RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 KIF3BO15066 747 aa6.55□□□□□ -1.36
SF3B1-202ENST00000409915 DSG2Q14126 1118 aa6.55□□□□□ -1.36
SF3B1-202ENST00000409915 NCOA1Q15788 1441 aa6.55□□□□□ -1.36
SF3B1-202ENST00000409915 ANKRD30AQ9BXX3 1397 aa6.55□□□□□ -1.36
SF3B1-202ENST00000409915 DUOX2Q9NRD8 1548 aa6.55□□□□□ -1.36
SF3B1-202ENST00000409915 ADGRL2O95490 1459 aa6.54□□□□□ -1.36
SF3B1-202ENST00000409915 SPNS2Q8IVW8 549 aa6.54□□□□□ -1.36
SF3B1-202ENST00000409915 TMC2Q8TDI7 906 aa6.54□□□□□ -1.36
SF3B1-202ENST00000409915 CLTCQ00610 1675 aaKnown RBP6.54□□□□□ -1.36
SF3B1-202ENST00000409915 MROH1Q8NDA8 1641 aa6.54□□□□□ -1.36
SF3B1-202ENST00000409915 ERBINQ96RT1 1412 aa6.53□□□□□ -1.36
SF3B1-202ENST00000409915 MCM6Q14566 821 aa6.53□□□□□ -1.36
SF3B1-202ENST00000409915 KRTAP3-3Q9BYR6 98 aa6.53□□□□□ -1.36
SF3B1-202ENST00000409915 KRTAP3-2Q9BYR7 98 aa6.53□□□□□ -1.36
SF3B1-202ENST00000409915 ESF1Q9H501 851 aaKnown RBP6.53□□□□□ -1.36
SF3B1-202ENST00000409915 RNF17Q9BXT8 1623 aaKnown RBP6.53□□□□□ -1.36
SF3B1-202ENST00000409915 EIF2AK4Q9P2K8 1649 aaKnown RBP6.53□□□□□ -1.36
SF3B1-202ENST00000409915 C3P01024 1663 aa6.52□□□□□ -1.37
SF3B1-202ENST00000409915 KDM5DQ9BY66 1539 aa6.52□□□□□ -1.37
SF3B1-202ENST00000409915 ZEB1P37275 1124 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-202ENST00000409915 MMRN1Q13201 1228 aa6.52□□□□□ -1.37
SF3B1-202ENST00000409915 VARS2Q5ST30 1063 aaKnown RBP6.52□□□□□ -1.37
SF3B1-202ENST00000409915 CRISPLD2Q9H0B8 497 aa6.52□□□□□ -1.37
SF3B1-202ENST00000409915 GPHNQ9NQX3 736 aaPredicted RBP6.52□□□□□ -1.37
SF3B1-202ENST00000409915 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.52□□□□□ -1.37
SF3B1-202ENST00000409915 CNTLNQ9NXG0 1405 aa6.51□□□□□ -1.37
SF3B1-202ENST00000409915 ANKRD50Q9ULJ7 1429 aa6.51□□□□□ -1.37
SF3B1-202ENST00000409915 ABCC3O15438 1527 aa6.51□□□□□ -1.37
SF3B1-202ENST00000409915 PRDM15P57071 1507 aaPredicted RBP6.51□□□□□ -1.37
SF3B1-202ENST00000409915 CEP152O94986 1710 aa6.51□□□□□ -1.37
SF3B1-202ENST00000409915 NUDT7P0C024 238 aa6.51□□□□□ -1.37
SF3B1-202ENST00000409915 PLPP6Q8IY26 295 aa6.51□□□□□ -1.37
SF3B1-202ENST00000409915 WASHC2CQ9Y4E1 1318 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 MROH2AA6NES4 1674 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 LMTK3Q96Q04 1460 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 ROCK1Q13464 1354 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 ZMYM3Q14202 1370 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 FOXK1P85037 733 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 GOPCQ9HD26 462 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 PCDHGA4Q9Y5G9 962 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 DEPDC5O75140 1603 aa6.5□□□□□ -1.37
SF3B1-202ENST00000409915 PATL2C9JE40 543 aaKnown RBP6.49□□□□□ -1.37
SF3B1-202ENST00000409915 MLLT3P42568 568 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-202ENST00000409915 HSPA2P54652 639 aa6.49□□□□□ -1.37
SF3B1-202ENST00000409915 FBXO31Q5XUX0 539 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-202ENST00000409915 FAM177A1Q8N128 213 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-202ENST00000409915 FNBP4Q8N3X1 1017 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-202ENST00000409915 ZSWIM6Q9HCJ5 1215 aa6.49□□□□□ -1.37
SF3B1-202ENST00000409915 CAMSAP1Q5T5Y3 1602 aa6.49□□□□□ -1.37
SF3B1-202ENST00000409915 PZPP20742 1482 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 POM121Q96HA1 1249 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 PCMTD1Q96MG8 357 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-202ENST00000409915 ANP32EQ9BTT0 268 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 AMOTL2Q9Y2J4 779 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 FAM135AQ9P2D6 1515 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 NAIPQ13075 1403 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 ZC3H13Q5T200 1668 aaKnown RBP6.48□□□□□ -1.37
SF3B1-202ENST00000409915 GCC2Q8IWJ2 1684 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 UNC13BO14795 1591 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 VWDEQ8N2E2 1590 aa6.48□□□□□ -1.37
SF3B1-202ENST00000409915 MYO3AQ8NEV4 1616 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 PREX1Q8TCU6 1659 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 UPF1Q92900 1129 aaKnown RBP eCLIP6.47□□□□□ -1.37
SF3B1-202ENST00000409915 LHX6Q9UPM6 363 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 ARIH1Q9Y4X5 557 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-202ENST00000409915 HFM1A2PYH4 1435 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 NPATQ14207 1427 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 UHRF1BP1Q6BDS2 1440 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 ERVK-7P63135 1459 aa6.47□□□□□ -1.37
SF3B1-202ENST00000409915 KANK1Q14678 1352 aa6.46□□□□□ -1.37
SF3B1-202ENST00000409915 TNRQ92752 1358 aa6.46□□□□□ -1.37
SF3B1-202ENST00000409915 EFCAB6Q5THR3 1501 aa6.46□□□□□ -1.37
SF3B1-202ENST00000409915 SLC34A2O95436 690 aa6.46□□□□□ -1.38
SF3B1-202ENST00000409915 PPP1R15BQ5SWA1 713 aa6.46□□□□□ -1.38
SF3B1-202ENST00000409915 POTEEQ6S8J3 1075 aa6.46□□□□□ -1.38
SF3B1-202ENST00000409915 PARP9Q8IXQ6 854 aa6.46□□□□□ -1.38
SF3B1-202ENST00000409915 LMTK2Q8IWU2 1503 aa6.45□□□□□ -1.38
SF3B1-202ENST00000409915 NUP155O75694 1391 aa6.45□□□□□ -1.38
SF3B1-202ENST00000409915 SPATA31D1Q6ZQQ2 1576 aa6.45□□□□□ -1.38
SF3B1-202ENST00000409915 CEP170BQ9Y4F5 1589 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-202ENST00000409915 PDE4CQ08493 712 aa6.45□□□□□ -1.38
SF3B1-202ENST00000409915 LARP6Q9BRS8 491 aaKnown RBP6.45□□□□□ -1.38
SF3B1-202ENST00000409915 POLR3GLQ9BT43 218 aa6.45□□□□□ -1.38
SF3B1-202ENST00000409915 IQGAP3Q86VI3 1631 aa6.44□□□□□ -1.38
SF3B1-202ENST00000409915 PPP1R15AO75807 674 aaPredicted RBP6.44□□□□□ -1.38
SF3B1-202ENST00000409915 KCNA1Q09470 495 aa6.44□□□□□ -1.38
SF3B1-202ENST00000409915 ANKRD13DQ6ZTN6 518 aa6.44□□□□□ -1.38
SF3B1-202ENST00000409915 PTCD2Q8WV60 388 aaKnown RBP6.44□□□□□ -1.38
SF3B1-202ENST00000409915 TET3O43151 1660 aa6.44□□□□□ -1.38
SF3B1-202ENST00000409915 SYNMO15061 1565 aa6.44□□□□□ -1.38
SF3B1-202ENST00000409915 ARHGAP31Q2M1Z3 1444 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 ZNF142P52746 1687 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-202ENST00000409915 A2ML1A8K2U0 1454 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 AMHR2Q16671 573 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 CCDC27Q2M243 656 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 DHX37Q8IY37 1157 aaKnown RBP6.43□□□□□ -1.38
SF3B1-202ENST00000409915 CCDC102AQ96A19 550 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 TRIM52Q96A61 297 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 EMILIN3Q9NT22 766 aa6.43□□□□□ -1.38
SF3B1-202ENST00000409915 AXIN2Q9Y2T1 843 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms