIF3CO14782 793 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 DMTNQ08495 405 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 UTP14CQ5TAP6 766 aaKnown RBP3.5□□□□□ -1.85
LIG4-203ENST00000442234 EFCAB3Q8N7B9 438 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 DDX54Q8TDD1 881 aaKnown RBP3.5□□□□□ -1.85
LIG4-203ENST00000442234 PLCD4Q9BRC7 762 aa3.5□□□□□ -1.85
LIG4-203ENST00000442234 CEP290O15078 2479 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 MSH6P52701 1360 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 MINK1Q8N4C8 1332 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 GTPBP6O43824 516 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 HTRA3P83110 453 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 MFSD10Q14728 455 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.49□□□□□ -1.85
LIG4-203ENST00000442234 WAPLQ7Z5K2 1190 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 DNAJC2Q99543 621 aaKnown RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 RGS17Q9UGC6 210 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 ARIH1Q9Y4X5 557 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 A0A0C4DFX4 3053 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 KCNJ4P48050 445 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 IDI1Q13907 227 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 BECN1Q14457 450 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 ZNF622Q969S3 477 aaKnown RBP eCLIP3.49□□□□□ -1.85
LIG4-203ENST00000442234 SLKQ9H2G2 1235 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 ZSWIM6Q9HCJ5 1215 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 FANCAO15360 1455 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 UQCRHLA0A096LP55 91 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 PHF14O94880 888 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 UQCRHP07919 91 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 CBX1P83916 185 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 GOLGA2Q08379 1002 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 OS9Q13438 667 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 AXDND1Q5T1B0 1012 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 SMIM5Q71RC9 77 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 SEPT12Q8IYM1 358 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 GTPBP4Q9BZE4 634 aaKnown RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.49□□□□□ -1.85
LIG4-203ENST00000442234 TRAK1Q9UPV9 953 aa3.49□□□□□ -1.85
LIG4-203ENST00000442234 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.49□□□□□ -1.85
LIG4-203ENST00000442234 NKX1-1Q15270 411 aaPredicted RBP3.48□□□□□ -1.85
LIG4-203ENST00000442234 CABP2Q9NPB3 220 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 STK24Q9Y6E0 443 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 PLCH2O75038 1416 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 ARHGAP5Q13017 1502 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 SLC34A2O95436 690 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 MRE11P49959 708 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 HDGFP51858 240 aaKnown RBP3.48□□□□□ -1.85
LIG4-203ENST00000442234 BOLA1Q9Y3E2 137 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 WDR7Q9Y4E6 1490 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 CCDC66A2RUB6 948 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 RBM6P78332 1123 aaKnown RBP3.48□□□□□ -1.85
LIG4-203ENST00000442234 EZH2Q15910 746 aaKnown RBP3.48□□□□□ -1.85
LIG4-203ENST00000442234 NBPF8Q3BBV2 869 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 NBPF14Q5TI25 921 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 PANK2Q9BZ23 570 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 ABCC2Q92887 1545 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 KIAA0586Q9BVV6 1533 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 CEP162Q5TB80 1403 aa3.48□□□□□ -1.85
LIG4-203ENST00000442234 STK25O00506 426 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 POTEJP0CG39 1038 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 XRCC6P12956 609 aaKnown RBP eCLIP3.47□□□□□ -1.85
LIG4-203ENST00000442234 CADPS2Q86UW7 1296 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 ZNF592Q92610 1267 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 BTG4Q9NY30 223 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 KCNG1Q9UIX4 513 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 TNRQ92752 1358 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 SRPK2P78362 688 aaKnown RBP3.47□□□□□ -1.85
LIG4-203ENST00000442234 TMED8Q6PL24 325 aaPredicted RBP3.47□□□□□ -1.85
LIG4-203ENST00000442234 LRRC59Q96AG4 307 aaKnown RBP3.47□□□□□ -1.85
LIG4-203ENST00000442234 BACH2Q9BYV9 841 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 COLQQ9Y215 455 aaPredicted RBP3.47□□□□□ -1.85
LIG4-203ENST00000442234 EPRSP07814 1512 aaKnown RBP3.47□□□□□ -1.85
LIG4-203ENST00000442234 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.47□□□□□ -1.85
LIG4-203ENST00000442234 CUL9Q8IWT3 2517 aa3.47□□□□□ -1.85
LIG4-203ENST00000442234 TRIM6-TRIM34B2RNG4 842 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 MYCP01106 439 aaPredicted RBP3.46□□□□□ -1.85
LIG4-203ENST00000442234 RALBP1Q15311 655 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 TOM1L2Q6ZVM7 507 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 CCDC94Q9BW85 323 aaPredicted RBP3.46□□□□□ -1.85
LIG4-203ENST00000442234 TRIM34Q9BYJ4 488 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 UPF2Q9HAU5 1272 aaKnown RBP3.46□□□□□ -1.85
LIG4-203ENST00000442234 MRS2Q9HD23 443 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 SCUBE2Q9NQ36 999 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 NLRP2Q9NX02 1062 aa3.46□□□□□ -1.85
LIG4-203ENST00000442234 TRPC5Q9UL62 973 aaPredicted RBP3.46□□□□□ -1.85
LIG4-203ENST00000442234 PTPRZ1P23471 2315 aaPredicted RBP3.46□□□□□ -1.85
LIG4-203ENST00000442234 GOLGA3Q08378 1498 aa3.46□□□□□ -1.86
LIG4-203ENST00000442234 RAPGEF2Q9Y4G8 1499 aa3.46□□□□□ -1.86
LIG4-203ENST00000442234 FAM177BA6PVY3 158 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms